Literature DB >> 24454123

2-[(1H-Pyrrol-2-yl)meth-yl]-1H-pyrrole.

Chong-Hyeak Kim1, Yea-Sel Jeon2, Vincent Lynch3, Jonathan L Sessler3, Kwang-Jin Hwang2.   

Abstract

In the title compound, C9H10N2, the two pyrrole ring planes are twisted by a dihedral angle of 69.07 (16)° and the C-C-C methane angle is 115.1 (2)°. In the crystal, mol-ecules are connected into layers in the bc plane by N-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 24454123      PMCID: PMC3884347          DOI: 10.1107/S1600536813028365

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthesis of symmetric and non-symmetric porphyrins, see: Shanmugathasan et al. (2000 ▶); Bonifazi et al. (2005 ▶); Fendt et al. (2009 ▶). For their applications as organometallic ligands, see: Ganesan et al. (2001 ▶); Gao et al. (2004 ▶).

Experimental

Crystal data

C9H10N2 M = 146.19 Monoclinic, a = 6.048 (3) Å b = 7.312 (4) Å c = 9.024 (5) Å β = 100.78 (1)° V = 392.0 (4) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 153 K 0.32 × 0.08 × 0.06 mm

Data collection

Rigaku SCX-Mini diffractometer with Mercury 2 CCD Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.976, T max = 0.996 4179 measured reflections 1786 independent reflections 1374 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.132 S = 1.05 1786 reflections 100 parameters 61 restraints H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXTL/PC (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC; software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) hkj, I. DOI: 10.1107/S1600536813028365/tk5264sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028365/tk5264Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813028365/tk5264Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N2F(000) = 156
Mr = 146.19Dx = 1.238 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ybCell parameters from 4189 reflections
a = 6.048 (3) Åθ = 3.0–27.5°
b = 7.312 (4) ŵ = 0.08 mm1
c = 9.024 (5) ÅT = 153 K
β = 100.78 (1)°Needle, colourless
V = 392.0 (4) Å30.32 × 0.08 × 0.06 mm
Z = 2
Rigaku SCX-Mini with Mercury 2 CCD diffractometer1786 independent reflections
Radiation source: fine-focus sealed tube1374 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.063
ω scansθmax = 27.5°, θmin = 3.4°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −7→7
Tmin = 0.976, Tmax = 0.996k = −9→9
4179 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.132w = 1/[σ2(Fo2) + (0.049P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
1786 reflectionsΔρmax = 0.19 e Å3
100 parametersΔρmin = −0.23 e Å3
61 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The direction of the twofold screw axis could not be reliably determined.
xyzUiso*/Ueq
C10.2619 (4)−0.0035 (4)0.5615 (3)0.0353 (6)
H10.3300−0.04090.66030.042*
C20.3488 (4)0.1182 (4)0.4732 (3)0.0331 (6)
H20.48870.18020.49910.040*
C30.1930 (4)0.1352 (3)0.3367 (3)0.0298 (6)
H30.20880.21090.25380.036*
C40.0136 (4)0.0222 (4)0.3451 (2)0.0284 (5)
C5−0.2014 (4)−0.0146 (4)0.2387 (2)0.0348 (6)
H5A−0.32670.03740.28180.042*
H5B−0.2242−0.14860.23100.042*
C6−0.2144 (4)0.0606 (3)0.0837 (3)0.0301 (6)
C7−0.3568 (4)0.1863 (4)0.0037 (3)0.0342 (6)
H7−0.47210.25160.03960.041*
C8−0.3029 (4)0.2019 (4)−0.1402 (3)0.0362 (6)
H8−0.37610.2785−0.21950.043*
C9−0.1268 (4)0.0876 (4)−0.1462 (2)0.0367 (6)
H9−0.05300.0711−0.22940.044*
N10.0597 (4)−0.0620 (3)0.4825 (2)0.0344 (6)
H1N−0.0283−0.14230.51530.041*
N2−0.0764 (3)0.0011 (3)−0.0094 (2)0.0336 (5)
H2N0.0302−0.08130.01480.040*
U11U22U33U12U13U23
C10.0380 (14)0.0427 (15)0.0244 (12)0.0079 (13)0.0037 (11)−0.0002 (12)
C20.0322 (13)0.0322 (14)0.0356 (13)−0.0001 (11)0.0082 (11)−0.0078 (11)
C30.0366 (13)0.0265 (13)0.0292 (12)−0.0002 (10)0.0135 (11)0.0000 (10)
C40.0349 (12)0.0269 (13)0.0249 (11)0.0027 (10)0.0096 (10)0.0001 (9)
C50.0311 (12)0.0358 (14)0.0388 (14)−0.0030 (11)0.0103 (11)0.0009 (11)
C60.0281 (12)0.0290 (14)0.0322 (13)−0.0035 (10)0.0030 (10)−0.0048 (10)
C70.0248 (13)0.0328 (14)0.0438 (15)0.0010 (11)0.0031 (11)0.0001 (11)
C80.0343 (14)0.0296 (14)0.0394 (14)−0.0002 (11)−0.0070 (12)0.0034 (11)
C90.0459 (14)0.0375 (16)0.0248 (13)−0.0032 (13)0.0016 (11)−0.0026 (11)
N10.0388 (12)0.0334 (13)0.0323 (11)−0.0030 (10)0.0100 (10)0.0038 (9)
N20.0371 (11)0.0287 (11)0.0345 (11)0.0064 (10)0.0058 (9)0.0006 (9)
C1—C21.363 (4)C5—H5B0.9900
C1—N11.364 (3)C6—N21.361 (3)
C1—H10.9500C6—C71.370 (3)
C2—C31.410 (3)C7—C81.402 (3)
C2—H20.9500C7—H70.9500
C3—C41.377 (3)C8—C91.363 (3)
C3—H30.9500C8—H80.9500
C4—N11.365 (3)C9—N21.369 (3)
C4—C51.490 (3)C9—H90.9500
C5—C61.491 (3)N1—H1N0.8800
C5—H5A0.9900N2—H2N0.8800
C2—C1—N1107.8 (2)N2—C6—C7106.7 (2)
C2—C1—H1126.1N2—C6—C5122.0 (2)
N1—C1—H1126.1C7—C6—C5131.2 (2)
C1—C2—C3107.5 (2)C6—C7—C8108.1 (2)
C1—C2—H2126.3C6—C7—H7125.9
C3—C2—H2126.3C8—C7—H7125.9
C4—C3—C2107.7 (2)C9—C8—C7107.8 (2)
C4—C3—H3126.2C9—C8—H8126.1
C2—C3—H3126.2C7—C8—H8126.1
N1—C4—C3107.0 (2)C8—C9—N2107.0 (2)
N1—C4—C5120.6 (2)C8—C9—H9126.5
C3—C4—C5132.4 (2)N2—C9—H9126.5
C4—C5—C6115.1 (2)C1—N1—C4110.1 (2)
C4—C5—H5A108.5C1—N1—H1N124.9
C6—C5—H5A108.5C4—N1—H1N124.9
C4—C5—H5B108.5C6—N2—C9110.5 (2)
C6—C5—H5B108.5C6—N2—H2N124.8
H5A—C5—H5B107.5C9—N2—H2N124.8
N1—C1—C2—C30.5 (3)C5—C6—C7—C8−177.2 (2)
C1—C2—C3—C4−0.1 (3)C6—C7—C8—C9−0.7 (3)
C2—C3—C4—N1−0.4 (3)C7—C8—C9—N21.1 (3)
C2—C3—C4—C5178.4 (3)C2—C1—N1—C4−0.8 (3)
N1—C4—C5—C6−170.1 (2)C3—C4—N1—C10.7 (3)
C3—C4—C5—C611.2 (4)C5—C4—N1—C1−178.3 (2)
C4—C5—C6—N264.4 (3)C7—C6—N2—C90.6 (3)
C4—C5—C6—C7−118.6 (3)C5—C6—N2—C9178.2 (2)
N2—C6—C7—C80.1 (3)C8—C9—N2—C6−1.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cg1i0.882.533.357 (3)156
N2—H2N···Cg2ii0.882.533.363 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the N1/C1–C4 and N2/C6–C9 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1NCg1i 0.882.533.357 (3)156
N2—H2NCg2ii 0.882.533.363 (3)159

Symmetry codes: (i) ; (ii) .

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