Literature DB >> 24454125

1-Acetyl-5-(4-fluoro-phen-yl)-2-sulfanyl-ideneimidazolidin-4-one.

Soh-Ichi Kitoh1, Yijing Feng1, Shuhei Fujinami1, Masaki Ichitani1, Mitsunori Honda1, Ko-Ki Kunimoto1.   

Abstract

In the title compound, C11H9FN2O2S, the 2-sulfanylideneimidazolidin-4-one moiety is essentially planar, with a maximum deviation of 0.0183 (14) Å. The mean plane of this moiety is approximately coplanar with the attached acetyl group and perpendicular to the benzene ring, making dihedral angles of 9.70 (14) and 86.70 (6)°, respectively. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds between the amide NH and acetyl C=O groups, forming a C(6) chain along the a-axis direction.

Entities:  

Year:  2013        PMID: 24454125      PMCID: PMC3884349          DOI: 10.1107/S1600536813028560

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications and the biological activity of 2-sulfanylideneimidazolidin-4-ones, see: Marton et al. (1993 ▶). For the crystal structures of related compounds, see: Casas et al. (1998 ▶); Sulbaran et al. (2007 ▶); Taniguchi et al. (2009 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For hydrogen-bond motifs, see: Etter (1990 ▶). For the synthetic procedure, see: Schlack & Kumpf (1926 ▶).

Experimental

Crystal data

C11H9FN2O2S M = 252.27 Monoclinic, a = 7.1327 (9) Å b = 23.852 (3) Å c = 7.3437 (10) Å β = 113.541 (3)° V = 1145.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 123 K 0.30 × 0.10 × 0.08 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Rigaku, 1998 ▶) T min = 0.829, T max = 0.977 12234 measured reflections 2612 independent reflections 2418 reflections with F 2 > 2σ(F 2) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.082 S = 1.06 2612 reflections 159 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR2008 in Il Milione (Burla et al., 2007 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: CrystalStructure (Rigaku, 2010 ▶). Crystal structure: contains datablock(s) General, I. DOI: 10.1107/S1600536813028560/is5315sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028560/is5315Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813028560/is5315Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9FN2O2SF(000) = 520
Mr = 252.27Dx = 1.463 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ynCell parameters from 4829 reflections
a = 7.1327 (9) Åθ = 3.0–27.5°
b = 23.852 (3) ŵ = 0.29 mm1
c = 7.3437 (10) ÅT = 123 K
β = 113.541 (3)°Prism, colorless
V = 1145.4 (3) Å30.30 × 0.10 × 0.08 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer2418 reflections with F2 > 2σ(F2)
Detector resolution: 7.314 pixels mm-1Rint = 0.024
ω scansθmax = 27.5°, θmin = 3.4°
Absorption correction: multi-scan (REQAB; Rigaku, 1998)h = −9→9
Tmin = 0.829, Tmax = 0.977k = −30→30
12234 measured reflectionsl = −9→8
2612 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0441P)2 + 0.4044P] where P = (Fo2 + 2Fc2)/3
2612 reflections(Δ/σ)max = 0.001
159 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.23 e Å3
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
S10.92257 (4)0.464054 (12)0.18414 (4)0.02040 (10)
F10.66717 (16)0.18005 (4)0.78913 (15)0.0472 (3)
O11.28538 (13)0.37499 (4)0.83947 (13)0.0254 (2)
O20.53419 (13)0.42791 (4)0.53528 (13)0.0240 (2)
N10.81733 (14)0.42098 (4)0.47872 (14)0.0166 (2)
N21.14408 (15)0.41667 (4)0.53118 (15)0.0180 (2)
C10.95711 (17)0.43386 (4)0.39663 (17)0.0164 (3)
C21.14023 (17)0.39352 (5)0.70131 (17)0.0186 (3)
C30.91869 (16)0.39534 (5)0.67800 (16)0.0166 (3)
C40.61024 (17)0.43576 (5)0.41600 (18)0.0187 (3)
C50.49412 (19)0.45857 (6)0.21277 (19)0.0265 (3)
C60.84028 (17)0.33792 (5)0.69937 (17)0.0184 (3)
C70.7772 (2)0.32809 (5)0.8518 (2)0.0264 (3)
C80.7187 (3)0.27457 (6)0.8832 (2)0.0338 (4)
C90.7236 (3)0.23252 (6)0.7578 (3)0.0314 (3)
C100.7823 (3)0.24057 (6)0.6034 (2)0.0304 (3)
C110.8411 (2)0.29430 (5)0.57419 (19)0.0249 (3)
H21.252 (3)0.4205 (7)0.513 (3)0.027 (4)*
H30.90630.42110.78000.0199*
H5A0.34910.46170.18850.0318*
H5B0.50950.43330.11430.0318*
H5C0.54740.49570.20190.0318*
H70.77380.35810.93560.0317*
H80.67650.26730.98840.0406*
H100.78280.21040.51890.0364*
H110.88220.30120.46810.0299*
U11U22U33U12U13U23
S10.02194 (17)0.02105 (16)0.02123 (17)0.00019 (10)0.01181 (13)0.00233 (10)
F10.0632 (7)0.0242 (5)0.0522 (6)−0.0180 (4)0.0208 (5)0.0062 (4)
O10.0181 (5)0.0278 (5)0.0267 (5)0.0001 (4)0.0052 (4)0.0056 (4)
O20.0175 (4)0.0300 (5)0.0283 (5)0.0008 (4)0.0131 (4)0.0028 (4)
N10.0148 (5)0.0173 (5)0.0188 (5)−0.0003 (4)0.0078 (4)0.0014 (4)
N20.0141 (5)0.0196 (5)0.0223 (5)−0.0004 (4)0.0095 (4)−0.0004 (4)
C10.0170 (5)0.0122 (5)0.0220 (6)−0.0019 (4)0.0099 (5)−0.0034 (4)
C20.0183 (6)0.0156 (5)0.0231 (6)−0.0024 (4)0.0094 (5)−0.0016 (4)
C30.0162 (6)0.0163 (6)0.0179 (6)−0.0008 (4)0.0075 (5)0.0006 (4)
C40.0153 (6)0.0183 (6)0.0235 (6)−0.0011 (5)0.0087 (5)−0.0018 (5)
C50.0174 (6)0.0386 (8)0.0229 (6)0.0029 (5)0.0072 (5)0.0036 (5)
C60.0151 (5)0.0180 (6)0.0218 (6)−0.0016 (4)0.0072 (5)0.0006 (5)
C70.0316 (7)0.0243 (7)0.0279 (7)−0.0064 (5)0.0168 (6)−0.0020 (5)
C80.0424 (8)0.0321 (8)0.0323 (7)−0.0116 (6)0.0205 (7)0.0034 (6)
C90.0326 (7)0.0207 (6)0.0370 (8)−0.0097 (6)0.0098 (6)0.0061 (6)
C100.0363 (8)0.0187 (6)0.0353 (8)−0.0058 (6)0.0135 (6)−0.0051 (5)
C110.0284 (7)0.0219 (6)0.0278 (7)−0.0035 (5)0.0146 (6)−0.0022 (5)
S1—C11.6454 (13)C7—C81.391 (2)
F1—C91.3621 (19)C8—C91.372 (3)
O1—C21.2073 (13)C9—C101.370 (3)
O2—C41.2150 (19)C10—C111.392 (2)
N1—C11.3899 (19)N2—H20.84 (2)
N1—C31.4810 (14)C3—H31.000
N1—C41.4053 (16)C5—H5A0.980
N2—C11.3676 (14)C5—H5B0.980
N2—C21.3762 (18)C5—H5C0.980
C2—C31.5206 (18)C7—H70.950
C3—C61.5111 (18)C8—H80.950
C4—C51.4906 (17)C10—H100.950
C6—C71.383 (3)C11—H110.950
C6—C111.3900 (19)
C1—N1—C3111.61 (9)C8—C9—C10123.48 (15)
C1—N1—C4130.13 (10)C9—C10—C11117.85 (14)
C3—N1—C4117.51 (11)C6—C11—C10120.41 (15)
C1—N2—C2114.14 (12)C1—N2—H2123.1 (10)
S1—C1—N1130.27 (8)C2—N2—H2122.7 (10)
S1—C1—N2123.36 (11)N1—C3—H3109.392
N1—C1—N2106.37 (11)C2—C3—H3109.399
O1—C2—N2126.05 (13)C6—C3—H3109.408
O1—C2—C3127.51 (13)C4—C5—H5A109.473
N2—C2—C3106.44 (9)C4—C5—H5B109.477
N1—C3—C2101.43 (11)C4—C5—H5C109.470
N1—C3—C6114.97 (9)H5A—C5—H5B109.474
C2—C3—C6111.93 (10)H5A—C5—H5C109.461
O2—C4—N1116.01 (10)H5B—C5—H5C109.473
O2—C4—C5123.27 (12)C6—C7—H7119.804
N1—C4—C5120.71 (13)C8—C7—H7119.807
C3—C6—C7119.42 (11)C7—C8—H8120.984
C3—C6—C11120.67 (13)C9—C8—H8120.972
C7—C6—C11119.82 (12)C9—C10—H10121.071
C6—C7—C8120.39 (14)C11—C10—H10121.082
C7—C8—C9118.04 (17)C6—C11—H11119.797
F1—C9—C8118.03 (16)C10—C11—H11119.789
F1—C9—C10118.50 (14)
C1—N1—C3—C2−1.25 (11)O1—C2—C3—C6−55.41 (16)
C1—N1—C3—C6−122.21 (10)N2—C2—C3—N10.71 (11)
C3—N1—C1—S1−178.11 (9)N2—C2—C3—C6123.78 (9)
C3—N1—C1—N21.32 (11)N1—C3—C6—C7−126.90 (11)
C1—N1—C4—O2−166.54 (10)N1—C3—C6—C1156.50 (14)
C1—N1—C4—C514.60 (17)C2—C3—C6—C7118.06 (11)
C4—N1—C1—S1−8.49 (18)C2—C3—C6—C11−58.54 (12)
C4—N1—C1—N2170.93 (10)C3—C6—C7—C8−175.27 (9)
C3—N1—C4—O22.57 (15)C3—C6—C11—C10175.46 (9)
C3—N1—C4—C5−176.29 (9)C7—C6—C11—C10−1.12 (16)
C4—N1—C3—C2−172.31 (9)C11—C6—C7—C81.35 (17)
C4—N1—C3—C666.73 (13)C6—C7—C8—C9−0.67 (18)
C1—N2—C2—O1179.24 (10)C7—C8—C9—F1179.71 (11)
C1—N2—C2—C30.04 (12)C7—C8—C9—C10−0.3 (2)
C2—N2—C1—S1178.64 (9)F1—C9—C10—C11−179.49 (10)
C2—N2—C1—N1−0.83 (12)C8—C9—C10—C110.5 (2)
O1—C2—C3—N1−178.48 (12)C9—C10—C11—C60.21 (18)
D—H···AD—HH···AD···AD—H···A
N2—H2···O2i0.84 (2)1.96 (2)2.7836 (16)167 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O2i 0.84 (2)1.96 (2)2.7836 (16)167 (2)

Symmetry code: (i) .

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