Literature DB >> 24454126

N-[(1,3-Benzodioxol-5-yl)meth-yl]benzene-sulfonamide: an analogue of capsaicin.

Stella H Maganhi1, Maurício T Tavares2, Mariana C F C B Damião2, Roberto Parise Filho2.   

Abstract

The title compound, C14H13NO4S, an analogue of capsaicin, differs from the latter by having a 1,3-benzodioxole ring rather than a 2-meth-oxy-phenol moiety, and having a benzene-sulfonamide group instead of an aliphatic amide chain. The five-membered ring is in an envelope conformation with the methyl-ene C atom lying 0.221 (6) Å out of the plane formed by the other four atoms. The dihedral angle between the phenyl ring and the mean plane of the 1,3-benzodioxole fused-ring system is 84.65 (4)°. In the crystal, mol-ecules aggregate into supra-molecular layers in the ac plane through C-H⋯O, N-H⋯O and C-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 24454126      PMCID: PMC3884350          DOI: 10.1107/S1600536813028481

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and the biological activity of capsaicin, see: Lee et al. (2011 ▶); Malagarie-Cazenave et al. (2011 ▶). For the synthesis and cytoxicity of the title compound, see: De Sá-Junior et al. (2013 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C14H13NO4S M = 291.32 Orthorhombic, a = 18.0158 (4) Å b = 5.9346 (1) Å c = 25.5480 (8) Å V = 2731.51 (11) Å3 Z = 8 Mo Kα radiation μ = 0.25 mm−1 T = 290 K 0.25 × 0.22 × 0.20 mm

Data collection

Nonius KappaCCD diffractometer with Bruker APEXII CCD areadetector Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.930, T max = 0.948 2652 measured reflections 2652 independent reflections 1860 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.149 S = 1.04 2652 reflections 181 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.29 e Å−3 Data collection: COLLECT (Nonius, 1999 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: MarvinSketch (ChemAxon, 2010 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813028481/tk5268sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028481/tk5268Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813028481/tk5268Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H13NO4SDx = 1.417 Mg m3
Mr = 291.32Melting point = 350.1–350.6 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3351 reflections
a = 18.0158 (4) Åθ = 1.4–27.1°
b = 5.9346 (1) ŵ = 0.25 mm1
c = 25.5480 (8) ÅT = 290 K
V = 2731.51 (11) Å3Irregular, colourless
Z = 80.25 × 0.22 × 0.20 mm
F(000) = 1216
Nonius KappaCCD with Bruker APEXII CCD area detector diffractometer2652 independent reflections
Radiation source: fine-focus sealed tube1860 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.000
φ and ω scansθmax = 26.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = 0→22
Tmin = 0.930, Tmax = 0.948k = 0→7
2652 measured reflectionsl = −31→0
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0843P)2 + 0.6245P] where P = (Fo2 + 2Fc2)/3
2652 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.14422 (14)0.0794 (4)0.26877 (9)0.0610 (6)
H1A0.19390.11900.25740.073*
H1B0.1283−0.05070.24870.073*
C20.14588 (11)0.0187 (4)0.32636 (9)0.0493 (5)
C30.17158 (12)−0.1926 (4)0.34057 (10)0.0561 (6)
H30.1836−0.29580.31450.067*
C40.17986 (13)−0.2546 (4)0.39256 (10)0.0596 (6)
H40.1975−0.39620.40190.071*
C50.16096 (13)−0.0985 (4)0.42922 (9)0.0550 (6)
C60.13417 (14)0.1100 (4)0.41568 (9)0.0559 (6)
C70.12552 (13)0.1742 (4)0.36469 (8)0.0547 (6)
H70.10690.31540.35590.066*
C80.1485 (2)0.1023 (6)0.50195 (12)0.0966 (11)
H8A0.19360.17210.51480.116*
H8B0.11320.09480.53060.116*
C90.09760 (11)0.2425 (4)0.15195 (8)0.0492 (5)
C100.02961 (13)0.2300 (4)0.12712 (10)0.0625 (6)
H10−0.00930.32240.13770.075*
C110.01987 (15)0.0799 (5)0.08658 (11)0.0748 (8)
H11−0.02580.07190.06970.090*
C120.07628 (17)−0.0566 (5)0.07097 (11)0.0805 (8)
H120.0689−0.15770.04360.097*
C130.14451 (16)−0.0459 (5)0.09547 (11)0.0806 (9)
H130.1830−0.13900.08450.097*
C140.15560 (13)0.1045 (5)0.13662 (10)0.0647 (7)
H140.20130.11200.15350.078*
O10.18306 (9)0.4975 (3)0.20769 (7)0.0703 (5)
O20.04895 (10)0.5823 (3)0.20637 (6)0.0654 (5)
O30.16399 (11)−0.1167 (3)0.48341 (7)0.0764 (6)
O40.11841 (13)0.2327 (3)0.46019 (6)0.0841 (6)
N10.09406 (10)0.2681 (3)0.25825 (7)0.0558 (5)
H1N0.04050.23230.26300.067*
S10.10836 (3)0.42069 (10)0.20672 (2)0.0518 (2)
U11U22U33U12U13U23
C10.0711 (16)0.0610 (14)0.0509 (14)0.0106 (12)0.0004 (11)−0.0038 (11)
C20.0490 (12)0.0500 (13)0.0487 (13)−0.0012 (10)0.0018 (9)−0.0018 (10)
C30.0558 (13)0.0492 (14)0.0632 (15)0.0037 (10)0.0044 (11)−0.0060 (11)
C40.0576 (14)0.0483 (12)0.0728 (17)0.0033 (11)−0.0017 (12)0.0047 (11)
C50.0579 (13)0.0551 (13)0.0519 (13)−0.0040 (10)−0.0008 (10)0.0085 (11)
C60.0698 (15)0.0511 (13)0.0467 (13)0.0008 (11)0.0029 (11)−0.0035 (10)
C70.0679 (14)0.0463 (12)0.0497 (13)0.0031 (11)0.0018 (11)0.0017 (10)
C80.156 (3)0.084 (2)0.0500 (16)0.010 (2)−0.0048 (18)0.0069 (15)
C90.0487 (12)0.0559 (12)0.0431 (12)0.0012 (10)0.0049 (9)0.0026 (9)
C100.0515 (13)0.0768 (16)0.0592 (14)0.0030 (12)0.0026 (11)−0.0098 (12)
C110.0678 (17)0.0909 (19)0.0657 (17)−0.0066 (14)−0.0029 (13)−0.0167 (15)
C120.099 (2)0.0810 (18)0.0619 (17)0.0034 (17)−0.0010 (15)−0.0185 (14)
C130.091 (2)0.089 (2)0.0620 (17)0.0302 (17)0.0082 (15)−0.0123 (15)
C140.0592 (14)0.0821 (17)0.0526 (14)0.0156 (12)−0.0001 (11)−0.0023 (12)
O10.0522 (10)0.0763 (12)0.0823 (13)−0.0131 (9)0.0035 (8)−0.0066 (9)
O20.0653 (11)0.0623 (11)0.0686 (11)0.0126 (8)0.0045 (8)−0.0066 (8)
O30.1040 (14)0.0704 (12)0.0548 (11)0.0079 (10)−0.0014 (9)0.0142 (8)
O40.1363 (18)0.0690 (12)0.0471 (10)0.0244 (11)−0.0015 (10)−0.0023 (9)
N10.0522 (11)0.0670 (12)0.0482 (11)0.0010 (9)0.0026 (8)0.0001 (9)
S10.0522 (4)0.0525 (4)0.0507 (4)−0.0022 (2)0.0016 (2)−0.0017 (2)
C1—N11.464 (3)C8—H8B0.9700
C1—C21.515 (3)C9—C101.382 (3)
C1—H1A0.9700C9—C141.384 (3)
C1—H1B0.9700C9—S11.765 (2)
C2—C31.385 (3)C10—C111.377 (3)
C2—C71.395 (3)C10—H100.9300
C3—C41.386 (3)C11—C121.360 (4)
C3—H30.9300C11—H110.9300
C4—C51.361 (3)C12—C131.381 (4)
C4—H40.9300C12—H120.9300
C5—C61.372 (3)C13—C141.393 (4)
C5—O31.390 (3)C13—H130.9300
C6—C71.366 (3)C14—H140.9300
C6—O41.380 (3)O1—S11.4210 (17)
C7—H70.9300O2—S11.4372 (18)
C8—O31.411 (4)N1—S11.6186 (19)
C8—O41.425 (3)N1—H1N0.9947
C8—H8A0.9700
N1—C1—C2111.85 (18)C10—C9—C14120.5 (2)
N1—C1—H1A109.2C10—C9—S1119.57 (17)
C2—C1—H1A109.2C14—C9—S1119.74 (18)
N1—C1—H1B109.2C11—C10—C9119.5 (2)
C2—C1—H1B109.2C11—C10—H10120.2
H1A—C1—H1B107.9C9—C10—H10120.2
C3—C2—C7120.2 (2)C12—C11—C10120.7 (2)
C3—C2—C1118.4 (2)C12—C11—H11119.6
C7—C2—C1121.3 (2)C10—C11—H11119.6
C2—C3—C4121.8 (2)C11—C12—C13120.3 (3)
C2—C3—H3119.1C11—C12—H12119.8
C4—C3—H3119.1C13—C12—H12119.8
C5—C4—C3116.9 (2)C12—C13—C14119.9 (2)
C5—C4—H4121.6C12—C13—H13120.0
C3—C4—H4121.6C14—C13—H13120.0
C4—C5—C6121.9 (2)C9—C14—C13119.0 (2)
C4—C5—O3128.5 (2)C9—C14—H14120.5
C6—C5—O3109.6 (2)C13—C14—H14120.5
C7—C6—C5122.1 (2)C5—O3—C8104.8 (2)
C7—C6—O4128.0 (2)C6—O4—C8104.6 (2)
C5—C6—O4109.9 (2)C1—N1—S1118.62 (15)
C6—C7—C2117.0 (2)C1—N1—H1N114.4
C6—C7—H7121.5S1—N1—H1N111.9
C2—C7—H7121.5O1—S1—O2119.43 (12)
O3—C8—O4108.9 (2)O1—S1—N1108.42 (11)
O3—C8—H8A109.9O2—S1—N1105.06 (10)
O4—C8—H8A109.9O1—S1—C9108.06 (10)
O3—C8—H8B109.9O2—S1—C9108.26 (10)
O4—C8—H8B109.9N1—S1—C9106.99 (11)
H8A—C8—H8B108.3
N1—C1—C2—C3160.6 (2)C10—C9—C14—C130.5 (4)
N1—C1—C2—C7−22.4 (3)S1—C9—C14—C13175.8 (2)
C7—C2—C3—C4−1.8 (3)C12—C13—C14—C9−0.5 (4)
C1—C2—C3—C4175.2 (2)C4—C5—O3—C8171.9 (3)
C2—C3—C4—C50.5 (3)C6—C5—O3—C8−8.6 (3)
C3—C4—C5—C60.7 (4)O4—C8—O3—C514.5 (3)
C3—C4—C5—O3−179.9 (2)C7—C6—O4—C8−171.0 (3)
C4—C5—C6—C7−0.6 (4)C5—C6—O4—C89.3 (3)
O3—C5—C6—C7179.8 (2)O3—C8—O4—C6−14.8 (4)
C4—C5—C6—O4179.0 (2)C2—C1—N1—S1155.52 (16)
O3—C5—C6—O4−0.5 (3)C1—N1—S1—O1−53.6 (2)
C5—C6—C7—C2−0.6 (4)C1—N1—S1—O2177.62 (16)
O4—C6—C7—C2179.8 (2)C1—N1—S1—C962.69 (19)
C3—C2—C7—C61.8 (3)C10—C9—S1—O1−149.4 (2)
C1—C2—C7—C6−175.1 (2)C14—C9—S1—O135.3 (2)
C14—C9—C10—C11−0.4 (4)C10—C9—S1—O2−18.7 (2)
S1—C9—C10—C11−175.7 (2)C14—C9—S1—O2165.94 (19)
C9—C10—C11—C120.3 (4)C10—C9—S1—N194.0 (2)
C10—C11—C12—C13−0.3 (5)C14—C9—S1—N1−81.3 (2)
C11—C12—C13—C140.4 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.992.002.945 (3)157
C14—H14···O1ii0.932.593.486 (3)161
C10—H10···Cg1iii0.932.743.563 (3)147
C8—H8B···Cg2iv0.972.823.511 (3)129
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C2–C7 and C9–C14 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O2i 0.992.002.945 (3)157
C14—H14⋯O1ii 0.932.593.486 (3)161
C10—H10⋯Cg1iii 0.932.743.563 (3)147
C8—H8BCg2iv 0.972.823.511 (3)129

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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