Literature DB >> 24454160

Hexa-μ-acetato-1:2κ(4) O,O';1:2κ(2) O:O;2:3κ(4) O,O';2:3κ(2) O:O-bis-(4,4'-dimethyl-2,2'-bi-pyridine)-1κ(2) N,N';3κ(2) N,N'-2-calcium-1,3-dizinc.

Avijit Pramanik1, Frank R Fronczek2, Ramaiyer Venkatraman1, Md Alamgir Hossain1.   

Abstract

In the centrosymmetric trinuclear Zn(II)Ca(II)Zn(II) title complex, [CaZn2(CH3COO)6(C12H12N2)2], the Ca(II) ion lies on an inversion centre and is octa-hedrally coordinated by six acetate O atoms. The Zn(II) ion is coordinated by two N atoms from a bidentate di-methyl-bipyridine ligand and three O atoms from acetate ligands bridging to the Ca(II) ion, leading to a distorted square-pyramidal coordination sphere. The ZnCa distance is 3.4668 (5) Å.

Entities:  

Year:  2013        PMID: 24454160      PMCID: PMC3884985          DOI: 10.1107/S1600536813030122

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a review of the coordination chemistry of metal carboxyl­ates, see: Rao et al. (2004 ▶). For applications of metal complexes in anion binding, see: Saeed et al. (2010 ▶); Mendy et al. (2010 ▶). For multimetallic complexes involving azide, cyanide, isocyanate, isothiocyanate, hydroxide, oxide and carboxylate anions, see: Herold & Lippard (1997 ▶). For coordin­ation modes of carboxyl­ate ions acting as bidentate ligands in metalloenzymes, see: Voegtli et al. (2000 ▶). For details of the synthesis, see: Hossain et al. (2010 ▶).

Experimental

Crystal data

[CaZn2(C2H3O2)6(C12H12N2)2] M = 893.56 Triclinic, a = 8.3356 (10) Å b = 8.841 (1) Å c = 13.696 (2) Å α = 74.103 (7)° β = 83.263 (6)° γ = 83.560 (7)° V = 960.6 (2) Å3 Z = 1 Mo Kα radiation μ = 1.45 mm−1 T = 100 K 0.34 × 0.32 × 0.27 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.639, T max = 0.699 16096 measured reflections 8962 independent reflections 7497 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.086 S = 1.05 8962 reflections 256 parameters H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.78 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813030122/fj2647sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030122/fj2647Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CaZn2(C2H3O2)6(C12H12N2)2]Z = 1
Mr = 893.56F(000) = 462
Triclinic, P1Dx = 1.545 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.3356 (10) ÅCell parameters from 7990 reflections
b = 8.841 (1) Åθ = 2.5–36.7°
c = 13.696 (2) ŵ = 1.45 mm1
α = 74.103 (7)°T = 100 K
β = 83.263 (6)°Parallelepiped, colorless
γ = 83.560 (7)°0.34 × 0.32 × 0.27 mm
V = 960.6 (2) Å3
Nonius KappaCCD diffractometer8962 independent reflections
Radiation source: fine-focus sealed tube7497 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
ω and φ scansθmax = 36.7°, θmin = 3.0°
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997)h = −13→13
Tmin = 0.639, Tmax = 0.699k = −14→14
16096 measured reflectionsl = −22→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.0386P)2 + 0.3887P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
8962 reflectionsΔρmax = 0.65 e Å3
256 parametersΔρmin = −0.78 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0061 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.645512 (17)0.565205 (16)0.245482 (10)0.01344 (4)
Ca10.50000.50000.50000.01472 (6)
O10.42917 (11)0.57148 (11)0.33397 (7)0.01780 (16)
O20.36225 (13)0.71366 (13)0.18192 (8)0.02391 (19)
O30.83825 (11)0.42210 (11)0.30301 (7)0.01864 (16)
O40.69345 (13)0.32456 (12)0.45013 (8)0.02265 (18)
O50.71692 (12)0.76819 (11)0.26269 (7)0.01935 (17)
O60.68069 (13)0.68704 (12)0.43296 (7)0.02151 (18)
N10.73039 (13)0.60239 (13)0.09209 (8)0.01657 (18)
N20.56062 (13)0.37004 (12)0.20333 (8)0.01583 (17)
C10.81557 (16)0.72407 (16)0.04117 (10)0.0197 (2)
H10.82700.80350.07400.024*
C20.88835 (16)0.73989 (19)−0.05764 (10)0.0240 (3)
C30.87138 (17)0.62079 (19)−0.10347 (10)0.0252 (3)
H30.92150.6255−0.17010.030*
C40.78117 (17)0.49493 (18)−0.05182 (10)0.0222 (2)
H40.76760.4143−0.08320.027*
C50.71088 (15)0.48875 (15)0.04678 (9)0.0172 (2)
C60.61311 (15)0.35900 (15)0.10892 (9)0.0169 (2)
C70.57756 (16)0.23203 (17)0.07454 (11)0.0218 (2)
H70.61310.22610.00710.026*
C80.48959 (17)0.11521 (16)0.14069 (12)0.0232 (3)
H80.46670.02730.11890.028*
C90.43442 (15)0.12613 (15)0.23931 (11)0.0196 (2)
C100.47342 (15)0.25801 (14)0.26603 (10)0.0176 (2)
H100.43620.26900.33220.021*
C110.9812 (2)0.8811 (2)−0.11066 (13)0.0346 (4)
H11A1.03520.8670−0.17550.052*
H11B1.06250.8915−0.06730.052*
H11C0.90610.9765−0.12370.052*
C120.34091 (18)0.00266 (16)0.31539 (13)0.0256 (3)
H12A0.31320.03480.37870.038*
H12B0.4074−0.09830.32950.038*
H12C0.2413−0.00900.28760.038*
C130.32312 (15)0.64702 (15)0.27164 (10)0.0181 (2)
C140.14820 (17)0.6467 (2)0.31439 (13)0.0278 (3)
H14A0.08480.73590.27250.042*
H14B0.14000.65620.38450.042*
H14C0.10600.54780.31410.042*
C150.82225 (15)0.33229 (14)0.39256 (10)0.0172 (2)
C160.97115 (18)0.22946 (17)0.43100 (12)0.0258 (3)
H16A1.03920.29060.45690.039*
H16B1.03260.19280.37510.039*
H16C0.93820.13830.48600.039*
C170.71988 (15)0.78611 (14)0.35138 (10)0.0168 (2)
C180.77759 (17)0.93922 (15)0.35734 (11)0.0211 (2)
H18A0.72560.96630.41900.032*
H18B0.74911.02350.29720.032*
H18C0.89550.92710.35970.032*
U11U22U33U12U13U23
Zn10.01502 (6)0.01454 (7)0.01144 (6)−0.00042 (4)−0.00181 (4)−0.00464 (4)
Ca10.01700 (14)0.01496 (13)0.01184 (13)−0.00157 (10)−0.00028 (10)−0.00328 (10)
O10.0157 (4)0.0207 (4)0.0197 (4)0.0005 (3)−0.0035 (3)−0.0098 (3)
O20.0267 (5)0.0276 (5)0.0201 (4)−0.0007 (4)−0.0052 (4)−0.0103 (4)
O30.0182 (4)0.0205 (4)0.0170 (4)0.0008 (3)−0.0045 (3)−0.0043 (3)
O40.0236 (4)0.0183 (4)0.0232 (5)−0.0002 (3)0.0002 (4)−0.0024 (3)
O50.0234 (4)0.0193 (4)0.0172 (4)−0.0026 (3)−0.0031 (3)−0.0072 (3)
O60.0267 (5)0.0201 (4)0.0180 (4)−0.0057 (3)−0.0054 (3)−0.0026 (3)
N10.0152 (4)0.0210 (5)0.0138 (4)0.0009 (3)−0.0031 (3)−0.0053 (3)
N20.0169 (4)0.0158 (4)0.0168 (4)0.0015 (3)−0.0045 (3)−0.0076 (3)
C10.0180 (5)0.0246 (6)0.0152 (5)−0.0017 (4)−0.0014 (4)−0.0032 (4)
C20.0177 (5)0.0345 (7)0.0161 (5)0.0009 (5)−0.0013 (4)−0.0017 (5)
C30.0210 (6)0.0391 (8)0.0132 (5)0.0048 (5)−0.0015 (4)−0.0058 (5)
C40.0209 (5)0.0320 (7)0.0149 (5)0.0056 (5)−0.0042 (4)−0.0104 (5)
C50.0159 (5)0.0235 (5)0.0137 (5)0.0044 (4)−0.0050 (4)−0.0080 (4)
C60.0154 (5)0.0209 (5)0.0166 (5)0.0041 (4)−0.0061 (4)−0.0091 (4)
C70.0212 (6)0.0259 (6)0.0234 (6)0.0042 (5)−0.0075 (5)−0.0152 (5)
C80.0211 (6)0.0225 (6)0.0322 (7)0.0032 (4)−0.0095 (5)−0.0166 (5)
C90.0166 (5)0.0166 (5)0.0281 (6)0.0024 (4)−0.0072 (4)−0.0097 (4)
C100.0171 (5)0.0166 (5)0.0211 (5)0.0007 (4)−0.0039 (4)−0.0081 (4)
C110.0299 (7)0.0446 (9)0.0227 (7)−0.0096 (7)0.0040 (6)0.0022 (6)
C120.0218 (6)0.0177 (5)0.0392 (8)−0.0020 (4)−0.0039 (5)−0.0102 (5)
C130.0159 (5)0.0188 (5)0.0241 (6)−0.0008 (4)−0.0039 (4)−0.0129 (4)
C140.0143 (5)0.0355 (7)0.0371 (8)−0.0019 (5)−0.0008 (5)−0.0160 (6)
C150.0204 (5)0.0133 (5)0.0189 (5)0.0013 (4)−0.0063 (4)−0.0053 (4)
C160.0263 (6)0.0225 (6)0.0279 (7)0.0090 (5)−0.0108 (5)−0.0066 (5)
C170.0168 (5)0.0155 (5)0.0195 (5)0.0000 (4)−0.0049 (4)−0.0063 (4)
C180.0259 (6)0.0165 (5)0.0234 (6)−0.0039 (4)−0.0062 (5)−0.0067 (4)
Zn1—O32.0243 (10)C4—C51.3968 (18)
Zn1—O52.0334 (10)C4—H40.9500
Zn1—O12.0556 (10)C5—C61.4887 (19)
Zn1—N12.0851 (11)C6—C71.4023 (18)
Zn1—N22.1741 (10)C7—C81.388 (2)
Zn1—Ca13.4668 (5)C7—H70.9500
Ca1—O4i2.2876 (10)C8—C91.400 (2)
Ca1—O42.2876 (10)C8—H80.9500
Ca1—O6i2.2910 (10)C9—C101.3949 (17)
Ca1—O62.2910 (10)C9—C121.504 (2)
Ca1—O12.3158 (10)C10—H100.9500
Ca1—O1i2.3158 (10)C11—H11A0.9800
Ca1—Zn1i3.4668 (5)C11—H11B0.9800
O1—C131.2994 (16)C11—H11C0.9800
O2—C131.2313 (17)C12—H12A0.9800
O3—C151.2666 (15)C12—H12B0.9800
O4—C151.2520 (17)C12—H12C0.9800
O5—C171.2706 (15)C13—C141.5061 (19)
O6—C171.2509 (16)C14—H14A0.9800
N1—C11.3386 (17)C14—H14B0.9800
N1—C51.3502 (16)C14—H14C0.9800
N2—C101.3401 (17)C15—C161.5106 (18)
N2—C61.3415 (16)C16—H16A0.9800
C1—C21.3935 (19)C16—H16B0.9800
C1—H10.9500C16—H16C0.9800
C2—C31.393 (2)C17—C181.5121 (17)
C2—C111.507 (2)C18—H18A0.9800
C3—C41.391 (2)C18—H18B0.9800
C3—H30.9500C18—H18C0.9800
O3—Zn1—O596.76 (4)N2—C6—C5114.92 (10)
O3—Zn1—O1120.20 (4)C7—C6—C5124.11 (11)
O5—Zn1—O195.68 (4)C8—C7—C6118.89 (12)
O3—Zn1—N196.90 (4)C8—C7—H7120.6
O5—Zn1—N196.21 (4)C6—C7—H7120.6
O1—Zn1—N1139.18 (4)C7—C8—C9120.39 (12)
O3—Zn1—N289.55 (4)C7—C8—H8119.8
O5—Zn1—N2171.01 (4)C9—C8—H8119.8
O1—Zn1—N286.60 (4)C10—C9—C8116.57 (13)
N1—Zn1—N276.62 (4)C10—C9—C12120.25 (13)
O4i—Ca1—O4180.0C8—C9—C12123.17 (12)
O4i—Ca1—O6i86.56 (4)N2—C10—C9123.49 (12)
O4—Ca1—O6i93.44 (4)N2—C10—H10118.3
O4i—Ca1—O693.44 (4)C9—C10—H10118.3
O4—Ca1—O686.56 (4)C2—C11—H11A109.5
O6i—Ca1—O6180.0C2—C11—H11B109.5
O4i—Ca1—O193.28 (4)H11A—C11—H11B109.5
O4—Ca1—O186.72 (4)C2—C11—H11C109.5
O6i—Ca1—O197.73 (3)H11A—C11—H11C109.5
O6—Ca1—O182.27 (3)H11B—C11—H11C109.5
O4i—Ca1—O1i86.72 (4)C9—C12—H12A109.5
O4—Ca1—O1i93.28 (4)C9—C12—H12B109.5
O6i—Ca1—O1i82.27 (3)H12A—C12—H12B109.5
O6—Ca1—O1i97.73 (3)C9—C12—H12C109.5
O1—Ca1—O1i179.999 (17)H12A—C12—H12C109.5
C13—O1—Zn1105.63 (8)H12B—C12—H12C109.5
C13—O1—Ca1146.51 (8)O2—C13—O1122.19 (12)
Zn1—O1—Ca1104.79 (4)O2—C13—C14121.36 (13)
C15—O3—Zn1119.31 (8)O1—C13—C14116.44 (12)
C15—O4—Ca1136.47 (8)C13—C14—H14A109.5
C17—O5—Zn1120.05 (8)C13—C14—H14B109.5
C17—O6—Ca1140.65 (8)H14A—C14—H14B109.5
C1—N1—C5119.60 (11)C13—C14—H14C109.5
C1—N1—Zn1122.94 (9)H14A—C14—H14C109.5
C5—N1—Zn1117.12 (9)H14B—C14—H14C109.5
C10—N2—C6119.69 (11)O4—C15—O3124.57 (12)
C10—N2—Zn1125.10 (8)O4—C15—C16118.87 (12)
C6—N2—Zn1115.00 (9)O3—C15—C16116.56 (12)
N1—C1—C2123.20 (13)C15—C16—H16A109.5
N1—C1—H1118.4C15—C16—H16B109.5
C2—C1—H1118.4H16A—C16—H16B109.5
C3—C2—C1117.19 (13)C15—C16—H16C109.5
C3—C2—C11122.54 (13)H16A—C16—H16C109.5
C1—C2—C11120.27 (14)H16B—C16—H16C109.5
C4—C3—C2120.09 (12)O6—C17—O5125.19 (11)
C4—C3—H3120.0O6—C17—C18118.20 (11)
C2—C3—H3120.0O5—C17—C18116.61 (11)
C3—C4—C5119.08 (13)C17—C18—H18A109.5
C3—C4—H4120.5C17—C18—H18B109.5
C5—C4—H4120.5H18A—C18—H18B109.5
N1—C5—C4120.82 (13)C17—C18—H18C109.5
N1—C5—C6115.76 (10)H18A—C18—H18C109.5
C4—C5—C6123.42 (12)H18B—C18—H18C109.5
N2—C6—C7120.96 (12)
O3—Zn1—O1—C13−167.59 (7)O1—Zn1—N2—C6148.38 (9)
O5—Zn1—O1—C1391.19 (8)N1—Zn1—N2—C65.87 (8)
N1—Zn1—O1—C13−15.15 (11)C5—N1—C1—C2−0.71 (19)
N2—Zn1—O1—C13−80.09 (8)Zn1—N1—C1—C2172.43 (10)
Ca1—Zn1—O1—C13165.81 (10)N1—C1—C2—C3−0.8 (2)
O3—Zn1—O1—Ca126.60 (5)N1—C1—C2—C11179.41 (13)
O5—Zn1—O1—Ca1−74.63 (4)C1—C2—C3—C41.7 (2)
N1—Zn1—O1—Ca1179.04 (5)C11—C2—C3—C4−178.52 (14)
N2—Zn1—O1—Ca1114.10 (4)C2—C3—C4—C5−1.1 (2)
O4i—Ca1—O1—C13−12.60 (15)C1—N1—C5—C41.28 (18)
O4—Ca1—O1—C13167.40 (15)Zn1—N1—C5—C4−172.25 (9)
O6i—Ca1—O1—C1374.37 (15)C1—N1—C5—C6−179.45 (11)
O6—Ca1—O1—C13−105.63 (15)Zn1—N1—C5—C67.02 (13)
O4i—Ca1—O1—Zn1142.08 (4)C3—C4—C5—N1−0.37 (19)
O4—Ca1—O1—Zn1−37.92 (4)C3—C4—C5—C6−179.58 (11)
O6i—Ca1—O1—Zn1−130.95 (4)C10—N2—C6—C70.24 (17)
O6—Ca1—O1—Zn149.05 (4)Zn1—N2—C6—C7175.22 (9)
O5—Zn1—O3—C15103.30 (9)C10—N2—C6—C5−179.08 (10)
O1—Zn1—O3—C152.69 (10)Zn1—N2—C6—C5−4.10 (13)
N1—Zn1—O3—C15−159.58 (9)N1—C5—C6—N2−1.71 (15)
N2—Zn1—O3—C15−83.12 (9)C4—C5—C6—N2177.54 (11)
O6i—Ca1—O4—C15165.69 (13)N1—C5—C6—C7178.99 (11)
O6—Ca1—O4—C15−14.31 (13)C4—C5—C6—C7−1.76 (19)
O1—Ca1—O4—C1568.13 (13)N2—C6—C7—C8−1.36 (18)
O1i—Ca1—O4—C15−111.87 (13)C5—C6—C7—C8177.90 (12)
O3—Zn1—O5—C17−68.30 (10)C6—C7—C8—C91.38 (19)
O1—Zn1—O5—C1753.08 (10)C7—C8—C9—C10−0.33 (19)
N1—Zn1—O5—C17−166.04 (10)C7—C8—C9—C12−178.98 (12)
O4i—Ca1—O6—C17−89.17 (14)C6—N2—C10—C90.90 (18)
O4—Ca1—O6—C1790.83 (14)Zn1—N2—C10—C9−173.54 (9)
O1—Ca1—O6—C173.67 (14)C8—C9—C10—N2−0.85 (18)
O1i—Ca1—O6—C17−176.33 (14)C12—C9—C10—N2177.85 (12)
O3—Zn1—N1—C1−92.32 (10)Zn1—O1—C13—O2−8.12 (14)
O5—Zn1—N1—C15.29 (10)Ca1—O1—C13—O2146.45 (12)
O1—Zn1—N1—C1111.43 (10)Zn1—O1—C13—C14170.85 (9)
N2—Zn1—N1—C1179.79 (11)Ca1—O1—C13—C14−34.6 (2)
O3—Zn1—N1—C580.97 (9)Ca1—O4—C15—O3−47.00 (19)
O5—Zn1—N1—C5178.58 (9)Ca1—O4—C15—C16132.51 (12)
O1—Zn1—N1—C5−75.27 (11)Zn1—O3—C15—O4−0.07 (17)
N2—Zn1—N1—C5−6.91 (8)Zn1—O3—C15—C16−179.59 (9)
O3—Zn1—N2—C1083.33 (10)Ca1—O6—C17—O5−35.1 (2)
O1—Zn1—N2—C10−36.95 (10)Ca1—O6—C17—C18145.71 (11)
N1—Zn1—N2—C10−179.46 (10)Zn1—O5—C17—O6−0.38 (18)
O3—Zn1—N2—C6−91.33 (9)Zn1—O5—C17—C18178.85 (8)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Fluorescent detection of phosphate anion by a highly selective chemosensor in water.

Authors:  Musabbir A Saeed; Douglas R Powell; Md Alamgir Hossain
Journal:  Tetrahedron Lett       Date:  2010-09-15       Impact factor: 2.415

3.  Unusual complexes of trapped methanol with azacryptands.

Authors:  Md Alamgir Hossain; Musabbir A Saeed; Ganna Gryn'ova; Douglas R Powell; Jerzy Leszczynski
Journal:  CrystEngComm       Date:  2010-01-01       Impact factor: 3.545

4.  Anion recognition and sensing by a new macrocyclic dinuclear copper(II) complex: a selective receptor for iodide.

Authors:  John S Mendy; Musabbir A Saeed; Frank R Fronczek; Douglas R Powell; Md Alamgir Hossain
Journal:  Inorg Chem       Date:  2010-08-16       Impact factor: 5.165

5.  Metal carboxylates with open architectures.

Authors:  C N R Rao; Srinivasan Natarajan; R Vaidhyanathan
Journal:  Angew Chem Int Ed Engl       Date:  2004-03-12       Impact factor: 15.336

  5 in total

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