Literature DB >> 24429899

Metagenomic approaches to understanding phylogenetic diversity in quorum sensing.

Nobutada Kimura1.   

Abstract

Quorum sensing, a form of cell-cell communication among bacteria, allows bacteria to synchronize their behaviors at the population level in order to control behaviors such as luminescence, biofilm formation, signal turnover, pigment production, antibiotics production, swarming, and virulence. A better understanding of quorum-sensing systems will provide us with greater insight into the complex interaction mechanisms used widely in the Bacteria and even the Archaea domain in the environment. Metagenomics, the use of culture-independent sequencing to study the genomic material of microorganisms, has the potential to provide direct information about the quorum-sensing systems in uncultured bacteria. This article provides an overview of the current knowledge of quorum sensing focused on phylogenetic diversity, and presents examples of studies that have used metagenomic techniques. Future technologies potentially related to quorum-sensing systems are also discussed.

Entities:  

Keywords:  N-acyl-L-homoserine lactone; metagenomics; quorum quenching; quorum sensing; quorum-sensing inhibitor; quorum-sensing signal

Mesh:

Year:  2014        PMID: 24429899      PMCID: PMC3979871          DOI: 10.4161/viru.27850

Source DB:  PubMed          Journal:  Virulence        ISSN: 2150-5594            Impact factor:   5.882


  96 in total

1.  Exploring the unknown. The silent revolution of microbiology.

Authors:  E Kellenberger
Journal:  EMBO Rep       Date:  2001-01       Impact factor: 8.807

2.  Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products.

Authors:  Sophie Courtois; Carmela M Cappellano; Maria Ball; Francois-Xavier Francou; Philippe Normand; Gérard Helynck; Asuncion Martinez; Steven J Kolvek; Joern Hopke; Marcia S Osburne; Paul R August; Renaud Nalin; Michel Guérineau; Pascale Jeannin; Pascal Simonet; Jean-Luc Pernodet
Journal:  Appl Environ Microbiol       Date:  2003-01       Impact factor: 4.792

3.  Heterologous production of bisucaberin using a biosynthetic gene cluster cloned from a deep sea metagenome.

Authors:  Masaki J Fujita; Nobutada Kimura; Hisayoshi Yokose; Masami Otsuka
Journal:  Mol Biosyst       Date:  2011-11-03

4.  Acyl homoserine lactone-based quorum sensing in a methanogenic archaeon.

Authors:  Guishan Zhang; Fan Zhang; Gang Ding; Jie Li; Xiaopeng Guo; Jinxing Zhu; Liguang Zhou; Shichun Cai; Xiaoli Liu; Yuanming Luo; Guifeng Zhang; Wenyuan Shi; Xiuzhu Dong
Journal:  ISME J       Date:  2012-01-12       Impact factor: 10.302

5.  Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate.

Authors:  A Henne; R Daniel; R A Schmitz; G Gottschalk
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

6.  Structural basis and specificity of acyl-homoserine lactone signal production in bacterial quorum sensing.

Authors:  William T Watson; Timothy D Minogue; Dale L Val; Susanne Beck von Bodman; Mair E A Churchill
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

7.  N-acylhomoserine lactonase producing Rhodococcus spp. with different AHL-degrading activities.

Authors:  Sun-Yang Park; Byung-Joon Hwang; Min-Ho Shin; Jung-Ae Kim; Ha-Kun Kim; Jung-Kee Lee
Journal:  FEMS Microbiol Lett       Date:  2006-08       Impact factor: 2.742

8.  Diversity of N-acyl homoserine lactone-producing and -degrading bacteria in soil and tobacco rhizosphere.

Authors:  Cathy d'Angelo-Picard; Denis Faure; Isabelle Penot; Yves Dessaux
Journal:  Environ Microbiol       Date:  2005-11       Impact factor: 5.491

9.  A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases.

Authors:  Stéphane Uroz; Phil M Oger; Emilie Chapelle; Marie-Thérèse Adeline; Denis Faure; Yves Dessaux
Journal:  Appl Environ Microbiol       Date:  2008-01-11       Impact factor: 4.792

10.  The presence and role of bacterial quorum sensing in activated sludge.

Authors:  Grace Chong; Onder Kimyon; Scott A Rice; Staffan Kjelleberg; Mike Manefield
Journal:  Microb Biotechnol       Date:  2012-05-14       Impact factor: 5.813

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  13 in total

Review 1.  Potential Emergence of Multi-quorum Sensing Inhibitor Resistant (MQSIR) Bacteria.

Authors:  Shikha Koul; Jyotsana Prakash; Anjali Mishra; Vipin Chandra Kalia
Journal:  Indian J Microbiol       Date:  2015-11-04       Impact factor: 2.461

2.  Chemical Interrogation of LuxR-type Quorum Sensing Receptors Reveals New Insights into Receptor Selectivity and the Potential for Interspecies Bacterial Signaling.

Authors:  Joseph P Gerdt; Danielle M Wittenwyler; Joshua B Combs; Michelle E Boursier; Jacob W Brummond; He Xu; Helen E Blackwell
Journal:  ACS Chem Biol       Date:  2017-08-31       Impact factor: 5.100

Review 3.  Quorum sensing by farnesol revisited.

Authors:  Melanie Polke; Ilse D Jacobsen
Journal:  Curr Genet       Date:  2017-02-28       Impact factor: 3.886

Review 4.  Biotechnological applications of functional metagenomics in the food and pharmaceutical industries.

Authors:  Laura M Coughlan; Paul D Cotter; Colin Hill; Avelino Alvarez-Ordóñez
Journal:  Front Microbiol       Date:  2015-06-30       Impact factor: 5.640

5.  Quorum Sensing and the Use of Quorum Quenchers as Natural Biocides to Inhibit Sulfate-Reducing Bacteria.

Authors:  Giantommaso Scarascia; Tiannyu Wang; Pei-Ying Hong
Journal:  Antibiotics (Basel)       Date:  2016-12-15

6.  Characterization of diverse homoserine lactone synthases in Escherichia coli.

Authors:  René Daer; Cassandra M Barrett; Ernesto Luna Melendez; Jiaqi Wu; Stefan J Tekel; Jimmy Xu; Brady Dennison; Ryan Muller; Karmella A Haynes
Journal:  PLoS One       Date:  2018-08-23       Impact factor: 3.240

7.  Effect of the luxI/R gene on AHL-signaling molecules and QS regulatory mechanism in Hafnia alvei H4.

Authors:  Xue Li; Gongliang Zhang; Yaolei Zhu; Jingran Bi; Hongshun Hao; Hongman Hou
Journal:  AMB Express       Date:  2019-12-05       Impact factor: 3.298

Review 8.  Human microbiomes and their roles in dysbiosis, common diseases, and novel therapeutic approaches.

Authors:  José E Belizário; Mauro Napolitano
Journal:  Front Microbiol       Date:  2015-10-06       Impact factor: 5.640

9.  Metagenomics: unrestricted access to microbial communities.

Authors:  Elaine Allan
Journal:  Virulence       Date:  2014-02-12       Impact factor: 5.882

Review 10.  Recent Advances in the Mechanisms and Regulation of QS in Dairy Spoilage by Pseudomonas spp.

Authors:  Laura Quintieri; Leonardo Caputo; Milena Brasca; Francesca Fanelli
Journal:  Foods       Date:  2021-12-13
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