Literature DB >> 24443378

PhyloJIVE: Integrating biodiversity data with the Tree of Life.

Garry Jolley-Rogers1, Temi Varghese, Paul Harvey, Nick dos Remedios, Joseph T Miller.   

Abstract

MOTIVATION: Rich collections of biodiversity information such as spatial distributions, species descriptions and trait data are now synthesized in publicly available online sources such as GBIF. Also phylogenetic knowledge now provides a sound understanding of the origin of organisms and their place in the tree of life. We demonstrate with PhyloJIVE that any phylogenetic tree can be linked to online biodiversity data in the browser. This evolutionary view of biodiversity data is demonstrated in a case study that suggests that this approach may be useful to scientists and non-experts users.

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Year:  2014        PMID: 24443378     DOI: 10.1093/bioinformatics/btu024

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

Review 1.  Biodiversity analysis in the digital era.

Authors:  John La Salle; Kristen J Williams; Craig Moritz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-09-05       Impact factor: 6.237

2.  Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.

Authors:  Andrew Bissett; Anna Fitzgerald; Thys Meintjes; Pauline M Mele; Frank Reith; Paul G Dennis; Martin F Breed; Belinda Brown; Mark V Brown; Joel Brugger; Margaret Byrne; Stefan Caddy-Retalic; Bernie Carmody; David J Coates; Carolina Correa; Belinda C Ferrari; Vadakattu V S R Gupta; Kelly Hamonts; Asha Haslem; Philip Hugenholtz; Mirko Karan; Jason Koval; Andrew J Lowe; Stuart Macdonald; Leanne McGrath; David Martin; Matt Morgan; Kristin I North; Chanyarat Paungfoo-Lonhienne; Elise Pendall; Lori Phillips; Rebecca Pirzl; Jeff R Powell; Mark A Ragan; Susanne Schmidt; Nicole Seymour; Ian Snape; John R Stephen; Matthew Stevens; Matt Tinning; Kristen Williams; Yun Kit Yeoh; Carla M Zammit; Andrew Young
Journal:  Gigascience       Date:  2016-05-18       Impact factor: 6.524

  2 in total

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