Literature DB >> 24427104

6-Amino-2-(pivaloyl-amino)-pyridinium benzoate.

Lilianna Chęcińska1, Borys Ośmiałowski2, Arto Valkonen3.   

Abstract

In the crystal structure of the title salt, C10H16N3O(+)·C7H5O2 (-), the cations and anions are linked to each other via N-H⋯O hydrogen bonds, forming infinite chains running along [010]. The crystal structure also features C-H⋯O and π-π stacking inter-actions, which assemble the chains into supra-molecular layers parallel to (100). The π-π stacking inter-actions are observed between the pyridine rings of inversion-related cations with a centroid-centroid distance of 3.867 (2) Å.

Entities:  

Year:  2013        PMID: 24427104      PMCID: PMC3884507          DOI: 10.1107/S1600536813023787

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For co-crystallization of pharmaceuticals, see: Vishweshwar et al. (2006 ▶); Lemmerer (2012 ▶). For the crystal structures of related compounds, see: Ośmiałowski et al. (2010b ▶); Aakeröy et al. (2006 ▶, 2010 ▶). For the role of steric effects in hydrogen-bonded compounds, see Ośmiałowski et al. (2012a ▶,b ▶, 2010a ▶,b ▶). For the synthesis of 2-pivaloyl­amino-6-amino­pyridine, see: Ośmiałowski et al. (2010a ▶).

Experimental

Crystal data

C10H16N3O+·C7H5O2 M = 315.37 Monoclinic, a = 15.1438 (4) Å b = 5.7099 (2) Å c = 18.7388 (6) Å β = 91.967 (2)° V = 1619.38 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 123 K 0.13 × 0.10 × 0.08 mm

Data collection

Bruker–Nonius KappaCCD diffractometer with APEXII detector Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.988, T max = 0.993 10993 measured reflections 3724 independent reflections 2054 reflections with I > 2σ(I) R int = 0.094

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.141 S = 1.00 3724 reflections 220 parameters 4 restraints H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.28 e Å−3 Data collection: COLLECT (Bruker, 2008 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL2013 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813023787/fy2103sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813023787/fy2103Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813023787/fy2103Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H16N3O+·C7H5O2F(000) = 672
Mr = 315.37Dx = 1.293 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 15.1438 (4) ÅCell parameters from 4257 reflections
b = 5.7099 (2) Åθ = 0.4–28.3°
c = 18.7388 (6) ŵ = 0.09 mm1
β = 91.967 (2)°T = 123 K
V = 1619.38 (9) Å3Block, colourless
Z = 40.13 × 0.10 × 0.08 mm
Bruker–Nonius KappaCCD diffractometer with APEXII detector3724 independent reflections
Radiation source: fine-focus sealed tube2054 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.094
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 2.5°
φ and ω scansh = −19→18
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)k = −7→7
Tmin = 0.988, Tmax = 0.993l = −24→20
10993 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0496P)2] where P = (Fo2 + 2Fc2)/3
3724 reflections(Δ/σ)max < 0.001
220 parametersΔρmax = 0.24 e Å3
4 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O80.69413 (12)0.1535 (3)0.54656 (10)0.0370 (5)
N10.57982 (12)0.6015 (4)0.39112 (11)0.0205 (5)
H10.6221 (14)0.710 (4)0.3842 (13)0.025*
N60.48943 (14)0.7758 (4)0.30603 (12)0.0278 (5)
H6A0.5311 (15)0.882 (4)0.2960 (14)0.033*
H6B0.4404 (14)0.774 (4)0.2764 (13)0.033*
N70.68521 (13)0.4637 (4)0.47095 (11)0.0231 (5)
H70.7141 (15)0.580 (4)0.4546 (13)0.028*
C20.60154 (15)0.4307 (4)0.43895 (13)0.0223 (6)
C30.54405 (15)0.2505 (4)0.45137 (14)0.0249 (6)
H30.55820.13070.48500.030*
C40.46378 (16)0.2513 (4)0.41222 (14)0.0261 (6)
H40.42250.12950.42000.031*
C50.44278 (15)0.4204 (4)0.36334 (13)0.0227 (6)
H50.38810.41490.33690.027*
C60.50276 (15)0.6023 (4)0.35252 (13)0.0209 (6)
C80.72715 (16)0.3289 (4)0.52242 (14)0.0234 (6)
C90.81731 (15)0.4228 (4)0.54969 (13)0.0219 (6)
C100.79992 (16)0.5515 (5)0.61949 (14)0.0293 (6)
H10A0.77180.44430.65260.044*
H10B0.76080.68520.60960.044*
H10C0.85600.60720.64090.044*
C110.87823 (17)0.2125 (4)0.56515 (16)0.0326 (7)
H11A0.88960.13080.52040.049*
H11B0.84970.10490.59800.049*
H11C0.93420.26750.58690.049*
C120.86140 (15)0.5877 (5)0.49737 (14)0.0263 (6)
H12A0.87230.50370.45290.040*
H12B0.91760.64360.51850.040*
H12C0.82250.72160.48710.040*
O13A0.71169 (10)−0.1201 (3)0.37777 (10)0.0287 (5)
O13B0.64016 (11)0.0950 (3)0.29481 (10)0.0289 (5)
C130.70775 (15)0.0432 (4)0.33191 (13)0.0215 (6)
C140.79105 (15)0.1829 (4)0.32285 (13)0.0203 (6)
C150.87128 (15)0.0994 (4)0.35068 (13)0.0220 (6)
H150.8731−0.04360.37660.026*
C160.94848 (16)0.2232 (4)0.34092 (14)0.0255 (6)
H161.00310.16490.36000.031*
C170.94615 (16)0.4311 (4)0.30351 (14)0.0271 (6)
H170.99920.51550.29660.033*
C180.86638 (16)0.5174 (5)0.27596 (14)0.0279 (6)
H180.86470.66210.25090.033*
C190.78894 (16)0.3920 (4)0.28499 (13)0.0245 (6)
H190.73450.44940.26520.029*
U11U22U33U12U13U23
O80.0319 (11)0.0331 (11)0.0450 (13)−0.0155 (8)−0.0117 (9)0.0167 (10)
N10.0153 (11)0.0213 (11)0.0248 (12)−0.0069 (8)0.0000 (8)0.0002 (9)
N60.0206 (12)0.0284 (13)0.0339 (14)−0.0070 (9)−0.0076 (10)0.0059 (11)
N70.0175 (11)0.0242 (12)0.0275 (13)−0.0068 (9)−0.0028 (9)0.0046 (10)
C20.0197 (13)0.0264 (14)0.0208 (14)−0.0036 (10)0.0006 (10)−0.0012 (11)
C30.0208 (13)0.0273 (15)0.0266 (15)−0.0069 (10)0.0002 (11)0.0067 (11)
C40.0202 (14)0.0284 (14)0.0297 (16)−0.0106 (11)0.0016 (11)−0.0020 (12)
C50.0166 (12)0.0281 (14)0.0234 (14)−0.0049 (10)−0.0005 (10)−0.0004 (11)
C60.0165 (12)0.0254 (14)0.0210 (14)−0.0004 (10)0.0029 (10)−0.0029 (11)
C80.0235 (13)0.0221 (14)0.0246 (15)−0.0043 (11)−0.0006 (11)0.0012 (11)
C90.0172 (12)0.0227 (13)0.0255 (14)−0.0018 (10)−0.0039 (10)−0.0019 (11)
C100.0215 (13)0.0354 (16)0.0309 (15)−0.0046 (11)−0.0012 (11)−0.0032 (13)
C110.0264 (15)0.0257 (16)0.0449 (19)0.0005 (11)−0.0076 (12)0.0017 (13)
C120.0171 (13)0.0323 (15)0.0295 (15)−0.0046 (11)−0.0007 (10)−0.0001 (12)
O13A0.0198 (9)0.0276 (10)0.0384 (12)−0.0058 (7)−0.0032 (8)0.0102 (9)
O13B0.0199 (9)0.0326 (11)0.0335 (11)−0.0030 (7)−0.0069 (8)0.0078 (9)
C130.0201 (13)0.0225 (14)0.0220 (14)−0.0029 (10)0.0016 (10)−0.0010 (12)
C140.0186 (13)0.0227 (14)0.0197 (14)−0.0027 (10)0.0022 (10)−0.0021 (11)
C150.0214 (13)0.0219 (13)0.0227 (14)−0.0017 (10)0.0019 (10)0.0010 (11)
C160.0192 (13)0.0288 (15)0.0287 (15)−0.0016 (10)0.0012 (10)−0.0017 (12)
C170.0251 (14)0.0302 (15)0.0264 (15)−0.0118 (11)0.0062 (11)−0.0010 (12)
C180.0329 (15)0.0231 (14)0.0278 (15)−0.0058 (11)0.0025 (12)0.0051 (12)
C190.0264 (14)0.0230 (14)0.0242 (14)−0.0012 (11)−0.0008 (11)0.0010 (12)
O8—C81.214 (3)C10—H10B0.9800
N1—C61.352 (3)C10—H10C0.9800
N1—C21.358 (3)C11—H11A0.9800
N1—H10.905 (16)C11—H11B0.9800
N6—C61.330 (3)C11—H11C0.9800
N6—H6A0.899 (17)C12—H12A0.9800
N6—H6B0.913 (16)C12—H12B0.9800
N7—C81.373 (3)C12—H12C0.9800
N7—C21.396 (3)O13A—C131.268 (3)
N7—H70.859 (17)O13B—C131.253 (3)
C2—C31.373 (3)C13—C141.507 (3)
C3—C41.398 (3)C14—C191.389 (3)
C3—H30.9500C14—C151.390 (3)
C4—C51.361 (3)C15—C161.384 (3)
C4—H40.9500C15—H150.9500
C5—C61.400 (3)C16—C171.379 (4)
C5—H50.9500C16—H160.9500
C8—C91.538 (3)C17—C181.388 (4)
C9—C121.529 (3)C17—H170.9500
C9—C101.531 (3)C18—C191.389 (3)
C9—C111.536 (3)C18—H180.9500
C10—H10A0.9800C19—H190.9500
C6—N1—C2122.7 (2)C9—C10—H10C109.5
C6—N1—H1121.5 (16)H10A—C10—H10C109.5
C2—N1—H1115.6 (16)H10B—C10—H10C109.5
C6—N6—H6A123.2 (17)C9—C11—H11A109.5
C6—N6—H6B119.4 (17)C9—C11—H11B109.5
H6A—N6—H6B116 (2)H11A—C11—H11B109.5
C8—N7—C2128.1 (2)C9—C11—H11C109.5
C8—N7—H7117.2 (17)H11A—C11—H11C109.5
C2—N7—H7114.7 (17)H11B—C11—H11C109.5
N1—C2—C3120.7 (2)C9—C12—H12A109.5
N1—C2—N7112.5 (2)C9—C12—H12B109.5
C3—C2—N7126.9 (2)H12A—C12—H12B109.5
C2—C3—C4117.0 (2)C9—C12—H12C109.5
C2—C3—H3121.5H12A—C12—H12C109.5
C4—C3—H3121.5H12B—C12—H12C109.5
C5—C4—C3122.3 (2)O13B—C13—O13A124.6 (2)
C5—C4—H4118.9O13B—C13—C14118.9 (2)
C3—C4—H4118.9O13A—C13—C14116.5 (2)
C4—C5—C6119.1 (2)C19—C14—C15119.4 (2)
C4—C5—H5120.4C19—C14—C13120.5 (2)
C6—C5—H5120.4C15—C14—C13120.0 (2)
N6—C6—N1117.5 (2)C16—C15—C14120.4 (2)
N6—C6—C5124.3 (2)C16—C15—H15119.8
N1—C6—C5118.2 (2)C14—C15—H15119.8
O8—C8—N7122.5 (2)C17—C16—C15120.0 (2)
O8—C8—C9122.4 (2)C17—C16—H16120.0
N7—C8—C9115.0 (2)C15—C16—H16120.0
C12—C9—C10110.1 (2)C16—C17—C18120.1 (2)
C12—C9—C11109.3 (2)C16—C17—H17119.9
C10—C9—C11109.5 (2)C18—C17—H17119.9
C12—C9—C8113.8 (2)C17—C18—C19120.0 (2)
C10—C9—C8105.9 (2)C17—C18—H18120.0
C11—C9—C8108.1 (2)C19—C18—H18120.0
C9—C10—H10A109.5C14—C19—C18120.0 (2)
C9—C10—H10B109.5C14—C19—H19120.0
H10A—C10—H10B109.5C18—C19—H19120.0
C6—N1—C2—C3−1.4 (4)O8—C8—C9—C10−79.0 (3)
C6—N1—C2—N7178.4 (2)N7—C8—C9—C1098.3 (3)
C8—N7—C2—N1178.5 (2)O8—C8—C9—C1138.3 (3)
C8—N7—C2—C3−1.8 (4)N7—C8—C9—C11−144.3 (2)
N1—C2—C3—C40.7 (4)O13B—C13—C14—C1912.4 (4)
N7—C2—C3—C4−179.1 (2)O13A—C13—C14—C19−167.2 (2)
C2—C3—C4—C50.6 (4)O13B—C13—C14—C15−165.7 (2)
C3—C4—C5—C6−1.1 (4)O13A—C13—C14—C1514.7 (3)
C2—N1—C6—N6−178.5 (2)C19—C14—C15—C160.1 (4)
C2—N1—C6—C50.8 (4)C13—C14—C15—C16178.2 (2)
C4—C5—C6—N6179.6 (3)C14—C15—C16—C170.1 (4)
C4—C5—C6—N10.4 (4)C15—C16—C17—C180.4 (4)
C2—N7—C8—O81.0 (4)C16—C17—C18—C19−1.1 (4)
C2—N7—C8—C9−176.4 (2)C15—C14—C19—C18−0.8 (4)
O8—C8—C9—C12159.9 (2)C13—C14—C19—C18−178.9 (2)
N7—C8—C9—C12−22.8 (3)C17—C18—C19—C141.3 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O13Ai0.91 (2)1.67 (2)2.571 (2)170 (2)
N6—H6A···O13Bi0.90 (2)2.05 (2)2.934 (3)167 (2)
N6—H6B···O13Bii0.91 (2)2.05 (2)2.869 (3)149 (2)
N7—H7···O13Ai0.86 (2)2.24 (2)2.984 (3)146 (2)
C4—H4···O8iii0.952.493.433 (3)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O13A i 0.91 (2)1.67 (2)2.571 (2)170 (2)
N6—H6A⋯O13B i 0.90 (2)2.05 (2)2.934 (3)167 (2)
N6—H6B⋯O13B ii 0.91 (2)2.05 (2)2.869 (3)149 (2)
N7—H7⋯O13A i 0.86 (2)2.24 (2)2.984 (3)146 (2)
C4—H4⋯O8iii 0.952.493.433 (3)172

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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4.  2-Acylamino- and 2,4-bis(acylamino)pyrimidines as supramolecular synthons analyzed by multiple noncovalent interactions. DFT, X-ray diffraction, and NMR spectral studies.

Authors:  Borys Ośmiałowski; Erkki Kolehmainen; Satu Ikonen; Arto Valkonen; Adam Kwiatkowski; Izabela Grela; Esa Haapaniemi
Journal:  J Org Chem       Date:  2012-10-11       Impact factor: 4.354

Review 5.  Pharmaceutical co-crystals.

Authors:  Peddy Vishweshwar; Jennifer A McMahon; Joanna A Bis; Michael J Zaworotko
Journal:  J Pharm Sci       Date:  2006-03       Impact factor: 3.534

6.  Self-organization of 2-acylaminopyridines in the solid state and in solution.

Authors:  Borys Ośmiałowski; Erkki Kolehmainen; Robert Dobosz; Ryszard Gawinecki; Reijo Kauppinen; Arto Valkonen; Juha Koivukorpi; Kari Rissanen
Journal:  J Phys Chem A       Date:  2010-09-30       Impact factor: 2.781

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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