Literature DB >> 24454082

2,15-Dioxa-7,18,19,20,23-penta-aza-hepta-cyclo-[21.6.1.1(17,20).0(1,8).0(3,7).0(9,14).0(24,29)]hentriaconta-9,11,13,17(31),18,24,26,28-octaen-30-one.

Govindarajulu Rangabashyam Subhashree1, Santhanagopalan Purushothaman2, Raghavachary Raghunathan2, Devadasan Velmurugan3, Dasararaju Gayathri4.   

Abstract

In the title compound, C24H23N5O3, the oxindole ring system is nearly planar, with a dihedral angle between the two fused rings of 3.3 (1)°. In the fused pyrrolo-oxazole ring system, the oxazole and pyrrolidine rings adopt envelope conformations with the spiro C atom and one of the methyl-ene C atoms, respectively, as the flap atoms. In the crystal, mol-ecules are linked into a helical chain along the b axis via C-H⋯O inter-actions generating R 2 (1)(7) and R 2 (2)(8) ring motifs.

Entities:  

Year:  2013        PMID: 24454082      PMCID: PMC3884306          DOI: 10.1107/S1600536813027396

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrrole, oxazole and indole derivatives, see: Fernandes et al. (2004 ▶); Jiang et al. (2004 ▶). For a related crystal structure, see: Narayanan et al. (2013 ▶).

Experimental

Crystal data

C24H23N5O3 M = 429.47 Monoclinic, a = 9.273 (5) Å b = 10.983 (5) Å c = 20.096 (5) Å β = 90.038 (5)° V = 2046.7 (15) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.653, T max = 0.746 18864 measured reflections 5113 independent reflections 3845 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.146 S = 1.01 5113 reflections 289 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813027396/is5309sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813027396/is5309Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813027396/is5309Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H23N5O3F(000) = 904
Mr = 429.47Dx = 1.394 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5113 reflections
a = 9.273 (5) Åθ = 2.0–28.4°
b = 10.983 (5) ŵ = 0.10 mm1
c = 20.096 (5) ÅT = 293 K
β = 90.038 (5)°Block, colourless
V = 2046.7 (15) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer5113 independent reflections
Radiation source: fine-focus sealed tube3845 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω and φ scansθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −12→12
Tmin = 0.653, Tmax = 0.746k = −12→14
18864 measured reflectionsl = −25→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0709P)2 + 0.8032P] where P = (Fo2 + 2Fc2)/3
5113 reflections(Δ/σ)max < 0.001
289 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.14019 (16)0.05291 (14)0.29426 (8)0.0343 (3)
C20.12581 (16)−0.13095 (15)0.34750 (8)0.0345 (3)
C30.09293 (19)−0.25119 (17)0.36051 (10)0.0439 (4)
H30.0563−0.30210.32760.053*
C40.1166 (2)−0.29295 (19)0.42455 (11)0.0523 (5)
H40.0961−0.37370.43480.063*
C50.1700 (2)−0.2177 (2)0.47336 (10)0.0551 (5)
H50.1858−0.24830.51590.066*
C60.2005 (2)−0.09606 (19)0.45972 (9)0.0481 (4)
H60.2342−0.04470.49310.058*
C70.17987 (16)−0.05276 (15)0.39565 (8)0.0358 (3)
C80.19783 (16)0.07191 (14)0.36545 (8)0.0339 (3)
C90.18801 (18)0.20933 (17)0.45133 (9)0.0414 (4)
H90.15640.16900.49230.050*
C100.1736 (2)0.34643 (19)0.45780 (11)0.0542 (5)
H10A0.08880.37540.43440.065*
H10B0.16670.37020.50420.065*
C110.3081 (3)0.3960 (2)0.42698 (13)0.0631 (6)
H11A0.33400.47410.44620.076*
H11B0.29760.40490.37920.076*
C120.4193 (2)0.29847 (19)0.44428 (10)0.0508 (5)
H12A0.50020.30150.41380.061*
H12B0.45490.30950.48930.061*
C130.34670 (17)0.13335 (15)0.36914 (8)0.0353 (3)
H130.34730.20220.33810.042*
C140.48023 (16)0.05760 (15)0.35651 (8)0.0346 (3)
C150.52497 (18)−0.02832 (17)0.40269 (9)0.0420 (4)
H150.4738−0.03650.44220.050*
C160.64310 (19)−0.10212 (19)0.39183 (10)0.0480 (4)
H160.6693−0.16040.42320.058*
C170.7216 (2)−0.0889 (2)0.33447 (11)0.0544 (5)
H170.8000−0.13960.32640.065*
C180.6847 (2)−0.0009 (2)0.28880 (10)0.0512 (5)
H180.74050.00990.25080.061*
C190.56425 (17)0.07204 (15)0.29935 (8)0.0371 (4)
C200.5354 (2)0.13510 (18)0.18557 (9)0.0469 (4)
H20A0.62910.10040.17560.056*
H20B0.52490.20930.15980.056*
C210.4204 (2)0.04717 (17)0.16601 (9)0.0425 (4)
C220.37870 (18)−0.05874 (16)0.19571 (8)0.0382 (4)
H220.4218−0.09760.23170.046*
C230.15348 (19)−0.18146 (16)0.18336 (9)0.0405 (4)
H23A0.1993−0.24650.20830.049*
H23B0.1060−0.21700.14500.049*
C240.04305 (17)−0.11776 (16)0.22683 (8)0.0384 (4)
H24A−0.0017−0.05270.20150.046*
H24B−0.0318−0.17540.23880.046*
N10.10500 (14)−0.06718 (12)0.28709 (7)0.0343 (3)
N20.34184 (15)0.18234 (14)0.43800 (7)0.0392 (3)
N30.3288 (2)0.07077 (18)0.11524 (9)0.0630 (5)
N40.2310 (2)−0.01524 (18)0.11278 (9)0.0621 (5)
N50.26167 (16)−0.09446 (14)0.16155 (7)0.0408 (3)
O10.12691 (15)0.13061 (11)0.25218 (6)0.0473 (3)
O20.10994 (12)0.16351 (11)0.39546 (6)0.0419 (3)
O30.52789 (14)0.16379 (11)0.25560 (6)0.0445 (3)
U11U22U33U12U13U23
C10.0311 (7)0.0327 (8)0.0390 (8)0.0058 (6)−0.0041 (6)−0.0042 (6)
C20.0289 (7)0.0377 (8)0.0369 (8)0.0034 (6)0.0002 (6)0.0002 (6)
C30.0418 (9)0.0390 (9)0.0510 (10)−0.0013 (7)0.0015 (7)−0.0013 (8)
C40.0520 (10)0.0443 (10)0.0607 (12)0.0003 (8)0.0091 (9)0.0121 (9)
C50.0568 (11)0.0630 (13)0.0456 (11)0.0005 (10)0.0025 (9)0.0183 (9)
C60.0483 (10)0.0574 (11)0.0385 (9)−0.0030 (8)−0.0035 (8)0.0037 (8)
C70.0308 (7)0.0399 (9)0.0366 (8)0.0009 (6)−0.0002 (6)−0.0002 (7)
C80.0319 (7)0.0343 (8)0.0356 (8)0.0041 (6)−0.0028 (6)−0.0055 (6)
C90.0382 (8)0.0478 (10)0.0382 (9)−0.0004 (7)0.0018 (7)−0.0065 (7)
C100.0558 (11)0.0492 (11)0.0576 (12)0.0085 (9)−0.0027 (9)−0.0204 (9)
C110.0768 (15)0.0423 (11)0.0701 (14)−0.0039 (10)0.0060 (11)−0.0097 (10)
C120.0473 (10)0.0571 (12)0.0481 (10)−0.0134 (9)0.0030 (8)−0.0109 (9)
C130.0351 (8)0.0342 (8)0.0364 (8)0.0017 (6)−0.0016 (6)−0.0018 (6)
C140.0293 (7)0.0356 (8)0.0390 (8)−0.0007 (6)−0.0051 (6)−0.0050 (6)
C150.0394 (8)0.0490 (10)0.0377 (9)0.0038 (7)−0.0033 (7)0.0000 (7)
C160.0417 (9)0.0525 (11)0.0497 (11)0.0107 (8)−0.0111 (8)0.0049 (8)
C170.0377 (9)0.0632 (13)0.0624 (12)0.0178 (9)−0.0008 (8)0.0031 (10)
C180.0396 (9)0.0613 (12)0.0527 (11)0.0057 (8)0.0088 (8)0.0031 (9)
C190.0344 (8)0.0353 (8)0.0416 (9)−0.0025 (6)−0.0060 (6)−0.0004 (7)
C200.0514 (10)0.0455 (10)0.0437 (10)−0.0083 (8)0.0048 (8)0.0087 (8)
C210.0461 (9)0.0436 (9)0.0379 (9)−0.0018 (7)0.0018 (7)0.0051 (7)
C220.0375 (8)0.0390 (9)0.0382 (9)0.0014 (7)−0.0012 (7)0.0005 (7)
C230.0431 (9)0.0373 (9)0.0411 (9)−0.0044 (7)−0.0049 (7)−0.0062 (7)
C240.0351 (8)0.0410 (9)0.0390 (9)−0.0038 (7)−0.0076 (7)−0.0040 (7)
N10.0353 (6)0.0328 (7)0.0346 (7)−0.0012 (5)−0.0045 (5)−0.0035 (5)
N20.0377 (7)0.0445 (8)0.0355 (7)−0.0011 (6)0.0009 (6)−0.0070 (6)
N30.0723 (12)0.0685 (12)0.0481 (10)−0.0187 (10)−0.0146 (8)0.0199 (9)
N40.0712 (11)0.0696 (12)0.0454 (9)−0.0163 (10)−0.0184 (8)0.0174 (9)
N50.0442 (8)0.0435 (8)0.0348 (7)−0.0030 (6)−0.0020 (6)−0.0017 (6)
O10.0613 (8)0.0359 (6)0.0447 (7)0.0082 (6)−0.0128 (6)0.0028 (5)
O20.0372 (6)0.0436 (7)0.0448 (7)0.0082 (5)−0.0033 (5)−0.0134 (5)
O30.0525 (7)0.0382 (6)0.0429 (7)−0.0017 (5)0.0005 (5)0.0035 (5)
C1—O11.208 (2)C13—C141.513 (2)
C1—N11.366 (2)C13—H130.9800
C1—C81.541 (2)C14—C151.387 (2)
C2—C31.380 (3)C14—C191.397 (2)
C2—C71.387 (2)C15—C161.380 (3)
C2—N11.415 (2)C15—H150.9300
C3—C41.384 (3)C16—C171.371 (3)
C3—H30.9300C16—H160.9300
C4—C51.375 (3)C17—C181.376 (3)
C4—H40.9300C17—H170.9300
C5—C61.393 (3)C18—C191.391 (3)
C5—H50.9300C18—H180.9300
C6—C71.386 (2)C19—O31.379 (2)
C6—H60.9300C20—O31.444 (2)
C7—C81.507 (2)C20—C211.491 (3)
C8—O21.4285 (19)C20—H20A0.9700
C8—C131.538 (2)C20—H20B0.9700
C9—O21.427 (2)C21—N31.352 (2)
C9—N21.482 (2)C21—C221.363 (2)
C9—C101.517 (3)C22—N51.342 (2)
C9—H90.9800C22—H220.9300
C10—C111.496 (3)C23—N51.453 (2)
C10—H10A0.9700C23—C241.517 (2)
C10—H10B0.9700C23—H23A0.9700
C11—C121.527 (3)C23—H23B0.9700
C11—H11A0.9700C24—N11.451 (2)
C11—H11B0.9700C24—H24A0.9700
C12—N21.469 (2)C24—H24B0.9700
C12—H12A0.9700N3—N41.310 (3)
C12—H12B0.9700N4—N51.341 (2)
C13—N21.485 (2)
O1—C1—N1125.74 (15)C8—C13—H13108.2
O1—C1—C8126.13 (15)C15—C14—C19117.42 (15)
N1—C1—C8108.13 (13)C15—C14—C13120.41 (15)
C3—C2—C7122.67 (16)C19—C14—C13122.16 (15)
C3—C2—N1127.32 (16)C16—C15—C14122.07 (17)
C7—C2—N1109.94 (14)C16—C15—H15119.0
C2—C3—C4117.28 (18)C14—C15—H15119.0
C2—C3—H3121.4C17—C16—C15119.49 (18)
C4—C3—H3121.4C17—C16—H16120.3
C5—C4—C3121.42 (19)C15—C16—H16120.3
C5—C4—H4119.3C16—C17—C18120.24 (17)
C3—C4—H4119.3C16—C17—H17119.9
C4—C5—C6120.62 (18)C18—C17—H17119.9
C4—C5—H5119.7C17—C18—C19120.12 (17)
C6—C5—H5119.7C17—C18—H18119.9
C7—C6—C5118.95 (18)C19—C18—H18119.9
C7—C6—H6120.5O3—C19—C18121.30 (16)
C5—C6—H6120.5O3—C19—C14118.09 (15)
C2—C7—C6119.03 (16)C18—C19—C14120.55 (16)
C2—C7—C8108.75 (14)O3—C20—C21111.30 (14)
C6—C7—C8132.13 (16)O3—C20—H20A109.4
O2—C8—C7113.99 (13)C21—C20—H20A109.4
O2—C8—C13100.54 (12)O3—C20—H20B109.4
C7—C8—C13118.59 (13)C21—C20—H20B109.4
O2—C8—C1106.84 (12)H20A—C20—H20B108.0
C7—C8—C1102.27 (13)N3—C21—C22108.41 (17)
C13—C8—C1114.51 (13)N3—C21—C20121.57 (17)
O2—C9—N2105.97 (13)C22—C21—C20129.78 (17)
O2—C9—C10111.89 (16)N5—C22—C21104.75 (15)
N2—C9—C10107.38 (15)N5—C22—H22127.6
O2—C9—H9110.5C21—C22—H22127.6
N2—C9—H9110.5N5—C23—C24109.67 (14)
C10—C9—H9110.5N5—C23—H23A109.7
C11—C10—C9104.64 (16)C24—C23—H23A109.7
C11—C10—H10A110.8N5—C23—H23B109.7
C9—C10—H10A110.8C24—C23—H23B109.7
C11—C10—H10B110.8H23A—C23—H23B108.2
C9—C10—H10B110.8N1—C24—C23112.96 (13)
H10A—C10—H10B108.9N1—C24—H24A109.0
C10—C11—C12102.31 (18)C23—C24—H24A109.0
C10—C11—H11A111.3N1—C24—H24B109.0
C12—C11—H11A111.3C23—C24—H24B109.0
C10—C11—H11B111.3H24A—C24—H24B107.8
C12—C11—H11B111.3C1—N1—C2110.80 (13)
H11A—C11—H11B109.2C1—N1—C24123.51 (14)
N2—C12—C11105.04 (16)C2—N1—C24125.49 (14)
N2—C12—H12A110.7C12—N2—C9106.36 (14)
C11—C12—H12A110.7C12—N2—C13112.30 (14)
N2—C12—H12B110.7C9—N2—C13105.71 (12)
C11—C12—H12B110.7N4—N3—C21108.94 (16)
H12A—C12—H12B108.8N3—N4—N5107.09 (15)
N2—C13—C14112.38 (13)N4—N5—C22110.80 (15)
N2—C13—C8100.14 (12)N4—N5—C23120.06 (15)
C14—C13—C8119.02 (14)C22—N5—C23126.58 (15)
N2—C13—H13108.2C9—O2—C8106.93 (12)
C14—C13—H13108.2C19—O3—C20116.75 (14)
C7—C2—C3—C4−0.3 (2)C13—C14—C19—O34.1 (2)
N1—C2—C3—C4−177.07 (16)C15—C14—C19—C182.3 (2)
C2—C3—C4—C50.4 (3)C13—C14—C19—C18−178.74 (16)
C3—C4—C5—C60.6 (3)O3—C20—C21—N3126.6 (2)
C4—C5—C6—C7−1.7 (3)O3—C20—C21—C22−47.2 (3)
C3—C2—C7—C6−0.7 (2)N3—C21—C22—N5−0.5 (2)
N1—C2—C7—C6176.53 (15)C20—C21—C22—N5173.87 (18)
C3—C2—C7—C8−177.75 (15)N5—C23—C24—N1−62.19 (19)
N1—C2—C7—C8−0.49 (17)O1—C1—N1—C2−176.26 (15)
C5—C6—C7—C21.7 (3)C8—C1—N1—C23.07 (17)
C5—C6—C7—C8177.89 (17)O1—C1—N1—C24−1.2 (3)
C2—C7—C8—O2117.07 (14)C8—C1—N1—C24178.13 (13)
C6—C7—C8—O2−59.4 (2)C3—C2—N1—C1175.41 (16)
C2—C7—C8—C13−124.86 (15)C7—C2—N1—C1−1.69 (18)
C6—C7—C8—C1358.7 (2)C3—C2—N1—C240.5 (3)
C2—C7—C8—C12.16 (16)C7—C2—N1—C24−176.63 (14)
C6—C7—C8—C1−174.33 (17)C23—C24—N1—C199.69 (18)
O1—C1—C8—O256.1 (2)C23—C24—N1—C2−85.98 (19)
N1—C1—C8—O2−123.19 (14)C11—C12—N2—C9−27.44 (19)
O1—C1—C8—C7176.18 (16)C11—C12—N2—C1387.73 (18)
N1—C1—C8—C7−3.15 (16)O2—C9—N2—C12126.13 (15)
O1—C1—C8—C13−54.2 (2)C10—C9—N2—C126.41 (19)
N1—C1—C8—C13126.45 (14)O2—C9—N2—C136.58 (18)
O2—C9—C10—C11−98.40 (19)C10—C9—N2—C13−113.15 (16)
N2—C9—C10—C1117.5 (2)C14—C13—N2—C1286.45 (18)
C9—C10—C11—C12−33.3 (2)C8—C13—N2—C12−146.21 (14)
C10—C11—C12—N238.0 (2)C14—C13—N2—C9−157.99 (14)
O2—C8—C13—N243.82 (14)C8—C13—N2—C9−30.64 (16)
C7—C8—C13—N2−81.10 (16)C22—C21—N3—N40.8 (2)
C1—C8—C13—N2157.94 (13)C20—C21—N3—N4−174.12 (19)
O2—C8—C13—C14166.61 (14)C21—N3—N4—N5−0.8 (3)
C7—C8—C13—C1441.7 (2)N3—N4—N5—C220.5 (2)
C1—C8—C13—C14−79.27 (18)N3—N4—N5—C23163.50 (17)
N2—C13—C14—C1545.4 (2)C21—C22—N5—N40.0 (2)
C8—C13—C14—C15−71.2 (2)C21—C22—N5—C23−161.64 (16)
N2—C13—C14—C19−133.54 (16)C24—C23—N5—N4−76.5 (2)
C8—C13—C14—C19109.96 (18)C24—C23—N5—C2283.6 (2)
C19—C14—C15—C16−3.4 (3)N2—C9—O2—C822.94 (18)
C13—C14—C15—C16177.61 (16)C10—C9—O2—C8139.67 (15)
C14—C15—C16—C171.6 (3)C7—C8—O2—C986.14 (16)
C15—C16—C17—C181.5 (3)C13—C8—O2—C9−41.85 (16)
C16—C17—C18—C19−2.5 (3)C1—C8—O2—C9−161.66 (13)
C17—C18—C19—O3177.63 (18)C18—C19—O3—C2044.2 (2)
C17—C18—C19—C140.6 (3)C14—C19—O3—C20−138.69 (16)
C15—C14—C19—O3−174.82 (14)C21—C20—O3—C1969.3 (2)
D—H···AD—HH···AD···AD—H···A
C3—H3···O1i0.932.453.311 (3)154
C23—H23B···O2i0.972.533.372 (3)145
C24—H24B···O1i0.972.313.209 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O1i 0.932.453.311 (3)154
C23—H23B⋯O2i 0.972.533.372 (3)145
C24—H24B⋯O1i 0.972.313.209 (3)153

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Eduarda Fernandes; David Costa; Sofia A Toste; José L F C Lima; Salette Reis
Journal:  Free Radic Biol Med       Date:  2004-12-01       Impact factor: 7.376

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-05

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