Literature DB >> 24427107

1-[2-(3-Meth-oxy-phen-yl)eth-yl]pyrroli-dine-2,5-dione.

Zeenat Fatima1, Jayaraman Selvakumar2, Thothadri Srinivasan1, Devadasan Velmurugan1.   

Abstract

In the title compound, C13H15NO3, the pyrrolidine ring makes a dihedral angle of 4.69 (9)° with the 3-meth-oxy-phenyl ring. In the crystal, hydrogen-bonded chains running along [101] are generated by connecting neighbouring mol-ecules via C-H⋯O hydrogen bonds. Parallel chains are linked by further C-H⋯O hydrogen bonds, forming a three-dimensional structure.

Entities:  

Year:  2013        PMID: 24427107      PMCID: PMC3884377          DOI: 10.1107/S1600536813023751

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bioactivity of pyrrolidine-2,5-dione derivatives, see: Obniska et al. (2012 ▶); Ha et al. (2011 ▶); Kaminski et al. (2011 ▶). For related structures, see: Khorasani & Fernandes (2012 ▶); Mayes et al. (2008 ▶).

Experimental

Crystal data

C13H15NO3 M = 233.26 Monoclinic, a = 12.8719 (9) Å b = 12.5878 (8) Å c = 7.4523 (5) Å β = 90.831 (3)° V = 1207.36 (14) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.40 × 0.35 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.964, T max = 0.982 5692 measured reflections 2615 independent reflections 2328 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.097 S = 1.02 2615 reflections 156 parameters 2 restraints H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813023751/su2640sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813023751/su2640Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813023751/su2640Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15NO3F(000) = 496
Mr = 233.26Dx = 1.283 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 2615 reflections
a = 12.8719 (9) Åθ = 2.3–28.4°
b = 12.5878 (8) ŵ = 0.09 mm1
c = 7.4523 (5) ÅT = 293 K
β = 90.831 (3)°Block, colourless
V = 1207.36 (14) Å30.40 × 0.35 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer2615 independent reflections
Radiation source: fine-focus sealed tube2328 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω and φ scansθmax = 28.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −17→17
Tmin = 0.964, Tmax = 0.982k = −15→16
5692 measured reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.097w = 1/[σ2(Fo2) + (0.0544P)2 + 0.1677P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2615 reflectionsΔρmax = 0.12 e Å3
156 parametersΔρmin = −0.16 e Å3
2 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0149 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.95763 (19)0.43725 (18)1.0655 (3)0.0832 (6)
H1A0.98060.44940.94520.125*
H1B1.00430.47161.14870.125*
H1C0.88900.46571.07890.125*
C20.90109 (11)0.26275 (13)0.9852 (2)0.0485 (3)
C30.91325 (14)0.15484 (15)1.0131 (2)0.0633 (4)
H30.95820.13001.10250.076*
C40.85800 (17)0.08476 (14)0.9071 (3)0.0695 (5)
H40.86520.01210.92610.083*
C50.79213 (14)0.12096 (13)0.7730 (2)0.0609 (4)
H50.75520.07260.70260.073*
C60.78069 (11)0.22844 (13)0.74273 (18)0.0472 (3)
C70.83541 (11)0.29992 (12)0.85029 (19)0.0450 (3)
H70.82800.37260.83170.054*
C80.70939 (12)0.26805 (15)0.5942 (2)0.0564 (4)
H8A0.68930.34080.61930.068*
H8B0.64680.22510.59070.068*
C90.76102 (13)0.26346 (15)0.4132 (2)0.0565 (4)
H9A0.81610.31590.40940.068*
H9B0.79200.19390.39720.068*
C100.63151 (13)0.20320 (14)0.1850 (2)0.0573 (4)
C110.56115 (15)0.25110 (19)0.0462 (3)0.0737 (6)
H11A0.48910.23520.07120.088*
H11B0.57740.2247−0.07240.088*
C120.58151 (16)0.36961 (19)0.0592 (3)0.0777 (6)
H12A0.60660.3969−0.05400.093*
H12B0.51850.40730.08960.093*
C130.66250 (15)0.38270 (13)0.2046 (2)0.0609 (4)
N10.68700 (9)0.28356 (10)0.26754 (15)0.0475 (3)
O10.95629 (10)0.32628 (11)1.10049 (17)0.0690 (3)
O20.70187 (17)0.46337 (11)0.2584 (2)0.0967 (5)
O30.64082 (15)0.11124 (11)0.2245 (2)0.0906 (5)
U11U22U33U12U13U23
C10.0866 (14)0.0787 (13)0.0843 (14)−0.0200 (11)−0.0031 (11)−0.0264 (11)
C20.0412 (7)0.0623 (8)0.0421 (7)0.0004 (7)0.0000 (6)−0.0038 (7)
C30.0629 (10)0.0683 (10)0.0585 (10)0.0098 (8)−0.0075 (8)0.0138 (8)
C40.0825 (12)0.0484 (9)0.0773 (12)0.0001 (8)−0.0032 (10)0.0119 (8)
C50.0636 (10)0.0534 (9)0.0658 (11)−0.0099 (7)−0.0003 (8)−0.0074 (7)
C60.0405 (7)0.0586 (8)0.0425 (7)−0.0008 (6)0.0019 (6)−0.0018 (6)
C70.0429 (7)0.0486 (7)0.0437 (7)0.0016 (6)0.0014 (6)−0.0002 (6)
C80.0444 (7)0.0769 (10)0.0478 (8)0.0049 (7)−0.0064 (6)−0.0044 (8)
C90.0434 (7)0.0776 (11)0.0483 (8)0.0044 (7)−0.0084 (6)0.0034 (8)
C100.0570 (9)0.0649 (11)0.0502 (8)−0.0133 (7)0.0058 (7)−0.0053 (7)
C110.0508 (9)0.1229 (19)0.0473 (8)−0.0130 (10)−0.0052 (7)0.0007 (10)
C120.0687 (12)0.1047 (16)0.0596 (10)0.0264 (11)0.0000 (9)0.0204 (10)
C130.0717 (11)0.0584 (9)0.0529 (10)0.0049 (8)0.0093 (8)0.0062 (7)
N10.0448 (6)0.0538 (7)0.0439 (7)−0.0009 (5)−0.0041 (5)−0.0004 (5)
O10.0654 (7)0.0838 (9)0.0573 (7)−0.0055 (6)−0.0185 (5)−0.0104 (6)
O20.1454 (15)0.0532 (7)0.0917 (10)−0.0170 (9)0.0081 (10)−0.0025 (7)
O30.1184 (13)0.0569 (8)0.0962 (12)−0.0184 (7)−0.0033 (10)−0.0054 (7)
C1—O11.421 (3)C8—H8A0.9700
C1—H1A0.9600C8—H8B0.9700
C1—H1B0.9600C9—N11.4562 (19)
C1—H1C0.9600C9—H9A0.9700
C2—O11.3654 (19)C9—H9B0.9700
C2—C31.383 (2)C10—O31.200 (2)
C2—C71.386 (2)C10—N11.378 (2)
C3—C41.376 (3)C10—C111.492 (3)
C3—H30.9300C11—C121.517 (3)
C4—C51.379 (3)C11—H11A0.9700
C4—H40.9300C11—H11B0.9700
C5—C61.379 (2)C12—C131.502 (3)
C5—H50.9300C12—H12A0.9700
C6—C71.390 (2)C12—H12B0.9700
C6—C81.512 (2)C13—O21.201 (2)
C7—H70.9300C13—N11.368 (2)
C8—C91.513 (2)
O1—C1—H1A109.5H8A—C8—H8B107.9
O1—C1—H1B109.5N1—C9—C8111.51 (13)
H1A—C1—H1B109.5N1—C9—H9A109.3
O1—C1—H1C109.5C8—C9—H9A109.3
H1A—C1—H1C109.5N1—C9—H9B109.3
H1B—C1—H1C109.5C8—C9—H9B109.3
O1—C2—C3115.10 (14)H9A—C9—H9B108.0
O1—C2—C7124.41 (14)O3—C10—N1123.31 (18)
C3—C2—C7120.48 (14)O3—C10—C11128.13 (18)
C4—C3—C2119.16 (15)N1—C10—C11108.56 (15)
C4—C3—H3120.4C10—C11—C12104.51 (15)
C2—C3—H3120.4C10—C11—H11A110.8
C3—C4—C5120.78 (16)C12—C11—H11A110.9
C3—C4—H4119.6C10—C11—H11B110.8
C5—C4—H4119.6C12—C11—H11B110.9
C4—C5—C6120.39 (16)H11A—C11—H11B108.9
C4—C5—H5119.8C13—C12—C11105.73 (15)
C6—C5—H5119.8C13—C12—H12A110.6
C5—C6—C7119.25 (14)C11—C12—H12A110.6
C5—C6—C8120.36 (14)C13—C12—H12B110.6
C7—C6—C8120.39 (15)C11—C12—H12B110.6
C2—C7—C6119.91 (14)H12A—C12—H12B108.7
C2—C7—H7120.0O2—C13—N1124.25 (18)
C6—C7—H7120.0O2—C13—C12128.20 (19)
C6—C8—C9111.72 (12)N1—C13—C12107.54 (16)
C6—C8—H8A109.3C13—N1—C10113.65 (14)
C9—C8—H8A109.3C13—N1—C9123.99 (15)
C6—C8—H8B109.3C10—N1—C9122.31 (15)
C9—C8—H8B109.3C2—O1—C1117.90 (14)
O1—C2—C3—C4177.92 (17)C10—C11—C12—C130.1 (2)
C7—C2—C3—C4−1.1 (3)C11—C12—C13—O2179.5 (2)
C2—C3—C4—C50.8 (3)C11—C12—C13—N10.5 (2)
C3—C4—C5—C60.1 (3)O2—C13—N1—C10−179.95 (18)
C4—C5—C6—C7−0.7 (3)C12—C13—N1—C10−0.94 (19)
C4—C5—C6—C8179.27 (16)O2—C13—N1—C92.7 (3)
O1—C2—C7—C6−178.43 (15)C12—C13—N1—C9−178.33 (15)
C3—C2—C7—C60.4 (2)O3—C10—N1—C13−178.52 (19)
C5—C6—C7—C20.5 (2)C11—C10—N1—C131.00 (19)
C8—C6—C7—C2−179.55 (14)O3—C10—N1—C9−1.1 (2)
C5—C6—C8—C9−80.96 (19)C11—C10—N1—C9178.43 (16)
C7—C6—C8—C999.05 (18)C8—C9—N1—C1387.3 (2)
C6—C8—C9—N1169.92 (15)C8—C9—N1—C10−89.88 (19)
O3—C10—C11—C12178.89 (19)C3—C2—O1—C1172.27 (18)
N1—C10—C11—C12−0.6 (2)C7—C2—O1—C1−8.8 (2)
D—H···AD—HH···AD···AD—H···A
C1—H1B···O3i0.962.543.418 (3)151
C8—H8B···O1ii0.972.543.469 (2)161
C12—H12A···O2iii0.972.573.456 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1B⋯O3i 0.962.543.418 (3)151
C8—H8B⋯O1ii 0.972.543.469 (2)161
C12—H12A⋯O2iii 0.972.573.456 (3)152

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and anticonvulsant activity of new N-Mannich bases derived from 3-(2-fluorophenyl)- and 3-(2-bromophenyl)-pyrrolidine-2,5-diones. Part II.

Authors:  Jolanta Obniska; Sabina Rzepka; Krzysztof Kamiński
Journal:  Bioorg Med Chem       Date:  2012-05-23       Impact factor: 3.641

3.  Synthesis and anticonvulsant activity of new 1-[2-oxo-2-(4-phenylpiperazin-1-yl)ethyl]pyrrolidine-2,5-diones.

Authors:  Krzysztof Kamiński; Sabina Rzepka; Jolanta Obniska
Journal:  Bioorg Med Chem Lett       Date:  2011-08-06       Impact factor: 2.823

4.  4-Chloro-3-fluoro-2-methyl-aniline-pyrrolidine-2,5-dione (1/1).

Authors:  Benjamin A Mayes; Patrick McGarry; Adel Moussa; David J Watkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28

5.  1-(Anthracen-1-yl)pyrrolidine-2,5-dione.

Authors:  Sanaz Khorasani; Manuel A Fernandes
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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