Literature DB >> 24454154

(2-{[4-(Chlorido-mercur-yl)phen-yl]imino-meth-yl}pyridine-κ(2) N,N')di-iodido-mercury(II) dimethyl sulfoxide monosolvate.

Tushar S Basu Baul1, Imliwati Longkumer1, Seik Weng Ng2, Edward R T Tiekink3.   

Abstract

The title dimethyl sulfoxide solvate, [Hg2(C12H9ClN2)I2]·C2H6OS, features tetra-hedrally and linearly coordinated Hg(II) atoms. The distorted tetrahedral coordination sphere is defined by chelating N atoms that define an acute angle [69.6 (3)°] and two I atoms that form a wide angle [142.80 (4)°]. The linearly coordinated Hg(II) atom [177.0 (4)°] exists with a donor set defined by C and Cl atoms. Secondary inter-actions are apparent in the crystal packing with the tetra-hedrally and linearly coordinated Hg(II) atoms expanding their coordination environments by forming weak Hg⋯I [3.772 (7) Å] and Hg⋯O [2.921 (12) Å] inter-actions, respectively. Mercury-containing mol-ecules stack along the a axis, are connected by π-π inter-actions [inter-centroid distance between pyridine and benzene rings = 3.772 (7) Å] and define channels in which the dimethyl sulfoxide mol-ecules reside. The latter are connected by the aforementioned Hg⋯O inter-actions as well as C-H⋯I and C-H⋯O inter-actions, resulting in a three-dimensional architecture.

Entities:  

Year:  2013        PMID: 24454154      PMCID: PMC3884979          DOI: 10.1107/S1600536813029693

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the structural, spectroscopic and biological properties of zinc triad elements with (E)-N-(pyridin-2-yl­methyl­idene)aryl­amine-type ligands, see: Basu Baul, Kundu, Höpfl et al. (2013 ▶); Basu Baul, Kundu, Linden et al. (2013 ▶); Basu Baul, Kundu, Mitra et al. (2013 ▶).

Experimental

Crystal data

[Hg2(C12H9ClN2)I2]·C2H6OS M = 949.77 Triclinic, a = 8.5795 (6) Å b = 9.8373 (7) Å c = 13.6999 (8) Å α = 70.030 (6)° β = 76.779 (5)° γ = 79.362 (6)° V = 1050.74 (12) Å3 Z = 2 Mo Kα radiation μ = 17.76 mm−1 T = 295 K 0.20 × 0.10 × 0.04 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▶) T min = 0.358, T max = 1.000 12862 measured reflections 4848 independent reflections 3470 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.143 S = 1.03 4848 reflections 208 parameters H-atom parameters constrained Δρmax = 4.40 e Å−3 Δρmin = −1.45 e Å−3 Data collection: CrysAlis PRO (Agilent, 2013 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) general, I. DOI: 10.1107/S1600536813029693/hg5358sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813029693/hg5358Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Hg2(C12H9ClN2)I2]·C2H6OSZ = 2
Mr = 949.77F(000) = 840
Triclinic, P1Dx = 3.002 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5795 (6) ÅCell parameters from 3179 reflections
b = 9.8373 (7) Åθ = 2.9–27.5°
c = 13.6999 (8) ŵ = 17.76 mm1
α = 70.030 (6)°T = 295 K
β = 76.779 (5)°Prism, yellow
γ = 79.362 (6)°0.20 × 0.10 × 0.04 mm
V = 1050.74 (12) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector4848 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3470 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.038
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.9°
ω scanh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −12→11
Tmin = 0.358, Tmax = 1.000l = −17→17
12862 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0612P)2 + 7.0509P] where P = (Fo2 + 2Fc2)/3
4848 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 4.40 e Å3
0 restraintsΔρmin = −1.45 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Hg10.20510 (6)0.31203 (6)0.05498 (4)0.05488 (18)
Hg20.86627 (6)0.16239 (6)0.39910 (4)0.05315 (17)
I10.45868 (12)0.28767 (13)−0.09397 (7)0.0740 (3)
I20.03457 (13)0.49555 (11)0.15600 (8)0.0681 (3)
Cl11.0870 (4)0.1770 (4)0.4659 (3)0.0679 (10)
S10.7709 (5)0.4377 (4)0.5467 (3)0.0681 (10)
O10.6835 (13)0.3252 (12)0.5397 (10)0.083 (3)
N10.0365 (11)0.1207 (10)0.1108 (6)0.040 (2)
N20.2980 (10)0.1073 (11)0.2044 (7)0.041 (2)
C1−0.0913 (14)0.1244 (14)0.0724 (9)0.047 (3)
H1−0.12210.20880.02070.057*
C2−0.1844 (13)0.0080 (15)0.1050 (9)0.046 (3)
H2−0.27650.01530.07770.056*
C3−0.1338 (15)−0.1155 (16)0.1780 (10)0.054 (3)
H3−0.1900−0.19630.20040.065*
C4−0.0009 (14)−0.1216 (14)0.2188 (10)0.052 (3)
H40.0327−0.20570.26980.063*
C50.0836 (12)−0.0018 (12)0.1837 (7)0.036 (2)
C60.2212 (13)−0.0050 (14)0.2305 (9)0.046 (3)
H60.2548−0.09020.28060.056*
C70.4272 (13)0.1129 (13)0.2514 (8)0.039 (2)
C80.4834 (14)−0.0020 (15)0.3326 (9)0.048 (3)
H80.4374−0.08890.35930.058*
C90.6106 (14)0.0163 (16)0.3731 (9)0.054 (3)
H90.6495−0.06000.42720.065*
C100.6798 (13)0.1435 (14)0.3355 (9)0.043 (3)
C110.6269 (15)0.2541 (14)0.2524 (10)0.050 (3)
H110.67600.33930.22340.060*
C120.4978 (16)0.2369 (13)0.2117 (10)0.050 (3)
H120.46050.31240.15650.060*
C130.632 (2)0.541 (2)0.6187 (12)0.092 (6)
H13A0.61480.48520.69220.138*
H13B0.53220.56480.59340.138*
H13C0.67520.62890.60960.138*
C140.774 (2)0.570 (2)0.4243 (12)0.093 (6)
H14A0.84050.53150.37090.140*
H14B0.81750.65310.42450.140*
H14C0.66650.59840.40980.140*
U11U22U33U12U13U23
Hg10.0592 (3)0.0483 (3)0.0548 (3)−0.0123 (2)−0.0089 (2)−0.0109 (2)
Hg20.0496 (3)0.0575 (4)0.0632 (3)−0.0044 (2)−0.0222 (2)−0.0257 (2)
I10.0623 (6)0.0922 (8)0.0572 (5)−0.0182 (5)0.0016 (4)−0.0137 (5)
I20.0842 (7)0.0544 (6)0.0677 (6)0.0013 (5)−0.0185 (5)−0.0232 (4)
Cl10.062 (2)0.064 (2)0.090 (2)−0.0103 (17)−0.0408 (18)−0.0204 (19)
S10.068 (2)0.056 (2)0.084 (2)−0.0134 (18)−0.0129 (18)−0.0236 (19)
O10.079 (7)0.053 (7)0.118 (9)−0.012 (6)−0.014 (6)−0.030 (6)
N10.043 (5)0.039 (6)0.036 (4)−0.007 (4)−0.008 (4)−0.008 (4)
N20.033 (5)0.040 (6)0.047 (5)−0.006 (4)−0.006 (4)−0.010 (4)
C10.043 (6)0.044 (7)0.051 (6)−0.005 (5)−0.005 (5)−0.012 (5)
C20.037 (6)0.061 (8)0.058 (7)−0.001 (5)−0.003 (5)−0.046 (6)
C30.048 (7)0.054 (8)0.066 (8)−0.024 (6)−0.005 (6)−0.019 (6)
C40.050 (7)0.042 (7)0.064 (8)−0.010 (6)−0.013 (6)−0.012 (6)
C50.041 (6)0.040 (6)0.033 (5)−0.014 (5)−0.001 (4)−0.016 (4)
C60.046 (6)0.045 (7)0.047 (6)−0.013 (5)−0.012 (5)−0.008 (5)
C70.040 (6)0.036 (6)0.044 (6)−0.005 (5)−0.004 (4)−0.018 (5)
C80.048 (7)0.054 (8)0.044 (6)−0.015 (6)−0.008 (5)−0.013 (5)
C90.046 (7)0.066 (9)0.048 (6)0.003 (6)−0.017 (5)−0.015 (6)
C100.042 (6)0.047 (7)0.050 (6)−0.004 (5)−0.014 (5)−0.025 (5)
C110.052 (7)0.036 (7)0.065 (7)−0.008 (5)−0.016 (6)−0.016 (6)
C120.070 (8)0.027 (6)0.059 (7)−0.008 (6)−0.031 (6)−0.007 (5)
C130.119 (15)0.087 (14)0.063 (9)−0.042 (11)0.027 (9)−0.028 (9)
C140.131 (15)0.085 (13)0.071 (10)−0.061 (12)0.014 (9)−0.029 (9)
Hg1—I12.6581 (11)C4—H40.9300
Hg1—I22.6684 (12)C5—C61.458 (14)
Hg1—N12.395 (9)C6—H60.9300
Hg1—N22.493 (9)C7—C121.350 (16)
Hg2—Cl12.330 (3)C7—C81.391 (16)
Hg2—C102.052 (10)C8—C91.396 (16)
S1—O11.485 (11)C8—H80.9300
S1—C141.734 (16)C9—C101.370 (18)
S1—C131.766 (19)C9—H90.9300
N1—C11.310 (14)C10—C111.375 (16)
N1—C51.340 (13)C11—C121.408 (16)
N2—C61.293 (14)C11—H110.9300
N2—C71.421 (13)C12—H120.9300
C1—C21.405 (17)C13—H13A0.9600
C1—H10.9300C13—H13B0.9600
C2—C31.356 (18)C13—H13C0.9600
C2—H20.9300C14—H14A0.9600
C3—C41.363 (16)C14—H14B0.9600
C3—H30.9300C14—H14C0.9600
C4—C51.384 (15)
N1—Hg1—N269.6 (3)N2—C6—H6119.1
N1—Hg1—I1114.5 (2)C5—C6—H6119.1
N2—Hg1—I198.0 (2)C12—C7—C8120.1 (10)
N1—Hg1—I2102.0 (2)C12—C7—N2116.4 (10)
N2—Hg1—I2101.1 (2)C8—C7—N2123.4 (10)
I1—Hg1—I2142.80 (4)C7—C8—C9118.4 (11)
C10—Hg2—Cl1177.0 (4)C7—C8—H8120.8
O1—S1—C14103.7 (8)C9—C8—H8120.8
O1—S1—C13107.2 (8)C10—C9—C8121.9 (11)
C14—S1—C1396.1 (9)C10—C9—H9119.1
C1—N1—C5118.4 (9)C8—C9—H9119.1
C1—N1—Hg1125.4 (7)C11—C10—C9119.0 (10)
C5—N1—Hg1116.1 (6)C11—C10—Hg2121.3 (9)
C6—N2—C7124.2 (9)C9—C10—Hg2119.7 (8)
C6—N2—Hg1112.9 (7)C10—C11—C12119.4 (11)
C7—N2—Hg1122.8 (7)C10—C11—H11120.3
N1—C1—C2123.7 (11)C12—C11—H11120.3
N1—C1—H1118.1C7—C12—C11121.2 (11)
C2—C1—H1118.1C7—C12—H12119.4
C3—C2—C1117.0 (11)C11—C12—H12119.4
C3—C2—H2121.5S1—C13—H13A109.5
C1—C2—H2121.5S1—C13—H13B109.5
C4—C3—C2120.2 (11)H13A—C13—H13B109.5
C4—C3—H3119.9S1—C13—H13C109.5
C2—C3—H3119.9H13A—C13—H13C109.5
C3—C4—C5119.6 (11)H13B—C13—H13C109.5
C3—C4—H4120.2S1—C14—H14A109.5
C5—C4—H4120.2S1—C14—H14B109.5
N1—C5—C4121.1 (10)H14A—C14—H14B109.5
N1—C5—C6118.9 (9)S1—C14—H14C109.5
C4—C5—C6119.9 (10)H14A—C14—H14C109.5
N2—C6—C5121.9 (10)H14B—C14—H14C109.5
N2—Hg1—N1—C1177.0 (10)C1—N1—C5—C6−177.2 (11)
I1—Hg1—N1—C1−93.4 (10)Hg1—N1—C5—C65.9 (13)
I2—Hg1—N1—C179.5 (10)C3—C4—C5—N10.5 (19)
N2—Hg1—N1—C5−6.4 (7)C3—C4—C5—C6177.1 (12)
I1—Hg1—N1—C583.2 (8)C7—N2—C6—C5176.5 (10)
I2—Hg1—N1—C5−103.9 (8)Hg1—N2—C6—C5−6.5 (15)
N1—Hg1—N2—C66.6 (8)N1—C5—C6—N20.7 (18)
I1—Hg1—N2—C6−106.7 (8)C4—C5—C6—N2−176.0 (12)
I2—Hg1—N2—C6105.4 (8)C6—N2—C7—C12177.5 (12)
N1—Hg1—N2—C7−176.3 (9)Hg1—N2—C7—C120.8 (15)
I1—Hg1—N2—C770.4 (8)C6—N2—C7—C8−1.3 (18)
I2—Hg1—N2—C7−77.5 (8)Hg1—N2—C7—C8−178.0 (9)
C5—N1—C1—C21.4 (18)C12—C7—C8—C91.7 (19)
Hg1—N1—C1—C2177.9 (9)N2—C7—C8—C9−179.6 (11)
N1—C1—C2—C3−2.0 (19)C8—C9—C10—Hg2180.0 (10)
C1—C2—C3—C41.8 (19)Hg2—C10—C11—C12−179.5 (10)
C1—N1—C5—C4−0.6 (17)N2—C7—C12—C11−180.0 (12)
Hg1—N1—C5—C4−177.4 (9)
D—H···AD—HH···AD···AD—H···A
C8—H8···O1i0.932.543.458 (18)171
C9—H9···Cl1ii0.932.833.625 (13)145
C13—H13C···Cl1iii0.962.833.721 (19)155
Table 1

Selected bond lengths (Å)

Hg1—I12.6581 (11)
Hg1—I22.6684 (12)
Hg1—N12.395 (9)
Hg1—N22.493 (9)
Hg2—Cl12.330 (3)
Hg2—C102.052 (10)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8⋯O1i 0.932.543.458 (18)171
C9—H9⋯Cl1ii 0.932.833.625 (13)145
C13—H13C⋯Cl1iii 0.962.833.721 (19)155

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and characterization of some water soluble Zn(II) complexes with (E)-N-(pyridin-2-ylmethylene)arylamines that regulate tumour cell death by interacting with DNA.

Authors:  Tushar S Basu Baul; Sajal Kundu; Anthony Linden; Nune Raviprakash; Sunil K Manna; M Fátima C Guedes da Silva
Journal:  Dalton Trans       Date:  2013-10-30       Impact factor: 4.390

3.  The influence of counter ion and ligand methyl substitution on the solid-state structures and photophysical properties of mercury(II) complexes with (E)-N-(pyridin-2-ylmethylidene)arylamines.

Authors:  Tushar S Basu Baul; Sajal Kundu; Sivaprasad Mitra; Herbert Höpfl; Edward R T Tiekink; Anthony Linden
Journal:  Dalton Trans       Date:  2012-11-22       Impact factor: 4.390

  3 in total

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