Literature DB >> 24454062

1-(5,5-Di-meth-oxy-pent-yl)-3-methyl-imidazolium-2-carboxyl-ate.

Olaf Walter1.   

Abstract

The title compound, C12H20N2O4, represents one example of a zwitterionic imidazolium salt with a carboxyl-ate group at the 2-position of the imidazolium ring. The dihedral angle between the heterocyclic ring and the carboxyl-ate group is 31.3 (1)°. The side chain linking the N atom of the ring and the methine C atom has a gauche-anti-anti conformation [torsion angles = -60.3 (2), -175.7 (2) and 178.7 (2)°, respectively]. In the crystal, mol-ecules are linked by short C-H⋯O hydrogen bonds involving the C-H groups in the aromatic ring to generate (001) sheets.

Entities:  

Year:  2013        PMID: 24454062      PMCID: PMC3884286          DOI: 10.1107/S1600536813027013

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related zwitterionic structures, see: Gurau et al. (2011 ▶); Holbrey et al. (2003 ▶); Smiglak et al. (2007 ▶); Reichert et al. (2010 ▶).

Experimental

Crystal data

C12H20N2O4 M = 256.30 Triclinic, a = 7.1943 (8) Å b = 7.3259 (8) Å c = 13.2263 (15) Å α = 85.124 (2)° β = 85.542 (2)° γ = 72.938 (2)° V = 662.98 (13) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 200 K 0.3 × 0.15 × 0.15 mm

Data collection

Siemens SMART CCD 1000 diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.940, T max = 1.000 8022 measured reflections 3192 independent reflections 1962 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.178 S = 1.03 3192 reflections 171 parameters Only H-atom displacement parameters refined Δρmax = 0.27 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SMART; data reduction: SAINT (Bruker, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2013 ▶); molecular graphics: XPMA (Zsolnai, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813027013/hb7143sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813027013/hb7143Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813027013/hb7143Isup3.mol Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813027013/hb7143Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H20N2O4Z = 2
Mr = 256.30F(000) = 276
Triclinic, P1Dx = 1.284 Mg m3
a = 7.1943 (8) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.3259 (8) ÅCell parameters from 49 reflections
c = 13.2263 (15) Åθ = 2.8–42.3°
α = 85.124 (2)°µ = 0.10 mm1
β = 85.542 (2)°T = 200 K
γ = 72.938 (2)°Block, colourless
V = 662.98 (13) Å30.3 × 0.15 × 0.15 mm
Siemens SMART CCD 1000 diffractometer3192 independent reflections
Radiation source: fine-focus sealed tube1962 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 8 pixels mm-1θmax = 28.3°, θmin = 1.6°
ω scanh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 1997)k = −9→9
Tmin = 0.940, Tmax = 1l = −17→17
8022 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.178Only H-atom displacement parameters refined
S = 1.03w = 1/[σ2(Fo2) + (0.1021P)2] where P = (Fo2 + 2Fc2)/3
3192 reflections(Δ/σ)max < 0.001
171 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.32 e Å3
Experimental. Spectroscopic data: 1H NMR (CDCl3): δ = 6.93, s (br), 1H, CH(arom); 6.91 (br), s, 1H, CH(arom); 4.51, t, 3JHH= 7.4 Hz, 2H, NCH2; 4.26, t, 3JHH= 5.5 Hz, 1H, COH; 4.06, s (br), 3H, NCH3; 3.24, s, 6H, OCH3; 1.84, p, 3JHH= 7.4 Hz, 2H, CH2; 1.56, m, 2H, CH2; 1.35, m, CH2.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. The structure was solved by direct methods and refined to an optimum R1 value with SHELXL. The data of the structure have been deposited at the CCDC with the reference number 962824.
xyzUiso*/Ueq
O10.1515 (2)−0.2046 (2)0.42195 (13)0.0450 (4)
O20.3946 (2)−0.4369 (2)0.35645 (13)0.0472 (4)
O30.2709 (3)0.4306 (3)−0.04153 (13)0.0594 (5)
O40.2379 (3)0.1828 (3)−0.13125 (14)0.0745 (6)
N10.3940 (2)0.0490 (2)0.36421 (11)0.0254 (4)
N20.6433 (2)−0.1977 (2)0.38760 (11)0.0252 (4)
C10.4498 (3)−0.1435 (2)0.37745 (13)0.0239 (4)
C20.3182 (3)−0.2742 (3)0.38566 (15)0.0298 (5)
C30.5536 (3)0.1147 (3)0.36567 (15)0.0297 (5)
H30.55450.24180.35720.030 (4)*
C40.7090 (3)−0.0391 (3)0.38158 (14)0.0303 (5)
H40.8366−0.03770.38740.030 (4)*
C50.7684 (3)−0.3936 (3)0.40763 (17)0.0357 (5)
H5A0.7251−0.44680.47070.050 (4)*
H5B0.9005−0.39160.41170.050 (4)*
H5C0.7616−0.47040.35350.050 (4)*
C60.1956 (3)0.1756 (3)0.34690 (15)0.0304 (5)
H6A0.19400.30760.35100.040 (2)*
H6B0.10560.14650.39990.040 (2)*
C70.1284 (3)0.1521 (3)0.24391 (16)0.0374 (5)
H7A0.12520.02100.24160.040 (2)*
H7B−0.00360.23450.23740.040 (2)*
C80.2543 (3)0.1980 (3)0.15374 (17)0.0438 (6)
H8A0.26560.32580.15800.040 (2)*
H8B0.38380.10890.15660.040 (2)*
C90.1725 (4)0.1868 (4)0.05333 (18)0.0491 (6)
H9A0.04140.27340.05180.040 (2)*
H9B0.16350.05810.04910.040 (2)*
C100.2915 (4)0.2362 (4)−0.03937 (18)0.0577 (7)
H100.42880.1672−0.03030.042 (6)*
C110.4004 (5)0.4901 (6)−0.1162 (2)0.0980 (13)
H11A0.53220.4170−0.10430.122 (6)*
H11B0.38650.6235−0.11150.122 (6)*
H11C0.36920.4695−0.18280.122 (6)*
C120.0419 (5)0.2754 (5)−0.1545 (2)0.0674 (8)
H12A−0.04350.2222−0.11000.122 (6)*
H12B0.02420.2570−0.22370.122 (6)*
H12C0.01250.4098−0.14550.122 (6)*
U11U22U33U12U13U23
O10.0251 (8)0.0351 (9)0.0739 (12)−0.0105 (6)0.0030 (7)0.0031 (7)
O20.0530 (10)0.0268 (8)0.0648 (11)−0.0175 (7)0.0080 (8)−0.0088 (7)
O30.0608 (12)0.0811 (14)0.0435 (10)−0.0348 (10)−0.0001 (8)0.0047 (9)
O40.0951 (16)0.0718 (14)0.0456 (11)−0.0059 (12)−0.0002 (11)−0.0108 (9)
N10.0264 (8)0.0199 (8)0.0290 (8)−0.0056 (6)−0.0007 (6)−0.0009 (6)
N20.0236 (8)0.0233 (8)0.0276 (8)−0.0058 (6)−0.0001 (6)0.0000 (6)
C10.0248 (9)0.0210 (9)0.0248 (9)−0.0053 (7)−0.0010 (7)−0.0006 (7)
C20.0325 (11)0.0247 (10)0.0336 (11)−0.0114 (8)−0.0063 (8)0.0051 (8)
C30.0342 (11)0.0243 (10)0.0341 (11)−0.0140 (8)−0.0013 (8)−0.0026 (8)
C40.0285 (10)0.0331 (11)0.0327 (11)−0.0147 (9)−0.0006 (8)−0.0019 (8)
C50.0301 (11)0.0263 (11)0.0453 (13)−0.0012 (8)−0.0043 (9)0.0042 (9)
C60.0272 (10)0.0211 (9)0.0390 (11)−0.0015 (8)−0.0019 (8)0.0004 (8)
C70.0345 (11)0.0314 (11)0.0447 (13)−0.0078 (9)−0.0075 (9)0.0046 (9)
C80.0398 (13)0.0454 (13)0.0421 (13)−0.0077 (10)−0.0037 (10)0.0043 (10)
C90.0574 (15)0.0446 (14)0.0436 (14)−0.0128 (12)−0.0061 (11)0.0032 (10)
C100.0615 (17)0.0628 (18)0.0388 (14)−0.0021 (14)−0.0043 (12)−0.0029 (12)
C110.079 (2)0.180 (4)0.0543 (19)−0.076 (3)−0.0008 (16)0.022 (2)
C120.082 (2)0.082 (2)0.0481 (16)−0.0391 (18)−0.0070 (15)−0.0028 (14)
O1—C21.234 (2)C6—C71.520 (3)
O2—C21.238 (2)C6—H6A0.9700
O3—C101.386 (3)C6—H6B0.9700
O3—C111.433 (3)C7—C81.516 (3)
O4—C121.419 (3)C7—H7A0.9700
O4—C101.421 (3)C7—H7B0.9700
N1—C11.348 (2)C8—C91.512 (3)
N1—C31.371 (2)C8—H8A0.9700
N1—C61.479 (2)C8—H8B0.9700
N2—C11.345 (2)C9—C101.520 (3)
N2—C41.372 (2)C9—H9A0.9700
N2—C51.468 (2)C9—H9B0.9700
C1—C21.524 (3)C10—H100.9800
C3—C41.349 (3)C11—H11A0.9600
C3—H30.9300C11—H11B0.9600
C4—H40.9300C11—H11C0.9600
C5—H5A0.9600C12—H12A0.9600
C5—H5B0.9600C12—H12B0.9600
C5—H5C0.9600C12—H12C0.9600
C10—O3—C11112.8 (2)C6—C7—H7A108.6
C12—O4—C10114.0 (2)C8—C7—H7B108.6
C1—N1—C3109.36 (15)C6—C7—H7B108.6
C1—N1—C6127.21 (16)H7A—C7—H7B107.6
C3—N1—C6123.40 (15)C9—C8—C7112.45 (19)
C1—N2—C4109.59 (15)C9—C8—H8A109.1
C1—N2—C5126.70 (15)C7—C8—H8A109.1
C4—N2—C5123.63 (15)C9—C8—H8B109.1
N2—C1—N1106.65 (15)C7—C8—H8B109.1
N2—C1—C2126.40 (16)H8A—C8—H8B107.8
N1—C1—C2126.86 (16)C8—C9—C10114.3 (2)
O1—C2—O2128.94 (19)C8—C9—H9A108.7
O1—C2—C1115.65 (17)C10—C9—H9A108.7
O2—C2—C1115.39 (17)C8—C9—H9B108.7
C4—C3—N1107.34 (16)C10—C9—H9B108.7
C4—C3—H3126.3H9A—C9—H9B107.6
N1—C3—H3126.3O3—C10—O4112.1 (2)
C3—C4—N2107.05 (16)O3—C10—C9107.4 (2)
C3—C4—H4126.5O4—C10—C9112.8 (2)
N2—C4—H4126.5O3—C10—H10108.1
N2—C5—H5A109.5O4—C10—H10108.1
N2—C5—H5B109.5C9—C10—H10108.1
H5A—C5—H5B109.5O3—C11—H11A109.5
N2—C5—H5C109.5O3—C11—H11B109.5
H5A—C5—H5C109.5H11A—C11—H11B109.5
H5B—C5—H5C109.5O3—C11—H11C109.5
N1—C6—C7111.91 (15)H11A—C11—H11C109.5
N1—C6—H6A109.2H11B—C11—H11C109.5
C7—C6—H6A109.2O4—C12—H12A109.5
N1—C6—H6B109.2O4—C12—H12B109.5
C7—C6—H6B109.2H12A—C12—H12B109.5
H6A—C6—H6B107.9O4—C12—H12C109.5
C8—C7—C6114.69 (18)H12A—C12—H12C109.5
C8—C7—H7A108.6H12B—C12—H12C109.5
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.932.303.141 (2)151
C4—H4···O1ii0.932.303.127 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O2i 0.932.303.141 (2)151
C4—H4⋯O1ii 0.932.303.127 (2)148

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Demonstration of chemisorption of carbon dioxide in 1,3-dialkylimidazolium acetate ionic liquids.

Authors:  Gabriela Gurau; Héctor Rodríguez; Steven P Kelley; Peter Janiczek; Roland S Kalb; Robin D Rogers
Journal:  Angew Chem Int Ed Engl       Date:  2011-10-13       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1,3-dimethylimidazolium-2-carboxylate: the unexpected synthesis of an ionic liquid precursor and carbene-CO2 adduct.

Authors:  John D Holbrey; W Matthew Reichert; Igor Tkatchenko; Ezzedine Bouajila; Olaf Walter; Immacolata Tommasi; Robin D Rogers
Journal:  Chem Commun (Camb)       Date:  2003-01-07       Impact factor: 6.222

4.  3-(1-Methyl-3-imidazolio)propane-sulfonate: a precursor to a Brønsted acid ionic liquid.

Authors:  W Matthew Reichert; Paul C Trulove; Hugh C De Long
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13
  4 in total

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