| Literature DB >> 24454125 |
Soh-Ichi Kitoh1, Yijing Feng1, Shuhei Fujinami1, Masaki Ichitani1, Mitsunori Honda1, Ko-Ki Kunimoto1.
Abstract
In the title compound, C11H9FN2O2S, the 2-sulfanylideneimidazolidin-4-one moiety is essentially planar, with a maximum deviation of 0.0183 (14) Å. The mean plane of this moiety is approximately coplanar with the attached acetyl group and perpendicular to the benzene ring, making dihedral angles of 9.70 (14) and 86.70 (6)°, respectively. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds between the amide NH and acetyl C=O groups, forming a C(6) chain along the a-axis direction.Entities:
Year: 2013 PMID: 24454125 PMCID: PMC3884349 DOI: 10.1107/S1600536813028560
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H9FN2O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 4829 reflections |
| θ = 3.0–27.5° | |
| µ = 0.29 mm−1 | |
| β = 113.541 (3)° | Prism, colorless |
| 0.30 × 0.10 × 0.08 mm | |
| Rigaku/MSC Mercury CCD diffractometer | 2418 reflections with |
| Detector resolution: 7.314 pixels mm-1 | |
| ω scans | θmax = 27.5°, θmin = 3.4° |
| Absorption correction: multi-scan ( | |
| 12234 measured reflections | |
| 2612 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2612 reflections | (Δ/σ)max = 0.001 |
| 159 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement was performed using all reflections. The weighted |
| S1 | 0.92257 (4) | 0.464054 (12) | 0.18414 (4) | 0.02040 (10) | |
| F1 | 0.66717 (16) | 0.18005 (4) | 0.78913 (15) | 0.0472 (3) | |
| O1 | 1.28538 (13) | 0.37499 (4) | 0.83947 (13) | 0.0254 (2) | |
| O2 | 0.53419 (13) | 0.42791 (4) | 0.53528 (13) | 0.0240 (2) | |
| N1 | 0.81733 (14) | 0.42098 (4) | 0.47872 (14) | 0.0166 (2) | |
| N2 | 1.14408 (15) | 0.41667 (4) | 0.53118 (15) | 0.0180 (2) | |
| C1 | 0.95711 (17) | 0.43386 (4) | 0.39663 (17) | 0.0164 (3) | |
| C2 | 1.14023 (17) | 0.39352 (5) | 0.70131 (17) | 0.0186 (3) | |
| C3 | 0.91869 (16) | 0.39534 (5) | 0.67800 (16) | 0.0166 (3) | |
| C4 | 0.61024 (17) | 0.43576 (5) | 0.41600 (18) | 0.0187 (3) | |
| C5 | 0.49412 (19) | 0.45857 (6) | 0.21277 (19) | 0.0265 (3) | |
| C6 | 0.84028 (17) | 0.33792 (5) | 0.69937 (17) | 0.0184 (3) | |
| C7 | 0.7772 (2) | 0.32809 (5) | 0.8518 (2) | 0.0264 (3) | |
| C8 | 0.7187 (3) | 0.27457 (6) | 0.8832 (2) | 0.0338 (4) | |
| C9 | 0.7236 (3) | 0.23252 (6) | 0.7578 (3) | 0.0314 (3) | |
| C10 | 0.7823 (3) | 0.24057 (6) | 0.6034 (2) | 0.0304 (3) | |
| C11 | 0.8411 (2) | 0.29430 (5) | 0.57419 (19) | 0.0249 (3) | |
| H2 | 1.252 (3) | 0.4205 (7) | 0.513 (3) | 0.027 (4)* | |
| H3 | 0.9063 | 0.4211 | 0.7800 | 0.0199* | |
| H5A | 0.3491 | 0.4617 | 0.1885 | 0.0318* | |
| H5B | 0.5095 | 0.4333 | 0.1143 | 0.0318* | |
| H5C | 0.5474 | 0.4957 | 0.2019 | 0.0318* | |
| H7 | 0.7738 | 0.3581 | 0.9356 | 0.0317* | |
| H8 | 0.6765 | 0.2673 | 0.9884 | 0.0406* | |
| H10 | 0.7828 | 0.2104 | 0.5189 | 0.0364* | |
| H11 | 0.8822 | 0.3012 | 0.4681 | 0.0299* |
| S1 | 0.02194 (17) | 0.02105 (16) | 0.02123 (17) | 0.00019 (10) | 0.01181 (13) | 0.00233 (10) |
| F1 | 0.0632 (7) | 0.0242 (5) | 0.0522 (6) | −0.0180 (4) | 0.0208 (5) | 0.0062 (4) |
| O1 | 0.0181 (5) | 0.0278 (5) | 0.0267 (5) | 0.0001 (4) | 0.0052 (4) | 0.0056 (4) |
| O2 | 0.0175 (4) | 0.0300 (5) | 0.0283 (5) | 0.0008 (4) | 0.0131 (4) | 0.0028 (4) |
| N1 | 0.0148 (5) | 0.0173 (5) | 0.0188 (5) | −0.0003 (4) | 0.0078 (4) | 0.0014 (4) |
| N2 | 0.0141 (5) | 0.0196 (5) | 0.0223 (5) | −0.0004 (4) | 0.0095 (4) | −0.0004 (4) |
| C1 | 0.0170 (5) | 0.0122 (5) | 0.0220 (6) | −0.0019 (4) | 0.0099 (5) | −0.0034 (4) |
| C2 | 0.0183 (6) | 0.0156 (5) | 0.0231 (6) | −0.0024 (4) | 0.0094 (5) | −0.0016 (4) |
| C3 | 0.0162 (6) | 0.0163 (6) | 0.0179 (6) | −0.0008 (4) | 0.0075 (5) | 0.0006 (4) |
| C4 | 0.0153 (6) | 0.0183 (6) | 0.0235 (6) | −0.0011 (5) | 0.0087 (5) | −0.0018 (5) |
| C5 | 0.0174 (6) | 0.0386 (8) | 0.0229 (6) | 0.0029 (5) | 0.0072 (5) | 0.0036 (5) |
| C6 | 0.0151 (5) | 0.0180 (6) | 0.0218 (6) | −0.0016 (4) | 0.0072 (5) | 0.0006 (5) |
| C7 | 0.0316 (7) | 0.0243 (7) | 0.0279 (7) | −0.0064 (5) | 0.0168 (6) | −0.0020 (5) |
| C8 | 0.0424 (8) | 0.0321 (8) | 0.0323 (7) | −0.0116 (6) | 0.0205 (7) | 0.0034 (6) |
| C9 | 0.0326 (7) | 0.0207 (6) | 0.0370 (8) | −0.0097 (6) | 0.0098 (6) | 0.0061 (6) |
| C10 | 0.0363 (8) | 0.0187 (6) | 0.0353 (8) | −0.0058 (6) | 0.0135 (6) | −0.0051 (5) |
| C11 | 0.0284 (7) | 0.0219 (6) | 0.0278 (7) | −0.0035 (5) | 0.0146 (6) | −0.0022 (5) |
| S1—C1 | 1.6454 (13) | C7—C8 | 1.391 (2) |
| F1—C9 | 1.3621 (19) | C8—C9 | 1.372 (3) |
| O1—C2 | 1.2073 (13) | C9—C10 | 1.370 (3) |
| O2—C4 | 1.2150 (19) | C10—C11 | 1.392 (2) |
| N1—C1 | 1.3899 (19) | N2—H2 | 0.84 (2) |
| N1—C3 | 1.4810 (14) | C3—H3 | 1.000 |
| N1—C4 | 1.4053 (16) | C5—H5A | 0.980 |
| N2—C1 | 1.3676 (14) | C5—H5B | 0.980 |
| N2—C2 | 1.3762 (18) | C5—H5C | 0.980 |
| C2—C3 | 1.5206 (18) | C7—H7 | 0.950 |
| C3—C6 | 1.5111 (18) | C8—H8 | 0.950 |
| C4—C5 | 1.4906 (17) | C10—H10 | 0.950 |
| C6—C7 | 1.383 (3) | C11—H11 | 0.950 |
| C6—C11 | 1.3900 (19) | ||
| C1—N1—C3 | 111.61 (9) | C8—C9—C10 | 123.48 (15) |
| C1—N1—C4 | 130.13 (10) | C9—C10—C11 | 117.85 (14) |
| C3—N1—C4 | 117.51 (11) | C6—C11—C10 | 120.41 (15) |
| C1—N2—C2 | 114.14 (12) | C1—N2—H2 | 123.1 (10) |
| S1—C1—N1 | 130.27 (8) | C2—N2—H2 | 122.7 (10) |
| S1—C1—N2 | 123.36 (11) | N1—C3—H3 | 109.392 |
| N1—C1—N2 | 106.37 (11) | C2—C3—H3 | 109.399 |
| O1—C2—N2 | 126.05 (13) | C6—C3—H3 | 109.408 |
| O1—C2—C3 | 127.51 (13) | C4—C5—H5A | 109.473 |
| N2—C2—C3 | 106.44 (9) | C4—C5—H5B | 109.477 |
| N1—C3—C2 | 101.43 (11) | C4—C5—H5C | 109.470 |
| N1—C3—C6 | 114.97 (9) | H5A—C5—H5B | 109.474 |
| C2—C3—C6 | 111.93 (10) | H5A—C5—H5C | 109.461 |
| O2—C4—N1 | 116.01 (10) | H5B—C5—H5C | 109.473 |
| O2—C4—C5 | 123.27 (12) | C6—C7—H7 | 119.804 |
| N1—C4—C5 | 120.71 (13) | C8—C7—H7 | 119.807 |
| C3—C6—C7 | 119.42 (11) | C7—C8—H8 | 120.984 |
| C3—C6—C11 | 120.67 (13) | C9—C8—H8 | 120.972 |
| C7—C6—C11 | 119.82 (12) | C9—C10—H10 | 121.071 |
| C6—C7—C8 | 120.39 (14) | C11—C10—H10 | 121.082 |
| C7—C8—C9 | 118.04 (17) | C6—C11—H11 | 119.797 |
| F1—C9—C8 | 118.03 (16) | C10—C11—H11 | 119.789 |
| F1—C9—C10 | 118.50 (14) | ||
| C1—N1—C3—C2 | −1.25 (11) | O1—C2—C3—C6 | −55.41 (16) |
| C1—N1—C3—C6 | −122.21 (10) | N2—C2—C3—N1 | 0.71 (11) |
| C3—N1—C1—S1 | −178.11 (9) | N2—C2—C3—C6 | 123.78 (9) |
| C3—N1—C1—N2 | 1.32 (11) | N1—C3—C6—C7 | −126.90 (11) |
| C1—N1—C4—O2 | −166.54 (10) | N1—C3—C6—C11 | 56.50 (14) |
| C1—N1—C4—C5 | 14.60 (17) | C2—C3—C6—C7 | 118.06 (11) |
| C4—N1—C1—S1 | −8.49 (18) | C2—C3—C6—C11 | −58.54 (12) |
| C4—N1—C1—N2 | 170.93 (10) | C3—C6—C7—C8 | −175.27 (9) |
| C3—N1—C4—O2 | 2.57 (15) | C3—C6—C11—C10 | 175.46 (9) |
| C3—N1—C4—C5 | −176.29 (9) | C7—C6—C11—C10 | −1.12 (16) |
| C4—N1—C3—C2 | −172.31 (9) | C11—C6—C7—C8 | 1.35 (17) |
| C4—N1—C3—C6 | 66.73 (13) | C6—C7—C8—C9 | −0.67 (18) |
| C1—N2—C2—O1 | 179.24 (10) | C7—C8—C9—F1 | 179.71 (11) |
| C1—N2—C2—C3 | 0.04 (12) | C7—C8—C9—C10 | −0.3 (2) |
| C2—N2—C1—S1 | 178.64 (9) | F1—C9—C10—C11 | −179.49 (10) |
| C2—N2—C1—N1 | −0.83 (12) | C8—C9—C10—C11 | 0.5 (2) |
| O1—C2—C3—N1 | −178.48 (12) | C9—C10—C11—C6 | 0.21 (18) |
| H··· | ||||
| N2—H2···O2i | 0.84 (2) | 1.96 (2) | 2.7836 (16) | 167 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2⋯O2i | 0.84 (2) | 1.96 (2) | 2.7836 (16) | 167 (2) |
Symmetry code: (i) .