Literature DB >> 24454052

3-Isopropyl-1-{2-[(1-methyl-1H-tetra-zol-5-yl)sulfan-yl]acet-yl}-2,6-di-phenyl-piperidin-4-one hemihydrate.

S Ganesan1, P Sugumar2, S Ananthan3, M N Ponnuswamy2.   

Abstract

In the title compound, C24H27N5O2S·0.5H2O, the piperidine ring adopts a distorted boat conformation. The phenyl rings subtend dihedral angles of 69.7 (1) and 88.7 (1)° with the best plane through the piperidine moiety. In the crystal, symmetry-related mol-ecules are linked through a network of C-H⋯O and C-H⋯N inter-actions, the former connecting them into zigzag chains along the c-axis direction and the latter forming an R (2) 2(4)motif. The dimer formation (C-H⋯N) and the repetition of symmetry-related molecules (C-H⋯O) along the b-axis direction stabilize the packing mode. The water mol-ecule is located on a twofold rotation axis.

Entities:  

Year:  2013        PMID: 24454052      PMCID: PMC3884276          DOI: 10.1107/S1600536813026500

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperidine derivatives, see: Aridoss et al. (2009 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For asymmetry parameters, see: Nardelli (1983 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C24H27N5O2S·0.5H2O M = 458.57 Monoclinic, a = 28.7522 (9) Å b = 11.1809 (4) Å c = 16.5584 (5) Å β = 115.303 (2)° V = 4812.4 (3) Å3 Z = 8 Mo Kα radiation μ = 0.17 mm−1 T = 293 K 0.22 × 0.19 × 0.17 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.964, T max = 0.972 22058 measured reflections 6013 independent reflections 4157 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.146 S = 1.04 6013 reflections 297 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813026500/bt6930sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026500/bt6930Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813026500/bt6930Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H27N5O2S·0.5H2OF(000) = 1944
Mr = 458.57Dx = 1.266 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4157 reflections
a = 28.7522 (9) Åθ = 2.5–28.5°
b = 11.1809 (4) ŵ = 0.17 mm1
c = 16.5584 (5) ÅT = 293 K
β = 115.303 (2)°Block, white crystalline
V = 4812.4 (3) Å30.22 × 0.19 × 0.17 mm
Z = 8
Bruker SMART APEXII CCD diffractometer6013 independent reflections
Radiation source: fine-focus sealed tube4157 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
ω and φ scansθmax = 28.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −38→37
Tmin = 0.964, Tmax = 0.972k = −14→14
22058 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0657P)2 + 3.1292P] where P = (Fo2 + 2Fc2)/3
6013 reflections(Δ/σ)max < 0.001
297 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.36794 (6)0.31060 (16)0.37251 (12)0.0412 (4)
H20.36030.24570.32890.049*
C30.40052 (7)0.40262 (18)0.35071 (12)0.0492 (4)
H30.43390.36590.36350.059*
C40.41000 (7)0.51029 (18)0.41040 (13)0.0519 (5)
C50.37256 (7)0.52979 (16)0.45051 (12)0.0465 (4)
H5A0.37150.61470.46170.056*
H5B0.38560.48940.50780.056*
C60.31739 (6)0.48676 (14)0.39456 (11)0.0388 (4)
H60.30120.54170.34410.047*
C70.28781 (6)0.49375 (15)0.45121 (11)0.0402 (4)
C80.25431 (7)0.58770 (17)0.43993 (14)0.0519 (5)
H80.24850.64370.39510.062*
C90.22951 (9)0.5988 (2)0.49479 (18)0.0661 (6)
H90.20710.66250.48680.079*
C100.23757 (9)0.5170 (2)0.56082 (17)0.0682 (6)
H100.22110.52530.59810.082*
C110.27031 (9)0.4222 (2)0.57168 (15)0.0638 (6)
H110.27550.36570.61590.077*
C120.29535 (8)0.41052 (17)0.51762 (13)0.0508 (4)
H120.31750.34640.52570.061*
C130.39463 (6)0.25381 (16)0.46536 (12)0.0439 (4)
C140.36763 (7)0.16991 (17)0.48954 (14)0.0525 (5)
H140.33450.14890.44900.063*
C150.38885 (9)0.1164 (2)0.57293 (15)0.0640 (6)
H150.36980.06110.58830.077*
C160.43792 (9)0.1451 (2)0.63289 (16)0.0708 (6)
H160.45220.10970.68910.085*
C170.46572 (8)0.2261 (2)0.60943 (16)0.0712 (7)
H170.49910.24500.64980.085*
C180.44445 (7)0.28039 (19)0.52588 (14)0.0570 (5)
H180.46380.33490.51060.068*
C190.37600 (8)0.4421 (2)0.25143 (14)0.0598 (5)
H190.34410.48490.24020.072*
C200.36228 (12)0.3358 (3)0.18807 (16)0.0836 (8)
H20A0.34810.36390.12750.125*
H20B0.33740.28670.19680.125*
H20C0.39270.28960.20000.125*
C210.41134 (12)0.5283 (3)0.2321 (2)0.1060 (11)
H21A0.44320.48880.24340.159*
H21B0.41810.59710.27010.159*
H21C0.39500.55300.17070.159*
C220.27371 (6)0.31101 (15)0.30215 (11)0.0386 (4)
C230.22425 (6)0.37998 (17)0.27937 (12)0.0456 (4)
H23A0.22830.46200.26430.055*
H23B0.21590.38080.33030.055*
C240.12585 (7)0.41117 (17)0.17409 (13)0.0499 (4)
C250.06530 (10)0.3638 (2)0.01369 (17)0.0818 (8)
H25A0.09210.3667−0.00620.123*
H25B0.03520.4030−0.02920.123*
H25C0.05730.28190.01990.123*
N10.31787 (5)0.36569 (12)0.35824 (9)0.0368 (3)
N20.12550 (7)0.48754 (19)0.23410 (14)0.0695 (5)
N30.08016 (8)0.5478 (2)0.19371 (18)0.0833 (6)
N40.05421 (7)0.51015 (18)0.11397 (18)0.0799 (6)
N50.08241 (6)0.42381 (15)0.09937 (12)0.0600 (5)
O10.44618 (6)0.57684 (16)0.42809 (13)0.0792 (5)
O20.27217 (5)0.21064 (12)0.27106 (9)0.0508 (3)
S10.173492 (17)0.30767 (4)0.18556 (3)0.04999 (15)
O1W0.00000.7061 (7)0.25000.373 (7)
H1W0.01720.66920.22980.560*
U11U22U33U12U13U23
C20.0302 (8)0.0449 (9)0.0444 (9)−0.0009 (7)0.0121 (7)−0.0003 (7)
C30.0349 (9)0.0609 (12)0.0488 (10)−0.0035 (8)0.0152 (8)0.0055 (8)
C40.0369 (9)0.0564 (11)0.0538 (11)−0.0119 (8)0.0110 (8)0.0054 (8)
C50.0403 (9)0.0427 (9)0.0481 (9)−0.0116 (7)0.0109 (8)−0.0033 (7)
C60.0345 (8)0.0355 (8)0.0397 (8)−0.0034 (6)0.0093 (7)0.0020 (6)
C70.0379 (8)0.0378 (9)0.0405 (8)−0.0080 (7)0.0125 (7)−0.0056 (6)
C80.0477 (10)0.0447 (10)0.0582 (11)−0.0021 (8)0.0178 (9)−0.0059 (8)
C90.0559 (12)0.0567 (13)0.0906 (16)−0.0078 (10)0.0360 (12)−0.0249 (12)
C100.0721 (14)0.0690 (14)0.0807 (15)−0.0302 (12)0.0491 (13)−0.0313 (12)
C110.0796 (15)0.0617 (13)0.0586 (12)−0.0225 (11)0.0377 (12)−0.0074 (10)
C120.0568 (11)0.0444 (10)0.0514 (10)−0.0058 (8)0.0234 (9)−0.0009 (8)
C130.0315 (8)0.0431 (9)0.0488 (9)0.0015 (7)0.0091 (7)0.0029 (7)
C140.0369 (9)0.0475 (10)0.0594 (11)−0.0039 (8)0.0076 (9)0.0079 (8)
C150.0550 (12)0.0554 (12)0.0684 (13)−0.0029 (10)0.0138 (11)0.0173 (10)
C160.0609 (13)0.0701 (14)0.0577 (12)0.0018 (11)0.0028 (11)0.0188 (11)
C170.0433 (11)0.0793 (15)0.0615 (13)−0.0053 (11)−0.0057 (10)0.0118 (11)
C180.0340 (9)0.0624 (12)0.0614 (12)−0.0061 (8)0.0077 (9)0.0094 (10)
C190.0508 (11)0.0727 (14)0.0510 (11)−0.0044 (10)0.0170 (9)0.0103 (10)
C200.096 (2)0.0965 (19)0.0498 (12)−0.0058 (16)0.0236 (13)0.0015 (12)
C210.104 (2)0.139 (3)0.0702 (16)−0.043 (2)0.0331 (16)0.0237 (17)
C220.0305 (8)0.0454 (9)0.0335 (7)−0.0032 (7)0.0076 (6)0.0004 (7)
C230.0312 (8)0.0503 (10)0.0426 (9)−0.0025 (7)0.0036 (7)−0.0051 (8)
C240.0332 (9)0.0517 (10)0.0541 (10)−0.0021 (8)0.0085 (8)0.0071 (8)
C250.0601 (14)0.0748 (16)0.0668 (14)0.0057 (12)−0.0146 (12)0.0038 (12)
N10.0279 (6)0.0386 (7)0.0373 (7)−0.0025 (5)0.0077 (5)−0.0008 (5)
N20.0495 (10)0.0756 (13)0.0749 (12)0.0097 (9)0.0185 (9)−0.0033 (10)
N30.0576 (12)0.0761 (14)0.1063 (17)0.0158 (11)0.0254 (12)−0.0021 (13)
N40.0472 (10)0.0623 (12)0.1054 (17)0.0130 (9)0.0089 (11)0.0096 (11)
N50.0376 (8)0.0515 (9)0.0681 (11)0.0017 (7)0.0009 (8)0.0113 (8)
O10.0542 (9)0.0838 (11)0.0987 (12)−0.0338 (8)0.0320 (9)−0.0138 (9)
O20.0399 (7)0.0483 (7)0.0540 (7)−0.0035 (5)0.0104 (6)−0.0138 (6)
S10.0327 (2)0.0534 (3)0.0470 (3)−0.00136 (19)0.00093 (18)−0.0049 (2)
O1W0.275 (9)0.202 (7)0.68 (2)0.0000.242 (13)0.000
C2—N11.489 (2)C16—C171.370 (3)
C2—C131.532 (2)C16—H160.9300
C2—C31.535 (2)C17—C181.390 (3)
C2—H20.9800C17—H170.9300
C3—C41.507 (3)C18—H180.9300
C3—C191.551 (3)C19—C201.522 (3)
C3—H30.9800C19—C211.530 (3)
C4—O11.209 (2)C19—H190.9800
C4—C51.503 (3)C20—H20A0.9600
C5—C61.533 (2)C20—H20B0.9600
C5—H5A0.9700C20—H20C0.9600
C5—H5B0.9700C21—H21A0.9600
C6—N11.484 (2)C21—H21B0.9600
C6—C71.514 (2)C21—H21C0.9600
C6—H60.9800C22—O21.228 (2)
C7—C81.383 (3)C22—N11.357 (2)
C7—C121.385 (3)C22—C231.517 (2)
C8—C91.379 (3)C23—S11.8052 (17)
C8—H80.9300C23—H23A0.9700
C9—C101.367 (4)C23—H23B0.9700
C9—H90.9300C24—N21.313 (3)
C10—C111.378 (3)C24—N51.338 (2)
C10—H100.9300C24—S11.741 (2)
C11—C121.374 (3)C25—N51.452 (3)
C11—H110.9300C25—H25A0.9600
C12—H120.9300C25—H25B0.9600
C13—C141.382 (3)C25—H25C0.9600
C13—C181.385 (2)N2—N31.362 (3)
C14—C151.384 (3)N3—N41.279 (3)
C14—H140.9300N4—N51.347 (3)
C15—C161.372 (3)O1W—H1W0.8163
C15—H150.9300
N1—C2—C13111.48 (14)C17—C16—H16120.2
N1—C2—C3109.35 (14)C15—C16—H16120.2
C13—C2—C3114.81 (14)C16—C17—C18120.61 (19)
N1—C2—H2106.9C16—C17—H17119.7
C13—C2—H2106.9C18—C17—H17119.7
C3—C2—H2106.9C13—C18—C17120.36 (19)
C4—C3—C2109.80 (15)C13—C18—H18119.8
C4—C3—C19109.92 (17)C17—C18—H18119.8
C2—C3—C19113.18 (15)C20—C19—C21110.3 (2)
C4—C3—H3107.9C20—C19—C3111.99 (19)
C2—C3—H3107.9C21—C19—C3111.05 (18)
C19—C3—H3107.9C20—C19—H19107.8
O1—C4—C5120.56 (19)C21—C19—H19107.8
O1—C4—C3123.12 (19)C3—C19—H19107.8
C5—C4—C3116.29 (15)C19—C20—H20A109.5
C4—C5—C6116.04 (15)C19—C20—H20B109.5
C4—C5—H5A108.3H20A—C20—H20B109.5
C6—C5—H5A108.3C19—C20—H20C109.5
C4—C5—H5B108.3H20A—C20—H20C109.5
C6—C5—H5B108.3H20B—C20—H20C109.5
H5A—C5—H5B107.4C19—C21—H21A109.5
N1—C6—C7113.78 (13)C19—C21—H21B109.5
N1—C6—C5110.17 (14)H21A—C21—H21B109.5
C7—C6—C5108.64 (14)C19—C21—H21C109.5
N1—C6—H6108.0H21A—C21—H21C109.5
C7—C6—H6108.0H21B—C21—H21C109.5
C5—C6—H6108.0O2—C22—N1123.69 (16)
C8—C7—C12118.77 (18)O2—C22—C23119.90 (15)
C8—C7—C6119.93 (16)N1—C22—C23116.41 (14)
C12—C7—C6121.23 (16)C22—C23—S1108.28 (12)
C9—C8—C7120.4 (2)C22—C23—H23A110.0
C9—C8—H8119.8S1—C23—H23A110.0
C7—C8—H8119.8C22—C23—H23B110.0
C10—C9—C8120.5 (2)S1—C23—H23B110.0
C10—C9—H9119.7H23A—C23—H23B108.4
C8—C9—H9119.7N2—C24—N5108.97 (18)
C9—C10—C11119.5 (2)N2—C24—S1127.57 (15)
C9—C10—H10120.3N5—C24—S1123.46 (16)
C11—C10—H10120.3N5—C25—H25A109.5
C12—C11—C10120.5 (2)N5—C25—H25B109.5
C12—C11—H11119.8H25A—C25—H25B109.5
C10—C11—H11119.8N5—C25—H25C109.5
C11—C12—C7120.4 (2)H25A—C25—H25C109.5
C11—C12—H12119.8H25B—C25—H25C109.5
C7—C12—H12119.8C22—N1—C6121.37 (13)
C14—C13—C18118.14 (17)C22—N1—C2118.73 (14)
C14—C13—C2118.02 (15)C6—N1—C2119.27 (13)
C18—C13—C2123.84 (17)C24—N2—N3105.37 (19)
C13—C14—C15121.32 (18)N4—N3—N2111.0 (2)
C13—C14—H14119.3N3—N4—N5106.89 (18)
C15—C14—H14119.3C24—N5—N4107.78 (19)
C16—C15—C14120.0 (2)C24—N5—C25130.34 (19)
C16—C15—H15120.0N4—N5—C25121.86 (18)
C14—C15—H15120.0C24—S1—C2396.05 (9)
C17—C16—C15119.6 (2)
N1—C2—C3—C459.75 (18)C2—C13—C18—C17179.1 (2)
C13—C2—C3—C4−66.4 (2)C16—C17—C18—C130.4 (4)
N1—C2—C3—C19−63.5 (2)C4—C3—C19—C20−176.12 (19)
C13—C2—C3—C19170.36 (17)C2—C3—C19—C20−53.0 (2)
C2—C3—C4—O1155.9 (2)C4—C3—C19—C2160.0 (3)
C19—C3—C4—O1−79.0 (2)C2—C3—C19—C21−176.8 (2)
C2—C3—C4—C5−22.2 (2)O2—C22—C23—S1−14.3 (2)
C19—C3—C4—C5102.97 (19)N1—C22—C23—S1166.62 (12)
O1—C4—C5—C6151.13 (19)O2—C22—N1—C6−179.37 (15)
C3—C4—C5—C6−30.8 (2)C23—C22—N1—C6−0.3 (2)
C4—C5—C6—N145.1 (2)O2—C22—N1—C29.8 (2)
C4—C5—C6—C7170.36 (15)C23—C22—N1—C2−171.18 (14)
N1—C6—C7—C8−135.30 (16)C7—C6—N1—C2261.59 (19)
C5—C6—C7—C8101.58 (18)C5—C6—N1—C22−176.13 (14)
N1—C6—C7—C1247.8 (2)C7—C6—N1—C2−127.61 (15)
C5—C6—C7—C12−75.3 (2)C5—C6—N1—C2−5.3 (2)
C12—C7—C8—C90.9 (3)C13—C2—N1—C22−107.47 (17)
C6—C7—C8—C9−176.10 (17)C3—C2—N1—C22124.49 (16)
C7—C8—C9—C10−0.2 (3)C13—C2—N1—C681.48 (17)
C8—C9—C10—C11−0.7 (3)C3—C2—N1—C6−46.55 (19)
C9—C10—C11—C121.0 (3)N5—C24—N2—N30.1 (2)
C10—C11—C12—C7−0.3 (3)S1—C24—N2—N3−179.61 (17)
C8—C7—C12—C11−0.7 (3)C24—N2—N3—N40.3 (3)
C6—C7—C12—C11176.30 (17)N2—N3—N4—N5−0.6 (3)
N1—C2—C13—C1455.1 (2)N2—C24—N5—N4−0.4 (2)
C3—C2—C13—C14−179.87 (17)S1—C24—N5—N4179.29 (15)
N1—C2—C13—C18−125.88 (19)N2—C24—N5—C25177.7 (2)
C3—C2—C13—C18−0.8 (3)S1—C24—N5—C25−2.5 (3)
C18—C13—C14—C152.1 (3)N3—N4—N5—C240.6 (3)
C2—C13—C14—C15−178.76 (19)N3—N4—N5—C25−177.7 (2)
C13—C14—C15—C16−1.1 (4)N2—C24—S1—C23−19.8 (2)
C14—C15—C16—C17−0.4 (4)N5—C24—S1—C23160.54 (17)
C15—C16—C17—C180.7 (4)C22—C23—S1—C24−176.64 (13)
C14—C13—C18—C17−1.8 (3)
D—H···AD—HH···AD···AD—H···A
C25—H25C···O1i0.962.473.406 (3)166
C18—H18···O1ii0.932.543.312 (2)140
C25—H25B···N4iii0.962.543.472 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C25—H25C⋯O1i 0.962.473.406 (3)166
C18—H18⋯O1ii 0.932.543.312 (2)140
C25—H25B⋯N4iii 0.962.543.472 (3)165

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and spectral characterization of a new class of N-(N-methylpiperazinoacetyl)-2,6-diarylpiperidin-4-ones: antimicrobial, analgesic and antipyretic studies.

Authors:  G Aridoss; P Parthiban; R Ramachandran; M Prakash; S Kabilan; Yeon Tae Jeong
Journal:  Eur J Med Chem       Date:  2008-04-07       Impact factor: 6.514

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.