Literature DB >> 24441139

Competition between hydrogen and halogen bonding in the structures of 5,10-dihydroxy-5,10-dihydroboranthrenes.

Krzysztof Durka1, Sergiusz Luliński1, Katarzyna N Jarzembska2, Jaromir Smętek1, Janusz Serwatowski1, Krzysztof Woźniak2.   

Abstract

X-ray crystallographic and computational studies are reported for a series of boranthrenes, substituted with halogen atoms. The role of competitive hydrogen (O-H...O, O-H...F, C-H...O) and halogen (Cl...Cl, O...Br, F...F) bonding interactions on the molecular arrangement in the crystal structures is discussed. The structural analysis and calculations reveal that the O-H...O hydrogen bond in the unsubstituted derivative 5,10-dihydroxy-5,10-dihydroboranthrene, C12H10B2O2, is of moderate strength (ca -20 kJ mol(-1)), but weaker than that in the related thiophene derivative 4,8-dihydro-4,8-dihydroxy-p-diborino[2,3-b:5,6-b]dithiophene, C8H6B2O2S2 (ca -40 kJ mol(-1)). This is due to shielding of the OH group by the H atoms in the β-position of the boranthrene unit. Structural diversity derived from the flexibility of the O-H...O hydrogen bond facilitates the occurrence of other competitive interactions. For instance, in the 1,6-difluoro derivative, C12H8B2F2O2, the crystal packing results from O-H...F and F...F interactions. In turn, the 1,6-dibromo derivative, C12H8B2Br2O2, is dominated by Br...O halogen-bond interactions. In the most interesting case, the 1,6-dichloro derivative, C12H8B2Cl2O2, molecular disorder leads to the formation of two different supramolecular arrangements co-existing in the crystal lattice, one based on the Cl...Cl and C-H...O bonds, and the other stabilized by O-H...O hydrogen bonds. Calculations performed with density-functional theory (DFT; CRYSTAL09) and PIXEL methodologies show that both lattices are characterized by similar energy values (ca -100 kJ mol(-1)). A mixed arrangement with random or short-range-ordered molecular orientations can also be expected.

Entities:  

Keywords:  X-ray structural analysis; boranthrenes; energy calculations; halogen bonding; hydrogen bonding

Year:  2014        PMID: 24441139     DOI: 10.1107/S2052520613034987

Source DB:  PubMed          Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater        ISSN: 2052-5192


  1 in total

1.  Crystal structure of (2-benzyl-oxy-pyrimidin-5-yl)boronic acid.

Authors:  Krzysztof Durka; Tomasz Kliś; Janusz Serwatowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-15
  1 in total

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