Literature DB >> 24436691

Software-programmable continuous-flow multi-purpose lab-on-a-chip.

Ahmed M Amin1, Raviraj Thakur2, Seth Madren3, Han-Sheng Chuang4, Mithuna Thottethodi5, T N Vijaykumar6, Steven T Wereley7, Stephen C Jacobson8.   

Abstract

Current lab-on-a-chip (LoC) devices are assay-specific and are custom-built for each single experiment. Performing an experiment requires scientists or engineers to go through the time-consuming process of designing, fabricating, and testing a chip before conducting the actual experiment. This prolonged cycle can take months to complete, increasing effort and cost and reducing productivity. Similarly, minor modifications to an assay protocol re-incur the overheads of the design cycle. In this paper, we develop a multi-purpose, software-programmableLab-on-a-Chip (SPLoC), where the user simply writes or downloads a program for each experiment. We describe the components necessary to realize the SPLoC, which include a high-level programming language, an abstract instruction set, a runtime and control system, and a microfluidic device. We describe two key features of our high-level language compiler, and describe a novel variable-volume variable-ratio mixer. Finally, we demonstrate our SPLoC on four diverse, real-world assays.

Entities:  

Year:  2013        PMID: 24436691      PMCID: PMC3889662          DOI: 10.1007/s10404-013-1180-2

Source DB:  PubMed          Journal:  Microfluid Nanofluidics        ISSN: 1613-4982            Impact factor:   2.529


  12 in total

1.  Monolithic microfabricated valves and pumps by multilayer soft lithography.

Authors:  M A Unger; H P Chou; T Thorsen; A Scherer; S R Quake
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

2.  High-pressure microfluidic control in lab-on-a-chip devices using mobile polymer monoliths.

Authors:  Ernest F Hasselbrink; Timothy J Shepodd; Jason E Rehm
Journal:  Anal Chem       Date:  2002-10-01       Impact factor: 6.986

3.  A modular microfluidic architecture for integrated biochemical analysis.

Authors:  Kashan A Shaikh; Kee Suk Ryu; Edgar D Goluch; Jwa-Min Nam; Juewen Liu; C Shad Thaxton; Thomas N Chiesl; Annelise E Barron; Yi Lu; Chad A Mirkin; Chang Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-28       Impact factor: 11.205

4.  An integrated nanoliter DNA analysis device.

Authors:  M A Burns; B N Johnson; S N Brahmasandra; K Handique; J R Webster; M Krishnan; T S Sammarco; P M Man; D Jones; D Heldsinger; C H Mastrangelo; D T Burke
Journal:  Science       Date:  1998-10-16       Impact factor: 47.728

5.  A software-programmable microfluidic device for automated biology.

Authors:  Luis M Fidalgo; Sebastian J Maerkl
Journal:  Lab Chip       Date:  2011-03-17       Impact factor: 6.799

6.  Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane).

Authors:  D C Duffy; J C McDonald; O J Schueller; G M Whitesides
Journal:  Anal Chem       Date:  1998-12-01       Impact factor: 6.986

7.  Microchip device for performing enzyme assays.

Authors:  A G Hadd; D E Raymond; J W Halliwell; S C Jacobson; J M Ramsey
Journal:  Anal Chem       Date:  1997-09-01       Impact factor: 6.986

8.  Programmable nano-bio-chip sensors: analytical meets clinical.

Authors:  Jesse V Jokerst; James W Jacobson; Bryon D Bhagwandin; Pierre N Floriano; Nicolaos Christodoulides; John T McDevitt
Journal:  Anal Chem       Date:  2010-03-01       Impact factor: 6.986

9.  Kinetics and comparative reactivity of human class I and class IIb histone deacetylases.

Authors:  Brian E Schultz; Shawn Misialek; Jiansheng Wu; Jie Tang; Marion T Conn; Ram Tahilramani; Lance Wong
Journal:  Biochemistry       Date:  2004-08-31       Impact factor: 3.162

10.  A multi-purpose microfluidic perfusion system with combinatorial choice of inputs, mixtures, gradient patterns, and flow rates.

Authors:  Gregory A Cooksey; Christopher G Sip; Albert Folch
Journal:  Lab Chip       Date:  2008-11-07       Impact factor: 6.799

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  2 in total

1.  Programmable bio-nano-chip system: a flexible point-of-care platform for bioscience and clinical measurements.

Authors:  Michael P McRae; Glennon W Simmons; Jorge Wong; Basil Shadfan; Sanjiv Gopalkrishnan; Nicolaos Christodoulides; John T McDevitt
Journal:  Lab Chip       Date:  2015-08-26       Impact factor: 6.799

2.  Programmable, Pneumatically Actuated Microfluidic Device with an Integrated Nanochannel Array To Track Development of Individual Bacteria.

Authors:  Joshua D Baker; David T Kysela; Jinsheng Zhou; Seth M Madren; Andrew S Wilkens; Yves V Brun; Stephen C Jacobson
Journal:  Anal Chem       Date:  2016-07-05       Impact factor: 6.986

  2 in total

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