Literature DB >> 24454048

Di-μ-iodido-bis-(iodido-{methyl 4-[(pyridin-2-yl-methyl-idene)amino]-benzoate-κ(2) N,N'}cadmium).

Tushar S Basu Baul1, Sajal Kundu1, Seik Weng Ng2, Edward R T Tiekink3.   

Abstract

The complete binuclear molecule of the title compound, [Cd2I4(C14H12N2O2)2], is generated by the application of a centre of inversion. The Cd-I bond lengths of the central core are close and uniformly longer than the exocyclic Cd-I bond. The coordination sphere of the Cd(II) atom is completed by two N atoms of a chelating methyl 4-[(pyridin-2-yl-methyl-idene)amino]-benzoate ligand, and is based on a square pyramid with the terminal I atom in the apical position. The three-dimensional crystal packing is stabilized by C-H⋯O and C-H⋯π inter-actions, each involving the pyridine ring.

Entities:  

Year:  2013        PMID: 24454048      PMCID: PMC3884272          DOI: 10.1107/S160053681302905X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For spectroscopic, biological and structural studies of zinc triad elements with (E)-N-(pyridin-2-yl­methyl­idene)aryl­amine ligands, see: Basu Baul, Kundu, Höpfl et al. (2013 ▶); Basu Baul, Kundu, Linden et al. (2013 ▶); Basu Baul, Kundu, Mitra et al. (2013 ▶). For additional structural analysis, see: Addison et al. (1984 ▶).

Experimental

Crystal data

[Cd2I4(C14H12N2O2)2] M = 1212.91 Triclinic, a = 8.4883 (3) Å b = 9.3677 (5) Å c = 10.9029 (5) Å α = 109.516 (5)° β = 95.868 (3)° γ = 90.242 (4)° V = 812.18 (6) Å3 Z = 1 Mo Kα radiation μ = 5.15 mm−1 T = 100 K 0.20 × 0.15 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▶) T min = 0.698, T max = 1.000 11886 measured reflections 3738 independent reflections 3374 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.050 S = 1.00 3738 reflections 191 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −1.04 e Å−3 Data collection: CrysAlis PRO (Agilent, 2013 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) general, I. DOI: 10.1107/S160053681302905X/hg5357sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302905X/hg5357Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd2I4(C14H12N2O2)2]Z = 1
Mr = 1212.91F(000) = 560
Triclinic, P1Dx = 2.480 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4883 (3) ÅCell parameters from 5933 reflections
b = 9.3677 (5) Åθ = 2.3–27.5°
c = 10.9029 (5) ŵ = 5.15 mm1
α = 109.516 (5)°T = 100 K
β = 95.868 (3)°Prism, yellow
γ = 90.242 (4)°0.20 × 0.15 × 0.10 mm
V = 812.18 (6) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector3738 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3374 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.031
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.3°
ω scanh = −10→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −12→12
Tmin = 0.698, Tmax = 1.000l = −14→14
11886 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.022Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.050H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.021P)2 + 0.5485P] where P = (Fo2 + 2Fc2)/3
3738 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = −1.04 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.36407 (2)0.52109 (2)0.344025 (19)0.01447 (6)
I20.54922 (2)0.97175 (3)0.69338 (2)0.01683 (6)
Cd0.39702 (2)0.69721 (3)0.61836 (2)0.01149 (6)
N10.2891 (3)0.6752 (3)0.8000 (2)0.0118 (5)
N20.1161 (3)0.7293 (3)0.5962 (2)0.0110 (5)
O1−0.1491 (3)0.9351 (3)0.1141 (2)0.0162 (5)
O2−0.3079 (3)0.7290 (3)0.0766 (2)0.0206 (5)
C10.3737 (4)0.6588 (4)0.9039 (3)0.0153 (7)
H10.48580.65790.90630.018*
C20.3043 (4)0.6428 (4)1.0096 (3)0.0150 (7)
H20.36820.63401.08330.018*
C30.1418 (4)0.6401 (4)1.0051 (3)0.0157 (7)
H30.09150.62541.07410.019*
C40.0520 (4)0.6593 (4)0.8977 (3)0.0139 (7)
H4−0.06040.65820.89240.017*
C50.1304 (4)0.6800 (4)0.7980 (3)0.0123 (6)
C60.0422 (4)0.7113 (4)0.6870 (3)0.0119 (6)
H6−0.06970.71810.68260.014*
C70.0294 (3)0.7576 (4)0.4877 (3)0.0107 (6)
C8−0.1235 (4)0.6954 (4)0.4383 (3)0.0130 (6)
H8−0.17570.63740.48000.016*
C9−0.1987 (4)0.7191 (4)0.3279 (3)0.0153 (7)
H9−0.30210.67610.29330.018*
C10−0.1227 (3)0.8059 (4)0.2677 (3)0.0103 (6)
C110.0284 (3)0.8706 (4)0.3191 (3)0.0115 (6)
H110.07850.93260.27980.014*
C120.1058 (3)0.8445 (4)0.4279 (3)0.0114 (6)
H120.21010.88570.46130.014*
C13−0.2045 (4)0.8179 (4)0.1441 (3)0.0135 (7)
C14−0.2324 (4)0.9537 (4)−0.0024 (3)0.0175 (7)
H14A−0.23630.8575−0.07520.026*
H14B−0.17671.0318−0.02480.026*
H14C−0.34060.98430.01440.026*
U11U22U33U12U13U23
I10.01401 (11)0.01747 (12)0.01205 (11)0.00245 (8)0.00116 (8)0.00518 (9)
I20.01733 (11)0.01644 (12)0.01742 (11)−0.00593 (9)−0.00164 (8)0.00774 (9)
Cd0.01011 (11)0.01394 (13)0.01083 (12)−0.00150 (9)0.00068 (9)0.00488 (10)
N10.0126 (13)0.0116 (14)0.0107 (13)−0.0020 (11)0.0000 (10)0.0034 (11)
N20.0121 (12)0.0113 (14)0.0104 (13)0.0009 (11)0.0005 (10)0.0050 (11)
O10.0210 (12)0.0152 (13)0.0131 (11)−0.0027 (10)−0.0055 (9)0.0078 (10)
O20.0213 (12)0.0181 (14)0.0211 (13)−0.0059 (10)−0.0088 (10)0.0084 (11)
C10.0165 (16)0.0139 (17)0.0142 (16)−0.0020 (13)−0.0026 (13)0.0043 (14)
C20.0225 (17)0.0125 (17)0.0108 (15)−0.0006 (13)−0.0015 (13)0.0058 (14)
C30.0226 (17)0.0133 (17)0.0139 (16)−0.0012 (13)0.0035 (13)0.0076 (14)
C40.0133 (15)0.0137 (17)0.0145 (16)0.0003 (13)0.0029 (12)0.0041 (14)
C50.0137 (15)0.0115 (17)0.0116 (15)−0.0002 (12)0.0019 (12)0.0037 (13)
C60.0109 (15)0.0113 (16)0.0130 (15)−0.0003 (12)0.0006 (12)0.0035 (13)
C70.0117 (15)0.0106 (16)0.0086 (14)0.0021 (12)−0.0001 (12)0.0020 (13)
C80.0128 (15)0.0144 (17)0.0132 (15)−0.0030 (13)0.0006 (12)0.0065 (14)
C90.0107 (15)0.0173 (18)0.0169 (16)−0.0026 (13)−0.0014 (13)0.0052 (14)
C100.0117 (14)0.0095 (16)0.0090 (14)0.0003 (12)−0.0006 (12)0.0024 (13)
C110.0123 (15)0.0095 (16)0.0127 (15)0.0021 (12)0.0040 (12)0.0030 (13)
C120.0067 (14)0.0132 (17)0.0134 (15)−0.0001 (12)0.0000 (12)0.0036 (13)
C130.0138 (15)0.0134 (17)0.0126 (15)0.0019 (13)−0.0006 (13)0.0040 (14)
C140.0246 (17)0.0163 (18)0.0125 (16)0.0001 (14)−0.0046 (14)0.0080 (14)
I1—Cd2.8765 (4)C4—C51.397 (4)
I1—Cdi2.9813 (3)C4—H40.9500
I2—Cd2.7023 (4)C5—C61.471 (4)
Cd—N12.333 (2)C6—H60.9500
Cd—N22.402 (2)C7—C121.394 (4)
Cd—I1i2.9813 (3)C7—C81.399 (4)
N1—C11.332 (4)C8—C91.388 (4)
N1—C51.346 (4)C8—H80.9500
N2—C61.280 (4)C9—C101.396 (4)
N2—C71.430 (4)C9—H90.9500
O1—C131.342 (4)C10—C111.395 (4)
O1—C141.452 (4)C10—C131.491 (4)
O2—C131.207 (4)C11—C121.390 (4)
C1—C21.396 (4)C11—H110.9500
C1—H10.9500C12—H120.9500
C2—C31.375 (5)C14—H14A0.9800
C2—H20.9500C14—H14B0.9800
C3—C41.394 (4)C14—H14C0.9800
C3—H30.9500
Cd—I1—Cdi92.716 (9)C4—C5—C6121.0 (3)
N1—Cd—N270.33 (8)N2—C6—C5120.1 (3)
N1—Cd—I2107.66 (7)N2—C6—H6119.9
N2—Cd—I2109.09 (6)C5—C6—H6119.9
N1—Cd—I1134.10 (7)C12—C7—C8120.5 (3)
N2—Cd—I187.44 (6)C12—C7—N2117.5 (3)
I2—Cd—I1117.588 (10)C8—C7—N2122.0 (3)
N1—Cd—I1i86.88 (6)C9—C8—C7119.6 (3)
N2—Cd—I1i141.81 (6)C9—C8—H8120.2
I2—Cd—I1i106.827 (10)C7—C8—H8120.2
I1—Cd—I1i87.284 (9)C8—C9—C10120.1 (3)
C1—N1—C5118.7 (3)C8—C9—H9119.9
C1—N1—Cd124.5 (2)C10—C9—H9119.9
C5—N1—Cd116.87 (19)C11—C10—C9120.1 (3)
C6—N2—C7119.8 (3)C11—C10—C13122.2 (3)
C6—N2—Cd115.35 (19)C9—C10—C13117.6 (3)
C7—N2—Cd124.74 (18)C12—C11—C10120.1 (3)
C13—O1—C14114.2 (2)C12—C11—H11120.0
N1—C1—C2122.7 (3)C10—C11—H11120.0
N1—C1—H1118.6C11—C12—C7119.6 (3)
C2—C1—H1118.6C11—C12—H12120.2
C3—C2—C1118.8 (3)C7—C12—H12120.2
C3—C2—H2120.6O2—C13—O1123.6 (3)
C1—C2—H2120.6O2—C13—C10123.2 (3)
C2—C3—C4119.0 (3)O1—C13—C10113.2 (3)
C2—C3—H3120.5O1—C14—H14A109.5
C4—C3—H3120.5O1—C14—H14B109.5
C3—C4—C5118.8 (3)H14A—C14—H14B109.5
C3—C4—H4120.6O1—C14—H14C109.5
C5—C4—H4120.6H14A—C14—H14C109.5
N1—C5—C4121.9 (3)H14B—C14—H14C109.5
N1—C5—C6117.1 (3)
Cdi—I1—Cd—N1−83.00 (8)Cd—N1—C5—C6−5.0 (4)
Cdi—I1—Cd—N2−142.16 (6)C3—C4—C5—N13.0 (5)
Cdi—I1—Cd—I2107.590 (12)C3—C4—C5—C6−175.7 (3)
Cdi—I1—Cd—I1i0.0C7—N2—C6—C5179.1 (3)
N2—Cd—N1—C1−175.4 (3)Cd—N2—C6—C52.6 (4)
I2—Cd—N1—C1−70.8 (3)N1—C5—C6—N21.5 (5)
I1—Cd—N1—C1119.0 (2)C4—C5—C6—N2−179.7 (3)
I1i—Cd—N1—C135.8 (3)C6—N2—C7—C12150.0 (3)
N2—Cd—N1—C54.5 (2)Cd—N2—C7—C12−33.8 (4)
I2—Cd—N1—C5109.0 (2)C6—N2—C7—C8−32.9 (5)
I1—Cd—N1—C5−61.1 (2)Cd—N2—C7—C8143.3 (2)
I1i—Cd—N1—C5−144.3 (2)C12—C7—C8—C90.8 (5)
N1—Cd—N2—C6−3.7 (2)N2—C7—C8—C9−176.2 (3)
I2—Cd—N2—C6−106.2 (2)C7—C8—C9—C10−0.7 (5)
I1—Cd—N2—C6135.4 (2)C8—C9—C10—C11−0.8 (5)
I1i—Cd—N2—C653.1 (3)C8—C9—C10—C13175.7 (3)
N1—Cd—N2—C7−180.0 (3)C9—C10—C11—C122.2 (5)
I2—Cd—N2—C777.5 (2)C13—C10—C11—C12−174.0 (3)
I1—Cd—N2—C7−40.9 (2)C10—C11—C12—C7−2.1 (5)
I1i—Cd—N2—C7−123.2 (2)C8—C7—C12—C110.6 (5)
C5—N1—C1—C21.5 (5)N2—C7—C12—C11177.7 (3)
Cd—N1—C1—C2−178.6 (2)C14—O1—C13—O24.4 (4)
N1—C1—C2—C31.7 (5)C14—O1—C13—C10−177.0 (2)
C1—C2—C3—C4−2.5 (5)C11—C10—C13—O2156.5 (3)
C2—C3—C4—C50.2 (5)C9—C10—C13—O2−19.9 (5)
C1—N1—C5—C4−3.9 (5)C11—C10—C13—O1−22.1 (4)
Cd—N1—C5—C4176.3 (3)C9—C10—C13—O1161.5 (3)
C1—N1—C5—C6174.9 (3)
D—H···AD—HH···AD···AD—H···A
C1—H1···O2ii0.952.343.066 (4)133
C14—H14B···Cg1iii0.982.793.416 (4)123
Table 1

Selected bond lengths (Å)

I1—Cd2.8765 (4)
I1—Cdi 2.9813 (3)
I2—Cd2.7023 (4)
Cd—N12.333 (2)
Cd—N22.402 (2)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1,C1–C5 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1⋯O2ii 0.952.343.066 (4)133
C14—H14BCg1iii 0.982.793.416 (4)123

Symmetry codes: (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and characterization of some water soluble Zn(II) complexes with (E)-N-(pyridin-2-ylmethylene)arylamines that regulate tumour cell death by interacting with DNA.

Authors:  Tushar S Basu Baul; Sajal Kundu; Anthony Linden; Nune Raviprakash; Sunil K Manna; M Fátima C Guedes da Silva
Journal:  Dalton Trans       Date:  2013-10-30       Impact factor: 4.390

3.  The influence of counter ion and ligand methyl substitution on the solid-state structures and photophysical properties of mercury(II) complexes with (E)-N-(pyridin-2-ylmethylidene)arylamines.

Authors:  Tushar S Basu Baul; Sajal Kundu; Sivaprasad Mitra; Herbert Höpfl; Edward R T Tiekink; Anthony Linden
Journal:  Dalton Trans       Date:  2012-11-22       Impact factor: 4.390

  3 in total

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