Literature DB >> 24438257

The complete mitochondrial genome of Sebastes pachycephalus (Scorpaenidae, Scorpaeniformes) from the East Sea, Korea.

Yo-Soon Jang1,2, Kwang-Jae Park3, Ki-Yong Kim4, Sung Kim5,6.   

Abstract

Due to variations in coloration as well as other morphological features, the identification of Sebastes pachycephalus has been problematic. The complete mitogenome of S. pachycephalus was acquired using next-generation sequencing. The full genome was 16,415 base pairs (bp) in length, assembling two rRNAs, 22 tRNAs, one control region and 13 protein-coding genes (PCGs). The genome constitutes 27.9% A, 26.3% T, 17.2% G and 28.5% C, showing a slight AT bias (54.2%). All PCGs start with an ATG initial codon except COX1, which contains GTG. Most PCG stop codons were TAA, except for ND1 and ND3 (TAG) and Cytb (incomplete termination codon, T). All tRNAs showed the typical cloverleaf structure, except tRNA(Ser(AGY)), which lacks the DHU arm. The complete mitogenome of S. pachycephalus will help further identification and speciation analyses.

Entities:  

Keywords:  Mitochondrial genome; Sebastes pachycephalus; Sebastinae; rockfish

Mesh:

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Year:  2014        PMID: 24438257     DOI: 10.3109/19401736.2013.873904

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  3 in total

1.  Complete Mitochondrial Genome Sequences of Five Rockfishes (Perciformes: Sebastes).

Authors:  Michael W Sandel; Andres Aguilar; Vincent P Buonaccorsi; Jennifer Herstein; Oleg Evgrafov
Journal:  Mitochondrial DNA B Resour       Date:  2018-08-10       Impact factor: 0.658

2.  Complete mitochondrial genomes of two rockfish: Sebastes maliger and Sebastes norvegicus (Scorpaenidae, Scorpaeniformes).

Authors:  Jillian R Campbell; Peter C Searle; Andrea L Kokkonen; Dennis K Shiozawa; Mark C Belk; R Paul Evans
Journal:  Mitochondrial DNA B Resour       Date:  2022-09-07       Impact factor: 0.610

3.  Comparative analysis of the complete mitochondrial genomes of three rockfishes (Scorpaeniformes, Sebastiscus) and insights into the phylogenetic relationships of Sebastidae.

Authors:  Chenghao Jia; Xiumei Zhang; Shengyong Xu; Tianyan Yang; Takashi Yanagimoto; Tianxiang Gao
Journal:  Biosci Rep       Date:  2020-12-23       Impact factor: 3.840

  3 in total

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