| Literature DB >> 24443956 |
Hans-Joachim Gabius1, Klaus Kayser.
Abstract
Analyzing the flow of biological information is a fundamental challenge for basic sciences. The emerging results will then lend themselves to the development of new approaches for medical applications. Toward this end, the products of protein/lipid glycosylation deserve special attention. The covalent attachment of sugars to these carriers means much more than just a change of the carriers' physicochemical properties. In principle, the ubiquitous presence of glycoconjugates and the close inspection of the particular structural 'talents' of carbohydrates provide suggestive evidence for information coding by sugars. In fact, the theoretical number of 'words' (oligomers) formed by 'letters' (monosaccharides) is by far higher than by using nucleotides or amino acids. In other words, glycans harbor an unsurpassed coding capacity. The cyto- and histochemical detection of dynamic changes in the profile of cellular glycans (glycome, the equivalent of the proteome) by sugar receptors such as antibodies used as tools underscores the suitability of carbohydrates for such a task. The resulting staining patterns can be likened to a molecular fingerprint. By acting as ligand (counterreceptor) for endogenous receptors (tissue lectins), glycan epitopes become partners in a specific recognition pair, and the sugar-encoded information can then be translated into effects, e.g. in growth regulation. Of note, expression of both sides of such a pair, i.e. lectin and cognate glycan, can physiologically be orchestrated for optimal efficiency. Indeed, examples how to prevent autoimmune diseases by regulatory T cells and restrict carcinoma growth by a tumor suppressor attest occurrence of co-regulation. In consequence, these glycans have potential to establish a new class of functional biomarkers, and mapping presence of their receptors is warranted. In this review, the cyto- and histochemical methods, which contribute to explore information storage and transfer within the sugar code, are described. This introduction to the toolbox is flanked by illustrating the application of each type of tool in histopathology, with focus on adhesion/growth-regulating galectins. Together with an introduction to fundamental principles of the sugar code, the review is designed to guide into this field and to inspire respective research efforts. VIRTUAL SLIDES: The virtual slides for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/1670639891114983.Entities:
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Year: 2014 PMID: 24443956 PMCID: PMC4029355 DOI: 10.1186/1746-1596-9-4
Source DB: PubMed Journal: Diagn Pathol ISSN: 1746-1596 Impact factor: 2.644
Figure 1Illustration of the linkage points for oligomer formation in biomolecules by arrows. The phosphodiester bond in nucleic acid biosynthesis (a) and the peptide bond in protein biosynthesis (b) yield linear oligomers. In contrast, the glycosidic linkage in oligosaccharides can involve any hydroxyl group, opening the way to linear and also branched structures (c). Using d-glucose (Glc) as an example, its active form UDP-Glc allows conjugation of this sugar to carbohydrate acceptors to any hydroxyl group, as symbolized by arrows directed towards the hydroxy groups (for list of resulting diglucosides, please see Table 1). The anomeric position in chain elongation can vary, as symbolized by two bold arrows pointing away from the molecule (from [1], with permission).
Naturally occurring disaccharides formed from two glucose units
| α1 → 2 | kojibiose |
| β1 → 2 | sophorose |
| α1 → 3 | nigerose |
| β1 → 3 | laminaribiose |
| α1 → 4 | maltose |
| β1 → 4 | cellobiose |
| α1 → 6 | isomaltose |
| β1 → 6 | gentiobiose |
| α1↔α1 | trehalose |
All disaccharides are conversion or degradation products of natural polysaccharides and glycosides, except for trehalose which is present in bacteria, fungi and insects; arrows depict involvement of anomeric centers (from [1], with permission).
Figure 2Illustration of the equilibrium including the two anomeric forms of -glucose. The percentages of presence of the two anomeric hexopyranose and the open-chain forms in equilibrium are given in the bottom line (from [1], with permission).
Figure 3Illustration of the alphabet of the sugar language. Structural representation, name and symbol as well as the set of known acceptor positions (arrows) in glycoconjugates are given for each letter. Four sugars have l-configuration: fucose (6-deoxy-l-galactose), rhamnose (6-deoxy-l-mannose) and arabinose are introduced during chain elongation, whereas l-iduronic acid (IdoA) results from post-synthetic epimerization of glucuronic acid at C-5. The 1C4 conformation of IdoA (a) is in equilibrium with the 2SO form (b) in glycosaminoglycan chains where this uronic acid can be 2-sulfated (please see Figure 7d). All other “letters” are d-sugars. Neu5Ac, one of the more than 50 sialic acids, often terminates sugar chains in animal glycoconjugates. Kdo is a constituent of lipopolysaccharides in the cell walls of Gram-negative bacteria and is also found in cell wall polysaccharides of green algae and higher plants. Foreign to mammalian glycobiochemistry, microbial polysaccharides contain the furanose ring form of d-galactose and also d/l-arabinose indicated by an italic “f” derived from the heterocyclus furan. The α-anomer is prevalent for the pentose arabinose, e. g. in mycobacterial cell wall arabinogalactan and lipoarabinomannan. β1,5/6-Linked galactofuranoside is present in the arabinogalactan and the β1,3/6 linkage in lipopolysaccharides (from [1], with permission).
Figure 4Illustration of phosphorylated (phosphated) and sulfated (sulfurylated) glycan “words”. 6-Phosphorylation of a mannose moiety (in the context of a mannose-rich pentasaccharide) is the key section of a routing signal in lysosomal enzymes (a), 4-sulfation of the GalNAcβ1,4GlcNAc (LacdiNAc) epitope forms the “postal code” for clearance from circulation by hepatic endothelial cells of pituitary glycoprotein hormones labeled in such a way (b), the HNK-1 (human natural killer-1) epitope (3-sulfated GlcAβ1,3Galβ1,4GlcNAc) is involved in cell adhesion/migration in the nervous system (c) and the encircled 3-O-sulfation in the pentasaccharide’s center is essential for heparin’s anti-coagulant activity (d). All sugars are in their pyranose form. Please note that the central glucosamine unit has N,O-trisulfation and that the 2-sulfated IdoA, given in the 1C4 conformation, can also adopt the hinge-like 2SO skew-boat structure (please see Figure 3; about 60% or more for the 2SO form in equilibrium depending on the structural context) when present within glycosaminoglycan chains of the proteoglycan heparin. 2-Sulfation of IdoA serves two purposes: favoring the hinge-like 2SO conformation and precluding re-conversion to GlcA (from [1], with permission).
Overview of folds with capacity to bind sugars and of lectin classes
| β-sandwich (jelly-roll) | a) galectins | β-galactosides |
| b) calnexin, calreticulin | Glc1Man9Glc | |
| c) ERGIC-53, VIP36, VIPL | ManxGlc | |
| d) CRDa of Fbs1 in SCF E3 ubiquitin ligase and peptide- | Man3Glc | |
| | e) pentraxins | glycosaminoglycans, MOβDG, 3-sulfated Gal, Gal |
| | f) G-domains of the LNS family (laminin, agrin) | heparin |
| C-type | asialoglycoprotein receptor, collectins, selectins | Fuc, Gal, Gal |
| I-type (Ig fold) | N-CAM, TIM-3, siglecs | Man6Glc |
| P-type | mannose-6-phosphate receptors (MR) and proteins with MR homology domain (erlectin, OS-9) | Man-6-phosphate, Man5,8Glc |
| β-trefoil | a) fibroblast growth factors | heparan sulfate |
| b) cysteine-rich domain of C-type macrophage mannose receptor | Gal | |
| c) lectin domain in Gal | Gal | |
| d) hemolytic lectin CEL-III of sea cucumber and lectin EW29 of earthworm | Gal | |
| β-propeller | a) 4-bladed: tachylectin-3 | S-type lipopolysaccharide Glc |
| b) 5-bladed: tachylectin-2 | ||
| c) 6-bladed: tachylectin-1 | KDO | |
| β-prism I | secretory proteins zg16p/b | Man, heparan sulfate |
| β-prism II | pufferfish (fugu) lectin | Man |
| β-barrel with jelly-roll topology | tachylectin-4, eel ( | Fuc |
| Fibrinogen-like domain | a) ficolins | Glc |
| b) intelectins (mammalian, | Gal | |
| c) tachylectin-5 | ||
| d) slug ( | ||
| Link module | CD44, TSG-6, LYVE-1, aggregating proteoglycans | hyaluronic acid |
| Hevein-like domain | Tachycytin and spider ( | Gal |
| (β/α)8 barrel (glycoside hydrolase family 18) | YKL-40 (human cartilage glycoprotein-39; chitinase-like lectin) | (Glc |
| Short consensus repeat (complement control protein module) | Factor H (complement regulator) | glycosaminoglycans, sialic acid |
acarbohydrate recognition domain, bN-acetylgalactosaminyltransferases; adapted from [42], with permission.
Functions of animal and human lectins
| Recognition of stem region of | F-box proteins Fbs1 and Fbs2, which comprise the ligand-specific part of SCFb ubiquitin ligase complexes |
| Molecular chaperones with dual specificity for Glc2/Glc1Man9Glc | Malectin/ribophorin I complex, calnexin, calreticulin |
| Targeting of misfolded glycoproteins with Man8-5Glc | EDEM1,2c/Mnl1 (Htm1) (lectins or glycosidases?), Yos9p (MRHd domain) in yeast, erlectin (XTP3-Be) and OS-9f in mammals |
| Intracellular routing of glycoproteins and vesicles and apical delivery | Comitin, ERGIC53g and VIP36h (probably also ERGLi and VIPLj), galectins-3, -4 and -9, P-type lectins |
| Intracellular transport and extracellular assembly | Non-integrin 67 kDa elastin/laminin-binding protein |
| Enamel formation and biomineralization | Amelogenin |
| Inducer of membrane superimposition and zippering (formation of Birbeck granules) | Langerin (CD207) |
| Cell type-specific endocytosis | Cysteine-rich domain (β-trefoil) of the dimeric form of mannose receptor for Gal |
| Recognition of foreign glycans (β1,3-glucans, cell wall peptidoglycan, LOSn and LPSo), mycobacterial glycolipid or host-like epitopes | CR3p (CD11b/CD18, Mac-1 antigen), C-type lectins such as collectins, DC-SIGN, dectin-1, Mincle and RegIIIγ (murine)q or HIP/PAP (human), ficolins, galectins, immulectins, intelectins, |
| Recognition of foreign or aberrant glycosignatures on cells (including endocytosis or initiation of opsonization or complement activation) and of apoptotic/necrotic cells (glycans or peptide motifs) | Collectins, C-type macrophage and dendritic cell lectins, CR3 (CD11b/CD18, Mac-1 antigen), α/Θ-defensins, ficolins, galectins, pentraxins (CRP, limulin), RegIIIγ (HIP/PAP), siglecs, tachylectins |
| Targeting of enzymatic activity in multimodular proteins | Acrosin, |
| Bridging of molecules | Cerebellar soluble lectin, cytokines (e.g. IL-2s–IL-2R and CD3 of TCR), galectins |
| Induction or suppression of effector release (H2O2, cytokines etc.) | Chitinase-like YKL-40, galectins, I-type lectins (e.g. CD33 (siglec-3), siglecs-7 and -9), selectins and other C-type lectins such as CD23, BDCA2 and dectin-1, Toll-like receptor 4 |
| Alteration of enzymatic activities in modular proteins/receptor endocytosis via lattice formation | Mannan-binding lectin (acting on meprins); galectins |
| Cell growth control, induction of apoptosis/anoikis and axonal regeneration | Amphoterin and other heparin-binding proteins, cerebellar soluble lectin, chitinase-like lectins, C-type lectins, galectins, hyaluronic acid-binding proteins, siglecs (e.g. CD22 and CD33) |
| Cell migration and routing | Galectins, hyaluronic acid-binding proteins (CD44, hyalectans/lecticans, RHAMMt), I-type lectins, selectins and other C-type lectins |
| Cell–cell interactions | Galectins, gliolectin, I-type lectins (e.g. siglecs, N-CAMu, P0 or L1), selectins and other C-type lectins such as DC-SIGN or macrophage mannose receptor |
| Cell–matrix interactions | Calreticulin, discoidin I, galectins, heparin- and hyaluronic acid-binding lectins including hyalectans/lecticans |
| Matrix network assembly | Galectins (e.g. galectin-3/hensin), non-integrin 67 kDa elastin/laminin-binding protein, proteoglycan core proteins (C-type CRD and G1 domain of hyalectans/lecticans) |
aadapted from [42], with permission, and extended.
bSkp-1-Cul1-F-box protein complex.
cER degradation enhancing α-mannosidase-like protein.
dmannose-6-phosphate receptor homology.
eXTP3-transactivated gene B precursor.
fosteosarcoma 9.
gER-Golgi intermediate compartment protein (lectin) (MW: 53 kDa).
hvesicular-integral (membrane) protein (lectin) (MW: 36 kDa).
iERGIC-53-like protein.
jVIP-36-like protein.
kcarbohydrate recognition domain.
ldendritic cell-specific ICAM-3-grabbing nonintegrin.
mhyaluronan receptor for endocytosis.
nlipooligosaccharide.
olipopolysaccharide.
pcomplement receptor type 3.
qmember of regenerating (reg) gene family of secreted proteins.
rUDP-GalNAc:polypeptide N-acetylgalactosaminyltransferases.
sinterleukin-2.
treceptor for hyaluronan-mediated motility.
uneural cell adhesion molecule.
The four classes of reagents used in glycocyto- and histochemical analysis
| Detect certain aspects of glycosylation | Plant lectin/carbohydrate-specific antibody | Monitoring the presence of β1,6-branching in N-glycans or of sialylated Lewis epitopes |
| Detect accessible sites binding a distinct carbohydrate epitope | Neoglycoconjugate | Detecting binding sites for sialylated Lewis epitopes in colon cancer |
| Detect distinct lectins | Antibody specific for endogenous lectin | Performing immunohistochemical galectin fingerprinting in colon cancer (with prognostic relevance for galectins) |
| Detect accessible ligands (glycan/peptide) for an endogenous lectin | Tissue lectin | Delineating prognostic relevance for galectin-3 binding in head and neck cancer sections |
From [73], with permission.