Literature DB >> 24453259

Computational approach to characterize causative factors and molecular indicators of chronic wound inflammation.

Sridevi Nagaraja1, Anders Wallqvist, Jaques Reifman, Alexander Y Mitrophanov.   

Abstract

Chronic inflammation is rapidly becoming recognized as a key contributor to numerous pathologies. Despite detailed investigations, understanding of the molecular mechanisms regulating inflammation is incomplete. Knowledge of such critical regulatory processes and informative indicators of chronic inflammation is necessary for efficacious therapeutic interventions and diagnostic support to clinicians. We used a computational modeling approach to elucidate the critical factors responsible for chronic inflammation and to identify robust molecular indicators of chronic inflammatory conditions. Our kinetic model successfully captured experimentally observed cell and cytokine dynamics for both acute and chronic inflammatory responses. Using sensitivity analysis, we identified macrophage influx and efflux rate modulation as the strongest inducing factor of chronic inflammation for a wide range of scenarios. Moreover, our model predicted that, among all major inflammatory mediators, IL-6, TGF-β, and PDGF may generally be considered the most sensitive and robust indicators of chronic inflammation, which is supported by existing, but limited, experimental evidence.

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Year:  2014        PMID: 24453259     DOI: 10.4049/jimmunol.1302481

Source DB:  PubMed          Journal:  J Immunol        ISSN: 0022-1767            Impact factor:   5.422


  21 in total

Review 1.  Knowledge gaps to understanding cardiac macrophage polarization following myocardial infarction.

Authors:  Merry L Lindsey; Jeffrey J Saucerman; Kristine Y DeLeon-Pennell
Journal:  Biochim Biophys Acta       Date:  2016-05-27

2.  Simulation of B cell affinity maturation explains enhanced antibody cross-reactivity induced by the polyvalent malaria vaccine AMA1.

Authors:  Sidhartha Chaudhury; Jaques Reifman; Anders Wallqvist
Journal:  J Immunol       Date:  2014-07-30       Impact factor: 5.422

3.  Modeling keratinocyte wound healing dynamics: Cell-cell adhesion promotes sustained collective migration.

Authors:  John T Nardini; Douglas A Chapnick; Xuedong Liu; David M Bortz
Journal:  J Theor Biol       Date:  2016-04-19       Impact factor: 2.691

4.  Demyelination patterns in a mathematical model of multiple sclerosis.

Authors:  M C Lombardo; R Barresi; E Bilotta; F Gargano; P Pantano; M Sammartino
Journal:  J Math Biol       Date:  2016-12-30       Impact factor: 2.259

5.  Antibacterial peptide NZ2114-loaded hydrogel accelerates Staphylococcus aureus-infected wound healing.

Authors:  Yan Huang; Na Yang; Da Teng; Ruoyu Mao; Ya Hao; Xuanxuan Ma; Lingyun Wei; Jianhua Wang
Journal:  Appl Microbiol Biotechnol       Date:  2022-05-07       Impact factor: 4.813

6.  A method for the inference of cytokine interaction networks.

Authors:  Joanneke E Jansen; Dominik Aschenbrenner; Holm H Uhlig; Mark C Coles; Eamonn A Gaffney
Journal:  PLoS Comput Biol       Date:  2022-06-22       Impact factor: 4.779

7.  A Computational, Tissue-Realistic Model of Pressure Ulcer Formation in Individuals with Spinal Cord Injury.

Authors:  Cordelia Ziraldo; Alexey Solovyev; Ana Allegretti; Shilpa Krishnan; M Kristi Henzel; Gwendolyn A Sowa; David Brienza; Gary An; Qi Mi; Yoram Vodovotz
Journal:  PLoS Comput Biol       Date:  2015-06-25       Impact factor: 4.475

Review 8.  Innate immune programing by endotoxin and its pathological consequences.

Authors:  Matthew C Morris; Elizabeth A Gilliam; Liwu Li
Journal:  Front Immunol       Date:  2015-01-06       Impact factor: 7.561

Review 9.  Overview of Methods for Overcoming Hindrance to Drug Delivery to Tumors, with Special Attention to Tumor Interstitial Fluid.

Authors:  Gianfranco Baronzio; Gurdev Parmar; Miriam Baronzio
Journal:  Front Oncol       Date:  2015-07-23       Impact factor: 6.244

10.  Computational Identification of Mechanistic Factors That Determine the Timing and Intensity of the Inflammatory Response.

Authors:  Sridevi Nagaraja; Jaques Reifman; Alexander Y Mitrophanov
Journal:  PLoS Comput Biol       Date:  2015-12-03       Impact factor: 4.475

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