Literature DB >> 24454034

Hexa-aqua-bis-[3,5-bis-(hy-droxy-imino)-1-methyl-2,4,6-trioxo-cyclo-hexa-nido-κ(2) N (3),O (4)]barium tetrahydrate.

Nguyen Dinh Do1, Olga Kovalchukova2, Adam Stash3, Svetlana Strashnova2.   

Abstract

In the title compound, [Ba(C7H5N2O5)2(H2O)6]·4H2O, the Ba(2+) cation lies on a twofold rotation axis and is ten-coordinated by two 3,5-bis-(hy-droxy-imino)-1-methyl-2,4,6-trioxo-cyclo-hexa-n-ide oxo O atoms [Ba-O = 2.8715 (17) Å], two hy-droxy-imino N atoms [Ba-N = 3.036 (2) Å], and six water mol-ecules [Ba-O = 2.847 (2), 2.848 (2), and 2.880 (2) Å]. The 3,5-bis-(hy-droxy-imino)-1-methyl-2,4,6-trioxo-cyclo-hexa-nide monoanions act in a bidentate chelating manner, coordinating through an N atom of the non-deprotonated hy-droxy-imino group and an O atom of the neighboring oxo group. Two lattice water mol-ecules are located in the cavities of the framework and are involved in hydrogen bonding to O atoms of one of the coordinating water mol-ecules and the O atom of a keto group of the ligand. As a result, a three-dimensional network is formed.

Entities:  

Year:  2013        PMID: 24454034      PMCID: PMC3884258          DOI: 10.1107/S1600536813027761

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and crystal structure of sodium 3,5-bis­(hy­droxy­imino)-1-methyl-2,4,6- trioxo­cyclo­hexa­nide, see: Kovalchukova et al. (2012 ▶). For related structures of metal complexes with 1,2-benzo(naphto)quinone-1-oximes, see: Chakravorty (1974 ▶); Charalambous et al. (1993 ▶, 1995 ▶, 1996 ▶); Adatia et al. (1996 ▶); Basu & Chakravorty (1992 ▶); McPartlin (1973 ▶); Djinovic et al. (1992 ▶); Liu et al. (2010 ▶). For applications of related complexes as catalysts, see: Gharah et al. (2009 ▶).

Experimental

Crystal data

[Ba(C7H5N2O5)2(H2O)6]·4H2O M = 711.76 Monoclinic, a = 17.235 (3) Å b = 6.736 (1) Å c = 23.074 (5) Å β = 108.61 (3)° V = 2538.7 (9) Å3 Z = 4 Mo Kα radiation μ = 1.66 mm−1 T = 293 K 0.33 × 0.12 × 0.07 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: part of the refinement model (ΔF) (Walker & Stuart, 1983 ▶) T min = 0.370, T max = 0.780 2429 measured reflections 2346 independent reflections 1755 reflections with I > 2σ(I) R int = 0.019 3 standard reflections every 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.018 wR(F 2) = 0.048 S = 0.98 2346 reflections 216 parameters 17 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.90 e Å−3 Data collection: CAD-4-PC (Enraf–Nonius, 1993 ▶); cell refinement: CAD-4-PC; data reduction: CAD-4-PC; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CIFTAB97 (Sheldrick, 2008 ▶) and SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813027761/bv2225sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813027761/bv2225Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ba(C7H5N2O5)2(H2O)6]·4H2OF(000) = 1432
Mr = 711.76Dx = 1.862 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 17.235 (3) Åθ = 9.2–11.7°
b = 6.736 (1) ŵ = 1.66 mm1
c = 23.074 (5) ÅT = 293 K
β = 108.61 (3)°Plate, red
V = 2538.7 (9) Å30.33 × 0.12 × 0.07 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1755 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
β-filter monochromatorθmax = 25.5°, θmin = 1.9°
ω/2θ scansh = 0→20
Absorption correction: part of the refinement model (ΔF) (Walker & Stuart, 1983)k = −8→0
Tmin = 0.370, Tmax = 0.780l = −27→26
2429 measured reflections3 standard reflections every 60 min
2346 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.018Hydrogen site location: difference Fourier map
wR(F2) = 0.048H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.0317P)2] where P = (Fo2 + 2Fc2)/3
2346 reflections(Δ/σ)max = 0.001
216 parametersΔρmax = 0.47 e Å3
17 restraintsΔρmin = −0.90 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ba10.50000.24104 (3)0.75000.02124 (7)
O10.56648 (10)0.2550 (3)0.65071 (7)0.0332 (4)
O30.54847 (10)0.3322 (3)0.44397 (7)0.0317 (4)
O50.32241 (10)0.0962 (3)0.49495 (7)0.0349 (4)
O110.48141 (12)0.6073 (3)0.68255 (8)0.0377 (4)
O120.59225 (10)−0.1143 (3)0.75770 (9)0.0368 (4)
O130.32986 (11)0.3326 (3)0.70959 (8)0.0371 (4)
O140.24224 (11)−0.0492 (3)0.70127 (9)0.0447 (5)
O150.80288 (12)0.0550 (3)0.60419 (10)0.0486 (5)
O210.67935 (10)0.3795 (3)0.52748 (8)0.0335 (4)
O610.33722 (12)0.0432 (3)0.60383 (8)0.0443 (5)
N20.64131 (11)0.3306 (3)0.56837 (9)0.0259 (4)
N60.41475 (12)0.1133 (3)0.61886 (9)0.0317 (4)
C10.52814 (12)0.2383 (3)0.59644 (9)0.0226 (4)
C20.56427 (13)0.2839 (3)0.54772 (10)0.0212 (4)
C30.51345 (14)0.2780 (3)0.48228 (10)0.0214 (4)
C40.43167 (14)0.2147 (3)0.46508 (9)0.0230 (4)
C50.39533 (13)0.1576 (3)0.50912 (10)0.0235 (4)
C60.44222 (13)0.1663 (3)0.57513 (10)0.0222 (4)
C70.38032 (15)0.2124 (4)0.39871 (10)0.0314 (5)
H710.32450.24220.39510.038*
H720.38310.08340.38180.038*
H730.40050.31010.37690.038*
H210.646 (2)0.360 (7)0.4916 (14)0.077 (4)*
H610.321 (2)0.050 (6)0.5645 (14)0.077 (4)*
H1110.470 (2)0.606 (6)0.6438 (5)0.077 (4)*
H1120.4404 (16)0.664 (6)0.6874 (16)0.077 (4)*
H1210.6431 (8)−0.096 (6)0.7668 (16)0.077 (4)*
H1220.582 (2)−0.198 (5)0.7293 (14)0.077 (4)*
H1310.302 (2)0.228 (4)0.7002 (17)0.077 (4)*
H1320.315 (2)0.399 (5)0.6766 (10)0.077 (4)*
H1410.217 (2)−0.083 (6)0.7256 (12)0.077 (4)*
H1420.2137 (19)−0.102 (6)0.6680 (9)0.077 (4)*
H1510.7660 (19)0.008 (5)0.5737 (12)0.077 (4)*
H1520.794 (3)0.1784 (18)0.6008 (18)0.077 (4)*
U11U22U33U12U13U23
Ba10.02168 (10)0.02131 (10)0.02071 (9)0.0000.00676 (6)0.000
O10.0286 (8)0.0467 (10)0.0227 (7)−0.0042 (8)0.0059 (6)−0.0036 (8)
O30.0325 (9)0.0387 (9)0.0265 (8)−0.0059 (8)0.0131 (7)0.0014 (7)
O50.0256 (8)0.0448 (10)0.0327 (9)−0.0101 (8)0.0070 (7)−0.0014 (8)
O110.0491 (11)0.0352 (10)0.0281 (8)0.0063 (8)0.0116 (8)0.0013 (7)
O120.0292 (8)0.0334 (9)0.0473 (10)−0.0028 (8)0.0114 (8)−0.0080 (8)
O130.0344 (9)0.0388 (10)0.0347 (9)0.0039 (8)0.0062 (8)0.0012 (8)
O140.0308 (9)0.0582 (13)0.0432 (10)−0.0059 (9)0.0092 (8)0.0087 (10)
O150.0353 (10)0.0522 (12)0.0471 (11)−0.0040 (10)−0.0025 (8)0.0100 (10)
O210.0273 (8)0.0412 (10)0.0351 (9)−0.0068 (8)0.0145 (7)0.0002 (8)
O610.0343 (9)0.0687 (14)0.0310 (9)−0.0242 (10)0.0120 (8)−0.0031 (9)
N20.0267 (10)0.0223 (9)0.0292 (10)−0.0008 (8)0.0097 (8)−0.0012 (8)
N60.0294 (10)0.0372 (12)0.0293 (10)−0.0115 (9)0.0105 (8)−0.0031 (9)
C10.0246 (10)0.0187 (9)0.0241 (9)0.0008 (9)0.0073 (8)−0.0011 (9)
C20.0235 (10)0.0137 (11)0.0263 (10)0.0013 (8)0.0078 (8)−0.0025 (8)
C30.0269 (10)0.0138 (11)0.0242 (9)0.0021 (8)0.0092 (8)0.0000 (8)
C40.0293 (11)0.0156 (11)0.0226 (10)0.0022 (8)0.0064 (8)0.0005 (8)
C50.0229 (11)0.0180 (10)0.0277 (11)−0.0004 (9)0.0054 (8)−0.0018 (9)
C60.0250 (11)0.0174 (9)0.0244 (10)0.0001 (9)0.0082 (9)−0.0011 (8)
C70.0352 (12)0.0301 (13)0.0245 (10)−0.0031 (9)0.0033 (9)0.0003 (9)
Ba1—O132.8467 (19)O15—H1510.846 (10)
Ba1—O13i2.8467 (19)O15—H1520.845 (10)
Ba1—O122.8475 (19)O21—N21.350 (3)
Ba1—O12i2.8475 (19)O21—H210.86 (3)
Ba1—O1i2.8715 (17)O61—N61.354 (3)
Ba1—O12.8715 (17)O61—H610.86 (3)
Ba1—O11i2.8799 (19)N2—C21.298 (3)
Ba1—O112.8799 (19)N6—C61.294 (3)
Ba1—N63.036 (2)C1—C21.481 (3)
Ba1—N6i3.036 (2)C1—C61.485 (3)
O1—C11.220 (3)C2—C31.485 (3)
O3—C31.273 (3)C3—O31.273 (3)
O5—C51.263 (3)C3—C41.403 (3)
O11—H1110.851 (10)C4—C51.407 (3)
O11—H1120.841 (10)C4—C71.504 (3)
O12—H1210.842 (10)C5—O51.263 (3)
O12—H1220.841 (10)C5—C61.480 (3)
O13—H1310.847 (10)C7—H710.9600
O13—H1320.847 (10)C7—H720.9600
O14—H1410.851 (10)C7—H730.9600
O14—H1420.849 (10)
O13—Ba1—O13i154.98 (9)Ba1—O11—H111121 (3)
O13—Ba1—O12134.33 (6)Ba1—O11—H112106 (3)
O13i—Ba1—O1270.45 (6)H111—O11—H112103 (2)
O13—Ba1—O12i70.45 (6)Ba1—O12—H121114 (3)
O13i—Ba1—O12i134.33 (5)Ba1—O12—H122123 (3)
O12—Ba1—O12i65.59 (7)H121—O12—H122104 (2)
O13—Ba1—O1i67.83 (5)Ba1—O13—H131111 (3)
O13i—Ba1—O1i111.29 (5)Ba1—O13—H132113 (3)
O12—Ba1—O1i109.55 (5)H131—O13—H132103 (2)
O12i—Ba1—O1i73.76 (5)H141—O14—H142102 (2)
O13—Ba1—O1111.30 (5)H151—O15—H152103 (2)
O13i—Ba1—O167.83 (5)N2—O21—H21108 (3)
O12—Ba1—O173.76 (5)N6—O61—H61102 (3)
O12i—Ba1—O1109.55 (5)C2—N2—O21118.06 (19)
O1i—Ba1—O1176.25 (8)C6—N6—O61118.25 (19)
O13—Ba1—O11i85.23 (6)C6—N6—Ba1121.19 (14)
O13i—Ba1—O11i73.27 (6)O61—N6—Ba1118.58 (13)
O12—Ba1—O11i136.29 (6)O1—C1—C2122.60 (19)
O12i—Ba1—O11i135.85 (5)O1—C1—C6121.73 (19)
O1i—Ba1—O11i62.92 (5)C2—C1—C6115.65 (18)
O1—Ba1—O11i113.53 (5)N2—C2—C1113.59 (19)
O13—Ba1—O1173.27 (6)N2—C2—C3125.6 (2)
O13i—Ba1—O1185.23 (6)C1—C2—C3120.79 (19)
O12—Ba1—O11135.85 (5)O3—C3—C4123.2 (2)
O12i—Ba1—O11136.29 (5)O3—C3—C4123.2 (2)
O1i—Ba1—O11113.53 (5)O3—C3—C2116.23 (19)
O1—Ba1—O1162.92 (5)O3—C3—C2116.23 (19)
O11i—Ba1—O1162.11 (7)C4—C3—C2120.62 (19)
O13—Ba1—N667.33 (6)C3—C4—C5121.15 (19)
O13i—Ba1—N6120.54 (6)C3—C4—C7120.2 (2)
O12—Ba1—N684.66 (6)C5—C4—C7118.7 (2)
O12i—Ba1—N667.46 (6)O5—C5—C4122.6 (2)
O1i—Ba1—N6127.95 (5)O5—C5—C4122.6 (2)
O1—Ba1—N653.38 (5)O5—C5—C6116.8 (2)
O11i—Ba1—N6135.75 (6)O5—C5—C6116.8 (2)
O11—Ba1—N676.65 (6)C4—C5—C6120.64 (19)
O13—Ba1—N6i120.54 (6)N6—C6—C5125.2 (2)
O13i—Ba1—N6i67.33 (6)N6—C6—C1113.97 (19)
O12—Ba1—N6i67.46 (6)C5—C6—C1120.87 (19)
O12i—Ba1—N6i84.66 (6)C4—C7—H71109.5
O1i—Ba1—N6i53.38 (5)C4—C7—H72109.5
O1—Ba1—N6i127.96 (5)H71—C7—H72109.5
O11i—Ba1—N6i76.65 (6)C4—C7—H73109.5
O11—Ba1—N6i135.76 (6)H71—C7—H73109.5
N6—Ba1—N6i147.08 (8)H72—C7—H73109.5
C1—O1—Ba1126.33 (14)
D—H···AD—HH···AD···AD—H···A
O21—H21···O30.86 (3)1.70 (3)2.476 (3)150 (4)
O61—H61···O50.86 (3)1.64 (3)2.469 (2)160 (4)
O11—H111···O3ii0.85 (1)1.99 (1)2.827 (2)167 (4)
O11—H112···O12iii0.84 (1)2.15 (3)2.854 (3)142 (4)
O12—H121···O14i0.84 (1)1.90 (1)2.739 (3)172 (4)
O12—H122···O11iv0.84 (1)2.17 (3)2.839 (3)137 (3)
O13—H131···O140.85 (1)2.13 (1)2.957 (3)165 (4)
O13—H132···O15v0.85 (1)1.93 (1)2.766 (3)169 (4)
O14—H141···O13vi0.85 (1)1.99 (1)2.835 (3)173 (4)
O15—H151···O5vii0.85 (1)1.94 (1)2.789 (3)177 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O21—H21⋯O30.86 (3)1.70 (3)2.476 (3)150 (4)
O61—H61⋯O50.86 (3)1.64 (3)2.469 (2)160 (4)
O11—H111⋯O3i 0.85 (1)1.99 (1)2.827 (2)167 (4)
O11—H112⋯O12ii 0.84 (1)2.15 (3)2.854 (3)142 (4)
O12—H121⋯O14iii 0.84 (1)1.90 (1)2.739 (3)172 (4)
O12—H122⋯O11iv 0.84 (1)2.17 (3)2.839 (3)137 (3)
O13—H131⋯O140.85 (1)2.13 (1)2.957 (3)165 (4)
O13—H132⋯O15v 0.85 (1)1.93 (1)2.766 (3)169 (4)
O14—H141⋯O13vi 0.85 (1)1.99 (1)2.835 (3)173 (4)
O15—H151⋯O5vii 0.85 (1)1.94 (1)2.789 (3)177 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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