Literature DB >> 24443672

RECONSTRUCTION OF THE HUMAN HIPPOCAMPUS IN 3D FROM HISTOLOGY AND HIGH-RESOLUTION EX-VIVO MRI.

Daniel H Adler1, Alex Yang Liu1, John Pluta1, Salmon Kadivar1, Sylvia Orozco1, Hongzhi Wang1, James C Gee1, Brian B Avants1, Paul A Yushkevich1.   

Abstract

In this paper, we present methods for the reconstruction of 3D histological volumes of the human hippocampal formation from histology slices. Inter-slice alignment is guided by a graph-theoretic approach that minimizes the impact of badly distorted slices. The reconstruction is refined by iterative affine and deformable co-registration with a high-resolution MRI of the postmortem tissue sample. We present an evaluation of reconstruction accuracy that is based on measures of similarity between boundaries drawn on both histology and MRI. Our methodology is currently being applied to an MRI atlas of the human hippocampal formation, in which atlas anatomical labels are derived from segmentation of reconstructed histology.

Entities:  

Keywords:  Hippocampus; histology; reconstruction; registration; segmentation

Year:  2012        PMID： 24443672      PMCID： PMC3892900          DOI： 10.1109/ISBI.2012.6235542

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN： 1945-7928


  9 in total

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Journal:  Phys Med Biol       Date:  2010-09-30       Impact factor: 3.609

2.  A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data.

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3.  Genome-wide atlas of gene expression in the adult mouse brain.

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Journal:  Nature       Date:  2006-12-06       Impact factor: 49.962

Review 4.  A pathophysiological framework of hippocampal dysfunction in ageing and disease.

Authors:  Scott A Small; Scott A Schobel; Richard B Buxton; Menno P Witter; Carol A Barnes
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5.  Cytoarchitecture of the human cerebral cortex: MR microscopy of excised specimens at 9.4 Tesla.

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6.  Large Deformation Diffeomorphic Metric Mapping Registration of Reconstructed 3D Histological Section Images and in vivo MR Images.

Authors:  Can Ceritoglu; Lei Wang; Lynn D Selemon; John G Csernansky; Michael I Miller; J Tilak Ratnanather
Journal:  Front Hum Neurosci       Date:  2010-05-28       Impact factor: 3.169

7.  Selective effect of age, Apo e4, and Alzheimer's disease on hippocampal subfields.

Authors:  Susanne G Mueller; Michael W Weiner
Journal:  Hippocampus       Date:  2009-06       Impact factor: 3.899

8.  A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T.

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Journal:  Neuroimage       Date:  2008-09-18       Impact factor: 6.556

9.  Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

Authors:  B B Avants; C L Epstein; M Grossman; J C Gee
Journal:  Med Image Anal       Date:  2007-06-23       Impact factor: 8.545
  9 in total
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1.  High-resolution In Vivo Manual Segmentation Protocol for Human Hippocampal Subfields Using 3T Magnetic Resonance Imaging.

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2.  Segmenting subregions of the human hippocampus on structural magnetic resonance image scans: An illustrated tutorial.

Authors:  Marshall A Dalton; Peter Zeidman; Daniel N Barry; Elaine Williams; Eleanor A Maguire
Journal:  Brain Neurosci Adv       Date:  2017-04-06

3.  Transformation diffusion reconstruction of three-dimensional histology volumes from two-dimensional image stacks.

Authors:  Ramón Casero; Urszula Siedlecka; Elizabeth S Jones; Lena Gruscheski; Matthew Gibb; Jürgen E Schneider; Peter Kohl; Vicente Grau
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4.  Hippocampal subfield pathologic burden in Lewy body diseases vs. Alzheimer's disease.

Authors:  D G Coughlin; R Ittyerah; C Peterson; J S Phillips; S Miller; K Rascovsky; D Weintraub; A D Siderowf; J E Duda; H I Hurtig; D A Wolk; C T McMillan; P A Yushkevich; M Grossman; E B Lee; J Q Trojanowski; D J Irwin
Journal:  Neuropathol Appl Neurobiol       Date:  2020-09-24       Impact factor: 8.090
  4 in total

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