Literature DB >> 24432156

A mathematical model for dynamics of CD40 clustering.

Uddipan Sarma1, Prashant M Gade2, Bhaskar Saha1.   

Abstract

Ligand bound-receptors in a signalosome complex trigger signals to determine cellular functions. Upon ligand binding, the ligand-receptor complexes form clusters on cell membrane. Guided by the previous experimental reports on the cluster formation of CD40, a trans membrane receptor for CD40-ligand, we built a minimal model of the receptor cluster formation. In this model, we studied co-operative and non-co-operative clustering of a maximum of four CD40 molecules assuming a positive mediator of clustering such as cholesterol to be present in both cases. We observed that co-operative interactions between CD40 molecules resulted in more of the largest CD40 clusters than that observed with the non-co-operatively interacting CD40 molecules. We performed global sensitivity analysis on the model parameters and the analyses suggested that cholesterol influenced only the initial stage of the co-operatively clustering CD40 molecules but it affects both the initial and the final stages in case of the non-co-operatively clustering CD40 molecules. Robustness analyses revealed that in both co-operative and non-co-operative interactions, the higher order clusters beyond a critical size are more robust with respect to alterations in the environmental parameters including the cholesterol. Thus, the role of co-operative and non-co-operative interactions in environment-influenced receptor clustering is reported for the first time.

Entities:  

Keywords:  CD40; Cholesterol in receptor clustering; Clustering dynamics; Co-operativity in receptor clustering and robustness; Kinetic model for receptor clustering

Year:  2013        PMID: 24432156      PMCID: PMC3824818          DOI: 10.1007/s11693-013-9112-8

Source DB:  PubMed          Journal:  Syst Synth Biol        ISSN: 1872-5325


  12 in total

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Review 2.  Mobility of cell surface receptors: a re-evaluation.

Authors:  R J Cherry; P R Smith; I E Morrison; N Fernandez
Journal:  FEBS Lett       Date:  1998-06-23       Impact factor: 4.124

3.  Quantification of short term signaling by the epidermal growth factor receptor.

Authors:  B N Kholodenko; O V Demin; G Moehren; J B Hoek
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Review 4.  The CD40 antigen and its ligand.

Authors:  J Banchereau; F Bazan; D Blanchard; F Brière; J P Galizzi; C van Kooten; Y J Liu; F Rousset; S Saeland
Journal:  Annu Rev Immunol       Date:  1994       Impact factor: 28.527

5.  CD40 on human endothelial cells: inducibility by cytokines and functional regulation of adhesion molecule expression.

Authors:  K Karmann; C C Hughes; J Schechner; W C Fanslow; J S Pober
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7.  Cholesterol depletion associated with Leishmania major infection alters macrophage CD40 signalosome composition and effector function.

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9.  Signal processing in the TGF-beta superfamily ligand-receptor network.

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Journal:  PLoS Comput Biol       Date:  2006-01-27       Impact factor: 4.475

10.  Cholesterol controls the clustering of the glycophospholipid-anchored membrane receptor for 5-methyltetrahydrofolate.

Authors:  K G Rothberg; Y S Ying; B A Kamen; R G Anderson
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