Literature DB >> 24454020

Bis[μ-N-(pyridin-2-ylmeth-yl)pyridin-3-amine-κ(2) N:N']disilver(I) bis-(perchlorate) dimethyl sulfoxide disolvate.

Suk-Hee Moon1, Ki-Min Park2.   

Abstract

In the binuclear title compound, [Ag2(C11H11N3)2](ClO4)2·2C2H6SO, the complex cation is centrosymmetric, with the unique Ag(I) cation coordinated by two pyridine N atoms from two symmetry-related N-(pyridine-2-ylmeth-yl)pyridine-3-amine ligands in a geometry slightly distorted from linear [N-Ag-N = 170.78 (9)°], resulting in the formation of a 16-membered cyclic dimer. The two pyridine rings coordinating to the Ag(I) atom are almost perpendicular to each other [dihedral angle = 87.73 (10)°]. Inter-molecular Ag⋯O inter-actions [3.149 (3) and 2.686 (3) Å], N-H⋯O and C-H⋯O hydrogen bonds and C-H⋯π inter-actions between the cyclic dimers and the anions or the solvent mol-ecules lead to the formation of a three-dimensional supra-molecular network.

Entities:  

Year:  2013        PMID: 24454020      PMCID: PMC3884244          DOI: 10.1107/S1600536813026585

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures of AgI coordination polymers with symmetrical dipyridyl ligands, see: Lee et al. (2012 ▶); Leong & Vittal (2011 ▶); Park et al. (2010 ▶) and of AgI coordination polymers with unsymmetrical dipyridyl ligands, see: Moon & Park (2013 ▶); Zhang et al. (2013 ▶). For the synthesis of the ligand, see: Foxon et al. (2002 ▶); Lee et al. (2008 ▶).

Experimental

Crystal data

[Ag2(C11H11N3)2](ClO4)2·2C2H6OS M = 941.35 Monoclinic, a = 7.3620 (3) Å b = 11.1227 (5) Å c = 21.1248 (10) Å β = 95.328 (1)° V = 1722.34 (13) Å3 Z = 2 Mo Kα radiation μ = 1.48 mm−1 T = 173 K 0.45 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer 9537 measured reflections 3367 independent reflections 3096 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.086 S = 1.02 3367 reflections 217 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.65 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT-Plus (Bruker, 2000 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2005 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813026585/sj5353sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026585/sj5353Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ag2(C11H11N3)2](ClO4)2·2C2H6OSF(000) = 944
Mr = 941.35Dx = 1.815 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7360 reflections
a = 7.3620 (3) Åθ = 2.7–28.3°
b = 11.1227 (5) ŵ = 1.48 mm1
c = 21.1248 (10) ÅT = 173 K
β = 95.328 (1)°Block, colorless
V = 1722.34 (13) Å30.45 × 0.20 × 0.20 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3096 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.049
Graphite monochromatorθmax = 26.0°, θmin = 1.9°
φ and ω scansh = −9→8
9537 measured reflectionsk = −13→13
3367 independent reflectionsl = −25→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0399P)2 + 3.5438P] where P = (Fo2 + 2Fc2)/3
3367 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.65 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ag10.50109 (3)0.25805 (2)0.484406 (11)0.02344 (10)
N10.3332 (3)0.3841 (2)0.53484 (12)0.0200 (5)
N20.3266 (3)−0.1183 (2)0.55086 (12)0.0200 (5)
N30.1611 (3)0.1670 (2)0.48358 (12)0.0224 (5)
H30.20560.16040.44650.027*
C10.4183 (4)0.4681 (3)0.57264 (14)0.0229 (6)
H10.54370.48320.56860.028*
C20.3334 (4)0.5334 (3)0.61688 (15)0.0269 (7)
H20.39840.59240.64240.032*
C30.1510 (5)0.5108 (3)0.62316 (16)0.0305 (7)
H3A0.08860.55330.65360.037*
C40.0616 (4)0.4257 (3)0.58450 (17)0.0288 (7)
H4−0.06390.40960.58790.035*
C50.1546 (4)0.3632 (3)0.54062 (14)0.0201 (6)
C60.0546 (4)0.2732 (3)0.49703 (16)0.0240 (6)
H6A−0.05620.24690.51640.029*
H6B0.01450.31350.45630.029*
C70.1930 (4)0.0766 (3)0.52826 (14)0.0186 (6)
C80.1501 (4)0.0853 (3)0.59090 (15)0.0231 (6)
H80.09070.15480.60510.028*
C90.1955 (5)−0.0089 (3)0.63220 (15)0.0275 (7)
H90.1657−0.00490.67500.033*
C100.2841 (4)−0.1091 (3)0.61127 (15)0.0265 (7)
H100.3156−0.17270.64020.032*
C110.2807 (4)−0.0285 (3)0.51076 (14)0.0187 (6)
H110.3090−0.03620.46800.022*
Cl10.22314 (10)0.27926 (7)0.31521 (4)0.02713 (18)
O10.1356 (6)0.1764 (3)0.33725 (17)0.0789 (13)
O20.2542 (4)0.3637 (3)0.36785 (14)0.0448 (7)
O30.1082 (5)0.3355 (4)0.26650 (16)0.0698 (10)
O40.3925 (5)0.2503 (3)0.2927 (2)0.0716 (12)
S10.60059 (11)0.23249 (7)0.65444 (4)0.02617 (18)
O50.7044 (3)0.2308 (2)0.59577 (12)0.0329 (5)
C120.7185 (5)0.3371 (3)0.70810 (17)0.0378 (8)
H12A0.69990.41890.69150.045*
H12B0.84910.31840.71230.045*
H12C0.67090.33120.74980.045*
C130.6627 (6)0.0977 (4)0.6968 (2)0.0435 (9)
H13A0.60770.02850.67360.052*
H13B0.61870.10130.73920.052*
H13C0.79580.08930.70110.052*
U11U22U33U12U13U23
Ag10.02007 (14)0.02377 (15)0.02746 (16)0.00319 (8)0.00743 (10)−0.00257 (9)
N10.0173 (12)0.0213 (12)0.0218 (13)0.0015 (9)0.0038 (9)0.0011 (10)
N20.0171 (12)0.0227 (12)0.0201 (12)0.0000 (9)0.0017 (9)−0.0040 (10)
N30.0251 (13)0.0213 (13)0.0214 (13)0.0007 (10)0.0055 (10)−0.0009 (10)
C10.0199 (14)0.0255 (15)0.0236 (15)−0.0021 (12)0.0026 (11)0.0025 (12)
C20.0298 (17)0.0243 (15)0.0261 (16)0.0005 (13)0.0006 (13)−0.0054 (13)
C30.0281 (17)0.0325 (18)0.0313 (17)0.0059 (13)0.0056 (13)−0.0069 (14)
C40.0165 (14)0.0332 (17)0.0375 (18)0.0030 (12)0.0069 (13)−0.0017 (15)
C50.0169 (13)0.0212 (14)0.0221 (15)0.0008 (11)0.0013 (11)0.0061 (12)
C60.0170 (14)0.0236 (15)0.0310 (17)0.0014 (11)0.0010 (12)−0.0006 (13)
C70.0134 (13)0.0206 (14)0.0216 (14)−0.0032 (10)0.0004 (10)−0.0035 (11)
C80.0237 (15)0.0227 (15)0.0237 (15)−0.0005 (12)0.0064 (12)−0.0050 (12)
C90.0332 (18)0.0316 (17)0.0187 (14)0.0039 (13)0.0077 (12)−0.0018 (13)
C100.0292 (16)0.0281 (16)0.0221 (15)0.0026 (13)0.0016 (12)0.0026 (13)
C110.0145 (13)0.0238 (14)0.0183 (14)−0.0020 (11)0.0041 (10)−0.0031 (11)
Cl10.0197 (4)0.0316 (4)0.0305 (4)−0.0007 (3)0.0042 (3)0.0034 (3)
O10.127 (3)0.064 (2)0.0482 (19)−0.056 (2)0.023 (2)−0.0070 (17)
O20.0408 (15)0.0491 (16)0.0449 (16)−0.0090 (12)0.0067 (12)−0.0133 (13)
O30.067 (2)0.082 (3)0.055 (2)0.0250 (19)−0.0210 (16)0.0001 (18)
O40.0364 (18)0.107 (3)0.073 (3)0.0121 (17)0.0135 (17)−0.029 (2)
S10.0257 (4)0.0319 (4)0.0210 (4)0.0002 (3)0.0030 (3)−0.0023 (3)
O50.0330 (13)0.0431 (14)0.0235 (12)0.0003 (10)0.0071 (10)−0.0045 (10)
C120.046 (2)0.041 (2)0.0263 (17)−0.0081 (17)0.0023 (15)−0.0101 (15)
C130.051 (2)0.036 (2)0.043 (2)−0.0006 (17)0.0024 (18)0.0077 (17)
Ag1—N2i2.181 (2)C7—C81.392 (4)
Ag1—N12.208 (2)C7—C111.402 (4)
N1—C11.345 (4)C8—C91.385 (4)
N1—C51.352 (4)C8—H80.9500
N2—C111.332 (4)C9—C101.384 (4)
N2—C101.346 (4)C9—H90.9500
N2—Ag1i2.181 (2)C10—H100.9500
N3—C71.384 (4)C11—H110.9500
N3—C61.460 (4)Cl1—O41.412 (3)
N3—H30.8800Cl1—O11.413 (3)
C1—C21.379 (4)Cl1—O31.416 (3)
C1—H10.9500Cl1—O21.457 (3)
C2—C31.385 (5)S1—O51.515 (3)
C2—H20.9500S1—C131.784 (4)
C3—C41.377 (5)S1—C121.791 (4)
C3—H3A0.9500C12—H12A0.9800
C4—C51.389 (4)C12—H12B0.9800
C4—H40.9500C12—H12C0.9800
C5—C61.506 (4)C13—H13A0.9800
C6—H6A0.9900C13—H13B0.9800
C6—H6B0.9900C13—H13C0.9800
N2i—Ag1—N1170.78 (9)C9—C8—C7118.9 (3)
C1—N1—C5118.0 (3)C9—C8—H8120.5
C1—N1—Ag1118.47 (19)C7—C8—H8120.5
C5—N1—Ag1121.8 (2)C10—C9—C8120.1 (3)
C11—N2—C10118.6 (3)C10—C9—H9120.0
C11—N2—Ag1i115.99 (18)C8—C9—H9120.0
C10—N2—Ag1i124.9 (2)N2—C10—C9121.5 (3)
C7—N3—C6121.0 (3)N2—C10—H10119.3
C7—N3—H3119.5C9—C10—H10119.3
C6—N3—H3119.5N2—C11—C7123.6 (3)
N1—C1—C2123.6 (3)N2—C11—H11118.2
N1—C1—H1118.2C7—C11—H11118.2
C2—C1—H1118.2O4—Cl1—O1111.7 (3)
C1—C2—C3118.3 (3)O4—Cl1—O3110.0 (3)
C1—C2—H2120.8O1—Cl1—O3109.7 (3)
C3—C2—H2120.8O4—Cl1—O2108.8 (2)
C4—C3—C2118.8 (3)O1—Cl1—O2108.34 (19)
C4—C3—H3A120.6O3—Cl1—O2108.1 (2)
C2—C3—H3A120.6O5—S1—C13105.98 (17)
C3—C4—C5120.1 (3)O5—S1—C12105.90 (16)
C3—C4—H4119.9C13—S1—C1298.13 (19)
C5—C4—H4119.9S1—C12—H12A109.5
N1—C5—C4121.2 (3)S1—C12—H12B109.5
N1—C5—C6119.0 (3)H12A—C12—H12B109.5
C4—C5—C6119.8 (3)S1—C12—H12C109.5
N3—C6—C5114.6 (2)H12A—C12—H12C109.5
N3—C6—H6A108.6H12B—C12—H12C109.5
C5—C6—H6A108.6S1—C13—H13A109.5
N3—C6—H6B108.6S1—C13—H13B109.5
C5—C6—H6B108.6H13A—C13—H13B109.5
H6A—C6—H6B107.6S1—C13—H13C109.5
N3—C7—C8124.0 (3)H13A—C13—H13C109.5
N3—C7—C11118.6 (3)H13B—C13—H13C109.5
C8—C7—C11117.3 (3)
C5—N1—C1—C20.2 (4)C4—C5—C6—N3−143.6 (3)
Ag1—N1—C1—C2−165.1 (2)C6—N3—C7—C8−9.0 (4)
N1—C1—C2—C30.5 (5)C6—N3—C7—C11173.9 (3)
C1—C2—C3—C4−0.9 (5)N3—C7—C8—C9−177.2 (3)
C2—C3—C4—C50.7 (5)C11—C7—C8—C90.0 (4)
C1—N1—C5—C4−0.4 (4)C7—C8—C9—C100.8 (5)
Ag1—N1—C5—C4164.3 (2)C11—N2—C10—C9−0.3 (4)
C1—N1—C5—C6177.6 (3)Ag1i—N2—C10—C9170.8 (2)
Ag1—N1—C5—C6−17.7 (4)C8—C9—C10—N2−0.7 (5)
C3—C4—C5—N10.0 (5)C10—N2—C11—C71.2 (4)
C3—C4—C5—C6−178.0 (3)Ag1i—N2—C11—C7−170.7 (2)
C7—N3—C6—C575.8 (3)N3—C7—C11—N2176.4 (3)
N1—C5—C6—N338.4 (4)C8—C7—C11—N2−1.0 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3···O10.882.323.081 (4)144
C1—H1···O2ii0.952.563.214 (4)126
C6—H6A···O5iii0.992.553.495 (4)160
C11—H11···O5i0.952.553.191 (4)125
C12—H12C···O4iv0.982.493.270 (5)137
C13—H13A···Cg0.983.364.116 (5)136
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the N2/C7–C11 pyridine ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O10.882.323.081 (4)144
C1—H1⋯O2i 0.952.563.214 (4)126
C6—H6A⋯O5ii 0.992.553.495 (4)160
C11—H11⋯O5iii 0.952.553.191 (4)125
C12—H12C⋯O4iv 0.982.493.270 (5)137
C13—H13ACg 0.983.364.116 (5)136

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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