| Literature DB >> 24454106 |
Yoann Rousselin1, Alexandre Clavel2, Isabelle Bonnaventure2.
Abstract
The structure of the title compound [alternatively called (R)-(-)-1-aza-bicyclo-[2.2.2]octan-3-ol], C7H13NO, at 100 K has hexa-gonal (P61) symmetry. The structure shows a twist along the C-N pseudo-threefold axis. In the crystal, mol-ecules are linked via O-H⋯N hydrogen bonds, forming infinite chains along the c-axis direction. The crystal studied was twinned by merohedry (twin law: 010, 100, 00-1; population: 0.925:0.075).Entities:
Year: 2013 PMID: 24454106 PMCID: PMC3884330 DOI: 10.1107/S1600536813026998
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H13NO | |
| Melting point: 492(2) K | |
| Hexagonal, | Cu |
| µ = 0.67 mm−1 | |
| Prism, clear light colourless | |
| 0.58 × 0.44 × 0.32 mm | |
| Bruker D8 VENTURE diffractometer | 1240 independent reflections |
| Radiation source: sealed X-ray tube, high brilliance microfocus sealed tube, Cu | 1240 reflections with |
| Graphite monochromator | |
| Detector resolution: 1024 x 1024 pixels mm-1 | θmax = 69.2°, θmin = 4.4° |
| φ and ω scans | |
| Absorption correction: numerical ( | |
| 15447 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.23 e Å−3 | |
| 1240 reflections | Δρmin = −0.12 e Å−3 |
| 85 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.0156 (15) |
| 0 constraints | Absolute structure: Parsons & Flack (2004). |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.01 (4) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refined as a 2-component twin. |
| O1 | −0.1928 (2) | 0.4528 (2) | 0.48963 (4) | 0.0175 (3) | |
| H1 | −0.2253 | 0.4264 | 0.4622 | 0.026* | |
| N1 | 0.3057 (3) | 0.6832 (3) | 0.56404 (5) | 0.0157 (4) | |
| C2 | 0.5095 (3) | 0.8018 (3) | 0.48879 (6) | 0.0166 (4) | |
| H2A | 0.5325 | 0.9500 | 0.4722 | 0.020* | |
| H2B | 0.6378 | 0.7625 | 0.4786 | 0.020* | |
| C4 | 0.0565 (3) | 0.6495 (3) | 0.49520 (5) | 0.0149 (4) | |
| H4 | 0.0812 | 0.7999 | 0.4785 | 0.018* | |
| C1 | 0.5354 (4) | 0.8550 (4) | 0.53973 (6) | 0.0208 (4) | |
| H1A | 0.6752 | 0.8380 | 0.5515 | 0.025* | |
| H1B | 0.5744 | 1.0283 | 0.5450 | 0.025* | |
| C7 | 0.2139 (3) | 0.3542 (3) | 0.50634 (5) | 0.0159 (4) | |
| H7A | 0.3369 | 0.3067 | 0.4966 | 0.019* | |
| H7B | 0.0450 | 0.2111 | 0.5013 | 0.019* | |
| C5 | 0.0986 (4) | 0.7091 (4) | 0.54597 (5) | 0.0188 (4) | |
| H5A | 0.1340 | 0.8814 | 0.5510 | 0.023* | |
| H5B | −0.0557 | 0.5956 | 0.5624 | 0.023* | |
| C3 | 0.2487 (3) | 0.5801 (3) | 0.47977 (6) | 0.0141 (4) | |
| H3 | 0.2279 | 0.5406 | 0.4471 | 0.017* | |
| C6 | 0.2509 (4) | 0.4253 (4) | 0.55649 (6) | 0.0204 (4) | |
| H6A | 0.0984 | 0.3095 | 0.5732 | 0.024* | |
| H6B | 0.3897 | 0.4068 | 0.5684 | 0.024* |
| O1 | 0.0134 (6) | 0.0222 (6) | 0.0150 (6) | 0.0076 (5) | −0.0012 (4) | −0.0004 (5) |
| N1 | 0.0176 (7) | 0.0155 (8) | 0.0128 (7) | 0.0074 (6) | −0.0005 (6) | −0.0014 (5) |
| C2 | 0.0149 (8) | 0.0186 (9) | 0.0145 (8) | 0.0069 (7) | 0.0009 (7) | 0.0010 (6) |
| C4 | 0.0150 (8) | 0.0161 (8) | 0.0138 (8) | 0.0079 (7) | −0.0002 (6) | 0.0006 (7) |
| C1 | 0.0176 (9) | 0.0215 (9) | 0.0164 (9) | 0.0045 (8) | −0.0020 (6) | −0.0034 (7) |
| C7 | 0.0150 (8) | 0.0151 (8) | 0.0177 (8) | 0.0077 (7) | −0.0012 (6) | −0.0028 (7) |
| C5 | 0.0207 (9) | 0.0237 (9) | 0.0153 (8) | 0.0135 (8) | −0.0006 (7) | −0.0042 (7) |
| C3 | 0.0135 (8) | 0.0158 (8) | 0.0124 (8) | 0.0068 (7) | −0.0011 (6) | −0.0024 (7) |
| C6 | 0.0292 (9) | 0.0186 (9) | 0.0159 (9) | 0.0139 (8) | −0.0003 (8) | 0.0013 (7) |
| O1—H1 | 0.8400 | C1—H1A | 0.9900 |
| O1—C4 | 1.423 (2) | C1—H1B | 0.9900 |
| N1—C1 | 1.475 (2) | C7—H7A | 0.9900 |
| N1—C5 | 1.475 (2) | C7—H7B | 0.9900 |
| N1—C6 | 1.479 (2) | C7—C3 | 1.530 (2) |
| C2—H2A | 0.9900 | C7—C6 | 1.546 (2) |
| C2—H2B | 0.9900 | C5—H5A | 0.9900 |
| C2—C1 | 1.548 (2) | C5—H5B | 0.9900 |
| C2—C3 | 1.536 (2) | C3—H3 | 1.0000 |
| C4—H4 | 1.0000 | C6—H6A | 0.9900 |
| C4—C5 | 1.552 (2) | C6—H6B | 0.9900 |
| C4—C3 | 1.528 (2) | ||
| C4—O1—H1 | 109.5 | C3—C7—H7A | 110.1 |
| C1—N1—C6 | 108.86 (15) | C3—C7—H7B | 110.1 |
| C5—N1—C1 | 108.73 (14) | C3—C7—C6 | 107.96 (13) |
| C5—N1—C6 | 108.72 (14) | C6—C7—H7A | 110.1 |
| H2A—C2—H2B | 108.4 | C6—C7—H7B | 110.1 |
| C1—C2—H2A | 110.0 | N1—C5—C4 | 112.56 (14) |
| C1—C2—H2B | 110.0 | N1—C5—H5A | 109.1 |
| C3—C2—H2A | 110.0 | N1—C5—H5B | 109.1 |
| C3—C2—H2B | 110.0 | C4—C5—H5A | 109.1 |
| C3—C2—C1 | 108.29 (15) | C4—C5—H5B | 109.1 |
| O1—C4—H4 | 109.6 | H5A—C5—H5B | 107.8 |
| O1—C4—C5 | 107.46 (13) | C2—C3—H3 | 109.9 |
| O1—C4—C3 | 112.96 (14) | C4—C3—C2 | 108.41 (14) |
| C5—C4—H4 | 109.6 | C4—C3—C7 | 109.25 (14) |
| C3—C4—H4 | 109.6 | C4—C3—H3 | 109.9 |
| C3—C4—C5 | 107.45 (13) | C7—C3—C2 | 109.45 (14) |
| N1—C1—C2 | 111.72 (14) | C7—C3—H3 | 109.9 |
| N1—C1—H1A | 109.3 | N1—C6—C7 | 112.19 (14) |
| N1—C1—H1B | 109.3 | N1—C6—H6A | 109.2 |
| C2—C1—H1A | 109.3 | N1—C6—H6B | 109.2 |
| C2—C1—H1B | 109.3 | C7—C6—H6A | 109.2 |
| H1A—C1—H1B | 107.9 | C7—C6—H6B | 109.2 |
| H7A—C7—H7B | 108.4 | H6A—C6—H6B | 107.9 |
| O1—C4—C5—N1 | 122.04 (17) | C5—C4—C3—C2 | −59.75 (17) |
| O1—C4—C3—C2 | −178.09 (13) | C5—C4—C3—C7 | 59.46 (17) |
| O1—C4—C3—C7 | −58.88 (17) | C3—C2—C1—N1 | −0.9 (2) |
| C1—N1—C5—C4 | 59.38 (18) | C3—C4—C5—N1 | 0.20 (19) |
| C1—N1—C6—C7 | −59.78 (19) | C3—C7—C6—N1 | 0.4 (2) |
| C1—C2—C3—C4 | 60.54 (19) | C6—N1—C1—C2 | 59.72 (19) |
| C1—C2—C3—C7 | −58.55 (18) | C6—N1—C5—C4 | −59.01 (19) |
| C5—N1—C1—C2 | −58.6 (2) | C6—C7—C3—C2 | 58.56 (18) |
| C5—N1—C6—C7 | 58.53 (19) | C6—C7—C3—C4 | −60.01 (17) |
| H··· | ||||
| O1—H1···N1i | 0.84 | 2.00 | 2.8366 (19) | 176 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N1i | 0.84 | 2.00 | 2.8366 (19) | 176 |
Symmetry code: (i) .