Literature DB >> 24431515

Plant proteomics in India and Nepal: current status and challenges ahead.

Renu Deswal1, Ravi Gupta1, Vivek Dogra2, Raksha Singh3, Jasmeet Kaur Abat4, Abhijit Sarkar5, Yogesh Mishra6, Vandana Rai7, Yelam Sreenivasulu2, Ramesh Sundar Amalraj8, Manish Raorane9, Ram Prasad Chaudhary10, Ajay Kohli9, Ashok Prabhakar Giri11, Niranjan Chakraborty12, Sajad Majeed Zargar13, Vishwanath Prasad Agrawal14, Ganesh Kumar Agrawal14, Dominique Job15, Jenny Renaut16, Randeep Rakwal17.   

Abstract

Plant proteomics has made tremendous contributions in understanding the complex processes of plant biology. Here, its current status in India and Nepal is discussed. Gel-based proteomics is predominantly utilized on crops and non-crops to analyze majorly abiotic (49 %) and biotic (18 %) stress, development (11 %) and post-translational modifications (7 %). Rice is the most explored system (36 %) with major focus on abiotic mainly dehydration (36 %) stress. In spite of expensive proteomics setup and scarcity of trained workforce, output in form of publications is encouraging. To boost plant proteomics in India and Nepal, researchers have discussed ground level issues among themselves and with the International Plant Proteomics Organization (INPPO) to act in priority on concerns like food security. Active collaboration may help in translating this knowledge to fruitful applications.

Entities:  

Keywords:  Abiotic stress; Agriculture; Biotic stress; Food security; Plants; Proteomics

Year:  2013        PMID: 24431515      PMCID: PMC3781272          DOI: 10.1007/s12298-013-0198-y

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN: 0974-0430


  78 in total

1.  Proteomic analysis of thylakoid membranes.

Authors:  Venkateswarlu Yadavalli; Sreedhar Nellaepalli; Rajagopal Subramanyam
Journal:  Methods Mol Biol       Date:  2011

2.  Quantitative proteomics in plants: choices in abundance.

Authors:  Jay J Thelen; Scott C Peck
Journal:  Plant Cell       Date:  2007-11-30       Impact factor: 11.277

3.  Analysis of the grasspea proteome and identification of stress-responsive proteins upon exposure to high salinity, low temperature, and abscisic acid treatment.

Authors:  Arnab Chattopadhyay; Pratigya Subba; Aarti Pandey; Deepti Bhushan; Rajiv Kumar; Asis Datta; Subhra Chakraborty; Niranjan Chakraborty
Journal:  Phytochemistry       Date:  2011-02-24       Impact factor: 4.072

4.  Depletion of abundant plant RuBisCO protein using the protamine sulfate precipitation method.

Authors:  Yu Ji Kim; Hye Min Lee; Yiming Wang; Jingni Wu; Sang Gon Kim; Kyu Young Kang; Ki Hun Park; Yong Chul Kim; In Soo Choi; Ganesh Kumar Agrawal; Randeep Rakwal; Sun Tae Kim
Journal:  Proteomics       Date:  2013-06-06       Impact factor: 3.984

5.  Dehydration-responsive reversible and irreversible changes in the extracellular matrix: comparative proteomics of chickpea genotypes with contrasting tolerance.

Authors:  Deepti Bhushan; Dinesh Kumar Jaiswal; Doel Ray; Debarati Basu; Asis Datta; Subhra Chakraborty; Niranjan Chakraborty
Journal:  J Proteome Res       Date:  2011-03-16       Impact factor: 4.466

6.  Changes in the leaf proteome profile of Mentha arvensis in response to Alternaria alternata infection.

Authors:  Ragini Sinha; Sharmila Chattopadhyay
Journal:  J Proteomics       Date:  2010-11-23       Impact factor: 4.044

7.  A hydroponic rice seedling culture model system for investigating proteome of salt stress in rice leaf.

Authors:  Dea-Wook Kim; Randeep Rakwal; Ganesh Kumar Agrawal; Young-Ho Jung; Junko Shibato; Nam-Soo Jwa; Yumiko Iwahashi; Hitoshi Iwahashi; Du Hyun Kim; Ie-Sung Shim; Kenji Usui
Journal:  Electrophoresis       Date:  2005-12       Impact factor: 3.535

8.  Protein and lipid composition analysis of oil bodies from two Brassica napus cultivars.

Authors:  Vesna Katavic; Ganesh Kumar Agrawal; Martin Hajduch; Stefan L Harris; Jay J Thelen
Journal:  Proteomics       Date:  2006-08       Impact factor: 3.984

9.  Dehydration-responsive nuclear proteome of rice (Oryza sativa L.) illustrates protein network, novel regulators of cellular adaptation, and evolutionary perspective.

Authors:  Mani Kant Choudhary; Debarati Basu; Asis Datta; Niranjan Chakraborty; Subhra Chakraborty
Journal:  Mol Cell Proteomics       Date:  2009-03-25       Impact factor: 5.911

10.  Comparative analyses of nuclear proteome: extending its function.

Authors:  Kanika Narula; Asis Datta; Niranjan Chakraborty; Subhra Chakraborty
Journal:  Front Plant Sci       Date:  2013-04-26       Impact factor: 5.753

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  1 in total

1.  Differential Proteomic Analysis Using iTRAQ Reveals Alterations in Hull Development in Rice (Oryza sativa L.).

Authors:  Shuzhen Wang; Wenyue Chen; Wenfei Xiao; Changdeng Yang; Ya Xin; Jieren Qiu; Weimin Hu; Wu Ying; Yaping Fu; Jianxin Tong; Guocheng Hu; Zhongzhong Chen; Xianping Fang; Hong Yu; Wenguo Lai; Songlin Ruan; Huasheng Ma
Journal:  PLoS One       Date:  2015-07-31       Impact factor: 3.240

  1 in total

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