Literature DB >> 24454055

N-(4-Fluoro-phen-yl)-2,6-dimethyl-1,3-dioxan-4-amine.

Gottimukkala Rambabu1, Zeenat Fatima2, Bandapalli Palakshi Reddy1, Vijayaparthasarathi Vijayakumar3, Devadasan Velmurugan2.   

Abstract

In the title compound, C12H16FNO2, the dioxane ring adopts a chair conformation with the methyl substituents and the C-N bond in equatorial orientations. Its mean plane subtends a dihedral angle of 40.17 (6)° with the benzene ring. In the crystal, weak N-H⋯F hydrogen bonds link the mol-ecules into C(7) chains propagating in [100].

Entities:  

Year:  2013        PMID: 24454055      PMCID: PMC3884279          DOI: 10.1107/S1600536813026561

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to dioxanes, see: Fatima et al. (2013 ▶).

Experimental

Crystal data

C12H16FNO2 M = 225.26 Monoclinic, a = 10.4924 (10) Å b = 10.0614 (10) Å c = 11.0379 (11) Å β = 90.136 (2)° V = 1165.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.649, T max = 0.746 10977 measured reflections 2910 independent reflections 2179 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.129 S = 1.01 2910 reflections 147 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813026561/hb7138sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026561/hb7138Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813026561/hb7138Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16FNO2F(000) = 480
Mr = 225.26Dx = 1.284 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2910 reflections
a = 10.4924 (10) Åθ = 2.7–28.4°
b = 10.0614 (10) ŵ = 0.10 mm1
c = 11.0379 (11) ÅT = 293 K
β = 90.136 (2)°Block, colourless
V = 1165.2 (2) Å30.25 × 0.20 × 0.15 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer2910 independent reflections
Radiation source: fine-focus sealed tube2179 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
ω and φ scansθmax = 28.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −13→13
Tmin = 0.649, Tmax = 0.746k = −13→13
10977 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0644P)2 + 0.1851P] where P = (Fo2 + 2Fc2)/3
2910 reflections(Δ/σ)max < 0.001
147 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.85420 (8)0.16432 (8)0.95248 (8)0.0469 (2)
O20.91002 (9)0.28191 (9)0.77911 (8)0.0509 (2)
C30.91619 (12)0.04131 (13)0.77606 (11)0.0491 (3)
H3A0.8970−0.03560.72630.059*
H3B1.00450.03510.80180.059*
C50.82700 (12)0.27629 (12)0.87937 (12)0.0482 (3)
H50.73860.27180.85090.058*
N10.84979 (10)−0.06797 (11)0.96310 (10)0.0525 (3)
H10.9177−0.11480.95460.063*
C40.83024 (11)0.04228 (11)0.88605 (11)0.0453 (3)
H40.74130.04210.85870.054*
C20.89697 (13)0.16759 (13)0.70224 (12)0.0514 (3)
H20.81110.16690.66720.062*
F10.49573 (9)−0.21970 (11)1.30521 (8)0.0788 (3)
C70.76261 (11)−0.10329 (11)1.05237 (11)0.0442 (3)
C80.77421 (13)−0.22492 (13)1.11186 (14)0.0556 (3)
H80.8424−0.28061.09390.067*
C90.68551 (15)−0.26374 (15)1.19728 (14)0.0622 (4)
H90.6935−0.34501.23670.075*
C120.66199 (11)−0.02028 (12)1.08440 (12)0.0497 (3)
H120.65460.06281.04810.060*
C110.57272 (13)−0.05951 (14)1.16951 (12)0.0539 (3)
H110.5051−0.00411.18980.065*
C60.84563 (15)0.39947 (14)0.95358 (14)0.0630 (4)
H6A0.93180.40260.98300.095*
H6B0.78790.39851.02090.095*
H6C0.82920.47630.90440.095*
C100.58580 (13)−0.18076 (15)1.22298 (12)0.0553 (3)
C10.99285 (17)0.18267 (17)0.60184 (14)0.0693 (4)
H1A0.97650.26370.55850.104*
H1B0.98600.10860.54740.104*
H1C1.07720.18540.63570.104*
U11U22U33U12U13U23
O10.0494 (5)0.0386 (4)0.0529 (5)−0.0015 (3)−0.0005 (4)0.0021 (3)
O20.0567 (5)0.0407 (5)0.0551 (5)−0.0081 (4)−0.0008 (4)0.0033 (4)
C30.0510 (7)0.0415 (6)0.0550 (7)−0.0041 (5)0.0010 (5)−0.0027 (5)
C50.0448 (6)0.0382 (6)0.0615 (7)0.0007 (5)−0.0030 (5)0.0043 (5)
N10.0438 (5)0.0426 (5)0.0712 (7)0.0076 (4)0.0087 (5)0.0123 (5)
C40.0402 (6)0.0372 (6)0.0584 (7)−0.0023 (4)−0.0015 (5)0.0035 (5)
C20.0558 (7)0.0469 (7)0.0514 (7)−0.0082 (5)−0.0057 (6)0.0004 (5)
F10.0799 (6)0.0875 (7)0.0691 (6)−0.0231 (5)0.0156 (5)0.0142 (5)
C70.0412 (6)0.0360 (6)0.0555 (7)−0.0029 (4)−0.0031 (5)0.0024 (5)
C80.0480 (7)0.0442 (7)0.0747 (9)0.0025 (5)−0.0051 (6)0.0114 (6)
C90.0643 (8)0.0516 (7)0.0705 (9)−0.0076 (6)−0.0097 (7)0.0214 (7)
C120.0499 (6)0.0372 (6)0.0621 (7)0.0001 (5)0.0030 (5)0.0039 (5)
C110.0503 (7)0.0510 (7)0.0603 (8)−0.0029 (5)0.0048 (6)−0.0042 (6)
C60.0729 (9)0.0416 (7)0.0746 (9)−0.0004 (6)0.0029 (7)−0.0027 (6)
C100.0554 (7)0.0602 (8)0.0502 (7)−0.0158 (6)0.0003 (6)0.0050 (6)
C10.0872 (11)0.0654 (9)0.0554 (8)−0.0120 (8)0.0075 (8)0.0026 (7)
O1—C51.4145 (14)C7—C81.3940 (17)
O1—C41.4517 (14)C7—C121.3924 (17)
O2—C51.4111 (16)C8—C91.383 (2)
O2—C21.4357 (15)C8—H80.9300
C3—C41.5141 (17)C9—C101.369 (2)
C3—C21.5226 (18)C9—H90.9300
C3—H3A0.9700C12—C111.3856 (17)
C3—H3B0.9700C12—H120.9300
C5—C61.4981 (19)C11—C101.362 (2)
C5—H50.9800C11—H110.9300
N1—C71.3922 (15)C6—H6A0.9600
N1—C41.4125 (15)C6—H6B0.9600
N1—H10.8600C6—H6C0.9600
C4—H40.9800C1—H1A0.9600
C2—C11.5061 (19)C1—H1B0.9600
C2—H20.9800C1—H1C0.9600
F1—C101.3691 (15)
C5—O1—C4110.55 (9)C8—C7—C12118.19 (12)
C5—O2—C2111.92 (9)N1—C7—C12121.77 (11)
C4—C3—C2110.20 (10)C9—C8—C7120.73 (13)
C4—C3—H3A109.6C9—C8—H8119.6
C2—C3—H3A109.6C7—C8—H8119.6
C4—C3—H3B109.6C10—C9—C8119.02 (13)
C2—C3—H3B109.6C10—C9—H9120.5
H3A—C3—H3B108.1C8—C9—H9120.5
O2—C5—O1110.80 (9)C11—C12—C7121.03 (12)
O2—C5—C6108.40 (10)C11—C12—H12119.5
O1—C5—C6108.73 (11)C7—C12—H12119.5
O2—C5—H5109.6C10—C11—C12118.78 (13)
O1—C5—H5109.6C10—C11—H11120.6
C6—C5—H5109.6C12—C11—H11120.6
C7—N1—C4122.13 (10)C5—C6—H6A109.5
C7—N1—H1118.9C5—C6—H6B109.5
C4—N1—H1118.9H6A—C6—H6B109.5
N1—C4—O1109.60 (10)C5—C6—H6C109.5
N1—C4—C3113.06 (10)H6A—C6—H6C109.5
O1—C4—C3107.92 (9)H6B—C6—H6C109.5
N1—C4—H4108.7C11—C10—C9122.19 (12)
O1—C4—H4108.7C11—C10—F1118.33 (13)
C3—C4—H4108.7C9—C10—F1119.47 (13)
O2—C2—C1106.93 (10)C2—C1—H1A109.5
O2—C2—C3109.87 (10)C2—C1—H1B109.5
C1—C2—C3112.96 (12)H1A—C1—H1B109.5
O2—C2—H2109.0C2—C1—H1C109.5
C1—C2—H2109.0H1A—C1—H1C109.5
C3—C2—H2109.0H1B—C1—H1C109.5
C8—C7—N1120.04 (11)
C2—O2—C5—O161.43 (13)C4—C3—C2—C1171.55 (11)
C2—O2—C5—C6−179.33 (10)C4—N1—C7—C8168.84 (12)
C4—O1—C5—O2−64.23 (12)C4—N1—C7—C12−10.76 (19)
C4—O1—C5—C6176.73 (10)N1—C7—C8—C9−177.40 (13)
C7—N1—C4—O174.98 (14)C12—C7—C8—C92.2 (2)
C7—N1—C4—C3−164.58 (11)C7—C8—C9—C10−0.1 (2)
C5—O1—C4—N1−176.11 (9)C8—C7—C12—C11−2.58 (19)
C5—O1—C4—C360.37 (12)N1—C7—C12—C11177.03 (12)
C2—C3—C4—N1−175.84 (10)C7—C12—C11—C100.8 (2)
C2—C3—C4—O1−54.45 (12)C12—C11—C10—C91.4 (2)
C5—O2—C2—C1−178.06 (10)C12—C11—C10—F1−178.74 (12)
C5—O2—C2—C3−55.13 (13)C8—C9—C10—C11−1.7 (2)
C4—C3—C2—O252.25 (14)C8—C9—C10—F1178.39 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1···F1i0.862.483.1556 (14)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯F1i 0.862.483.1556 (14)136

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

3.  N-(2-Fluoro-phen-yl)-2,6-dimethyl-1,3-dioxan-4-amine.

Authors:  Zeenat Fatima; Gottimukkala Rambabu; Bandapalli Palakshi Reddy; Vijayaparthasarathi Vijayakumar; Devadasan Velmurugan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-12
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.