Literature DB >> 24427077

3-Benzyl-1-{[3-(4-chloro-phen-yl)isoxazol-5-yl]meth-yl}-1H-benzimidazol-2(3H)-one.

Youssef Kandri Rodi1, Amal Haoudi1, Frédéric Capet2, Christian Rolando3, Lahcen El Ammari4.   

Abstract

In the title compound, C24H18ClN3O2, the benzimidazole plane is nearly perpendicular to the phenyl ring and to the isoxazole ring, making dihedral angles of 75.95 (7) and 73.04 (8)°, respectively, but the two residues point in opposite directions with respect to the benzimidazole plane. The dihedral angle between the chloro-phenyl and isoxazole rings is 7.95 (8)°. In the crystal, mol-ecules are linked by pairs of C-H⋯O hydrogen bonds into inversion dimers.

Entities:  

Year:  2013        PMID: 24427077      PMCID: PMC3884387          DOI: 10.1107/S160053681302299X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of isoxazoline derivatives, see: Sakuma et al. (2011 ▶); Hu et al. (2010 ▶); Wang et al. (2010 ▶). For benzimidazol-2-one derivatives, see: Belaziz et al. (2012 ▶).

Experimental

Crystal data

C24H18ClN3O2 M = 415.86 Triclinic, a = 8.5427 (2) Å b = 9.8290 (2) Å c = 13.2658 (3) Å α = 81.133 (1)° β = 78.763 (1)° γ = 64.343 (1)° V = 981.73 (4) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.60 × 0.39 × 0.13 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.688, T max = 0.746 70806 measured reflections 5994 independent reflections 4622 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.143 S = 1.03 5994 reflections 271 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S160053681302299X/bt6928sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302299X/bt6928Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681302299X/bt6928Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H18ClN3O2Z = 2
Mr = 415.86F(000) = 432
Triclinic, P1Dx = 1.407 Mg m3
Hall symbol: -P 1Melting point: 467 K
a = 8.5427 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.8290 (2) ÅCell parameters from 9881 reflections
c = 13.2658 (3) Åθ = 2.7–29.9°
α = 81.133 (1)°µ = 0.22 mm1
β = 78.763 (1)°T = 296 K
γ = 64.343 (1)°Prism, colourless
V = 981.73 (4) Å30.60 × 0.39 × 0.13 mm
Bruker APEXII CCD diffractometer5994 independent reflections
Radiation source: fine-focus sealed tube4622 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 30.6°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.688, Tmax = 0.746k = −14→14
70806 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0745P)2 + 0.2335P] where P = (Fo2 + 2Fc2)/3
5994 reflections(Δ/σ)max = 0.001
271 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.96270 (18)0.07935 (15)1.15305 (10)0.0408 (3)
C21.0111 (2)0.19835 (18)1.13183 (12)0.0491 (3)
H21.09510.20111.16580.059*
C30.9335 (2)0.31396 (17)1.05931 (11)0.0466 (3)
H30.96590.39471.04460.056*
C40.80752 (16)0.31087 (14)1.00813 (9)0.0362 (2)
C50.75890 (19)0.19111 (17)1.03279 (11)0.0445 (3)
H50.67280.18901.00040.053*
C60.8363 (2)0.07437 (17)1.10491 (12)0.0468 (3)
H60.8035−0.00611.12060.056*
C70.73329 (17)0.42911 (14)0.92671 (9)0.0362 (2)
C80.62184 (18)0.43492 (16)0.85805 (10)0.0422 (3)
H80.57460.36610.85650.051*
C90.59949 (17)0.56105 (15)0.79592 (10)0.0400 (3)
C100.50513 (19)0.63221 (18)0.70493 (11)0.0480 (3)
H10A0.41190.59970.70840.058*
H10B0.45200.74140.70690.058*
C110.6890 (2)0.68917 (17)0.54875 (11)0.0461 (3)
C120.79140 (18)0.47023 (16)0.47125 (10)0.0436 (3)
C130.8769 (2)0.35197 (19)0.40860 (12)0.0562 (4)
H130.94920.35970.34780.067*
C140.8507 (3)0.2209 (2)0.43976 (15)0.0669 (5)
H140.90870.13870.39960.080*
C150.7409 (3)0.20923 (19)0.52889 (14)0.0628 (4)
H150.72390.12080.54650.075*
C160.6556 (2)0.32735 (18)0.59249 (12)0.0522 (3)
H160.58250.31960.65290.063*
C170.68346 (18)0.45689 (16)0.56272 (10)0.0423 (3)
C180.8719 (2)0.68311 (19)0.37749 (12)0.0511 (3)
H18A0.98170.60690.34710.061*
H18B0.89780.75820.40190.061*
C190.75256 (18)0.75806 (16)0.29623 (10)0.0425 (3)
C200.6070 (2)0.89424 (17)0.31390 (11)0.0463 (3)
H200.58580.93880.37500.056*
C210.4936 (2)0.96400 (18)0.24177 (12)0.0511 (3)
H210.39601.05460.25470.061*
C220.5253 (2)0.8988 (2)0.15014 (12)0.0541 (4)
H220.44930.94570.10140.065*
C230.6691 (2)0.7652 (2)0.13163 (12)0.0570 (4)
H230.69090.72190.06990.068*
C240.7823 (2)0.69410 (19)0.20462 (12)0.0519 (3)
H240.87880.60290.19180.062*
Cl11.06618 (6)−0.06917 (5)1.24013 (3)0.05818 (13)
N10.7736 (2)0.54512 (15)0.90688 (11)0.0558 (3)
N20.62261 (16)0.59181 (13)0.60857 (8)0.0439 (3)
N30.79299 (16)0.61217 (14)0.46473 (9)0.0460 (3)
O10.68832 (17)0.63109 (13)0.82270 (9)0.0573 (3)
O20.66140 (18)0.81529 (13)0.56718 (9)0.0607 (3)
U11U22U33U12U13U23
C10.0437 (6)0.0438 (6)0.0331 (6)−0.0174 (5)−0.0066 (5)0.0017 (5)
C20.0552 (8)0.0538 (8)0.0485 (8)−0.0288 (7)−0.0227 (6)0.0051 (6)
C30.0585 (8)0.0477 (7)0.0469 (7)−0.0324 (6)−0.0205 (6)0.0059 (6)
C40.0397 (6)0.0411 (6)0.0304 (5)−0.0194 (5)−0.0054 (4)−0.0021 (4)
C50.0482 (7)0.0530 (7)0.0425 (7)−0.0304 (6)−0.0137 (5)0.0045 (6)
C60.0534 (8)0.0501 (7)0.0465 (7)−0.0320 (6)−0.0106 (6)0.0061 (6)
C70.0397 (6)0.0404 (6)0.0302 (5)−0.0181 (5)−0.0046 (4)−0.0033 (4)
C80.0461 (7)0.0499 (7)0.0370 (6)−0.0251 (6)−0.0112 (5)0.0008 (5)
C90.0389 (6)0.0455 (7)0.0324 (6)−0.0146 (5)−0.0045 (5)−0.0037 (5)
C100.0426 (7)0.0542 (8)0.0364 (6)−0.0096 (6)−0.0093 (5)−0.0002 (6)
C110.0496 (7)0.0452 (7)0.0376 (6)−0.0130 (6)−0.0134 (5)0.0017 (5)
C120.0442 (7)0.0445 (7)0.0364 (6)−0.0102 (5)−0.0162 (5)0.0010 (5)
C130.0591 (9)0.0556 (9)0.0421 (7)−0.0096 (7)−0.0122 (6)−0.0073 (6)
C140.0808 (12)0.0497 (9)0.0620 (10)−0.0106 (8)−0.0250 (9)−0.0130 (8)
C150.0821 (12)0.0489 (8)0.0619 (10)−0.0252 (8)−0.0306 (9)0.0021 (7)
C160.0599 (9)0.0520 (8)0.0465 (8)−0.0227 (7)−0.0213 (7)0.0069 (6)
C170.0436 (6)0.0438 (7)0.0355 (6)−0.0116 (5)−0.0174 (5)0.0027 (5)
C180.0454 (7)0.0613 (9)0.0436 (7)−0.0219 (7)−0.0084 (6)0.0060 (6)
C190.0439 (7)0.0489 (7)0.0364 (6)−0.0232 (6)−0.0040 (5)0.0018 (5)
C200.0536 (8)0.0479 (7)0.0382 (6)−0.0217 (6)−0.0083 (6)−0.0015 (5)
C210.0522 (8)0.0506 (8)0.0506 (8)−0.0212 (6)−0.0133 (6)0.0026 (6)
C220.0599 (9)0.0698 (10)0.0467 (8)−0.0390 (8)−0.0180 (7)0.0053 (7)
C230.0686 (10)0.0752 (11)0.0416 (7)−0.0425 (9)−0.0045 (7)−0.0115 (7)
C240.0528 (8)0.0564 (8)0.0448 (7)−0.0226 (7)0.0005 (6)−0.0091 (6)
Cl10.0641 (2)0.0540 (2)0.0521 (2)−0.02165 (18)−0.01949 (17)0.01336 (16)
N10.0801 (9)0.0523 (7)0.0520 (7)−0.0390 (7)−0.0331 (7)0.0130 (6)
N20.0495 (6)0.0440 (6)0.0317 (5)−0.0131 (5)−0.0093 (4)0.0009 (4)
N30.0494 (6)0.0461 (6)0.0368 (6)−0.0158 (5)−0.0077 (5)0.0022 (5)
O10.0810 (8)0.0494 (6)0.0542 (6)−0.0357 (6)−0.0315 (6)0.0140 (5)
O20.0779 (8)0.0466 (6)0.0534 (6)−0.0220 (6)−0.0090 (6)−0.0044 (5)
C1—C21.375 (2)C12—C171.400 (2)
C1—C61.378 (2)C13—C141.389 (3)
C1—Cl11.7342 (13)C13—H130.9300
C2—C31.384 (2)C14—C151.382 (3)
C2—H20.9300C14—H140.9300
C3—C41.3928 (18)C15—C161.386 (2)
C3—H30.9300C15—H150.9300
C4—C51.3845 (18)C16—C171.380 (2)
C4—C71.4701 (17)C16—H160.9300
C5—C61.386 (2)C17—N21.3882 (18)
C5—H50.9300C18—N31.4610 (19)
C6—H60.9300C18—C191.509 (2)
C7—N11.3037 (18)C18—H18A0.9700
C7—C81.4192 (17)C18—H18B0.9700
C8—C91.3394 (19)C19—C241.383 (2)
C8—H80.9300C19—C201.391 (2)
C9—O11.3449 (18)C20—C211.381 (2)
C9—C101.4922 (18)C20—H200.9300
C10—N21.4527 (18)C21—C221.386 (2)
C10—H10A0.9700C21—H210.9300
C10—H10B0.9700C22—C231.371 (3)
C11—O21.2124 (19)C22—H220.9300
C11—N31.3772 (19)C23—C241.390 (2)
C11—N21.388 (2)C23—H230.9300
C12—C131.379 (2)C24—H240.9300
C12—N31.3902 (19)N1—O11.4088 (16)
C2—C1—C6121.31 (13)C15—C14—H14119.1
C2—C1—Cl1119.23 (11)C13—C14—H14119.1
C6—C1—Cl1119.44 (11)C14—C15—C16121.02 (17)
C1—C2—C3119.24 (13)C14—C15—H15119.5
C1—C2—H2120.4C16—C15—H15119.5
C3—C2—H2120.4C17—C16—C15117.41 (16)
C2—C3—C4120.78 (13)C17—C16—H16121.3
C2—C3—H3119.6C15—C16—H16121.3
C4—C3—H3119.6C16—C17—N2131.99 (14)
C5—C4—C3118.59 (12)C16—C17—C12121.66 (14)
C5—C4—C7120.80 (11)N2—C17—C12106.35 (13)
C3—C4—C7120.56 (12)N3—C18—C19111.88 (12)
C4—C5—C6121.11 (12)N3—C18—H18A109.2
C4—C5—H5119.4C19—C18—H18A109.2
C6—C5—H5119.4N3—C18—H18B109.2
C1—C6—C5118.94 (13)C19—C18—H18B109.2
C1—C6—H6120.5H18A—C18—H18B107.9
C5—C6—H6120.5C24—C19—C20118.70 (13)
N1—C7—C8110.87 (12)C24—C19—C18121.82 (14)
N1—C7—C4120.56 (11)C20—C19—C18119.47 (13)
C8—C7—C4128.52 (12)C21—C20—C19120.76 (14)
C9—C8—C7105.03 (12)C21—C20—H20119.6
C9—C8—H8127.5C19—C20—H20119.6
C7—C8—H8127.5C20—C21—C22119.91 (15)
C8—C9—O1109.84 (12)C20—C21—H21120.0
C8—C9—C10133.67 (14)C22—C21—H21120.0
O1—C9—C10116.44 (13)C23—C22—C21119.81 (15)
N2—C10—C9111.65 (11)C23—C22—H22120.1
N2—C10—H10A109.3C21—C22—H22120.1
C9—C10—H10A109.3C22—C23—C24120.32 (14)
N2—C10—H10B109.3C22—C23—H23119.8
C9—C10—H10B109.3C24—C23—H23119.8
H10A—C10—H10B108.0C19—C24—C23120.49 (15)
O2—C11—N3127.39 (15)C19—C24—H24119.8
O2—C11—N2127.01 (14)C23—C24—H24119.8
N3—C11—N2105.60 (13)C7—N1—O1105.96 (11)
C13—C12—N3132.02 (15)C17—N2—C11110.57 (12)
C13—C12—C17120.70 (15)C17—N2—C10126.87 (13)
N3—C12—C17107.24 (12)C11—N2—C10122.56 (13)
C12—C13—C14117.41 (16)C11—N3—C12110.25 (12)
C12—C13—H13121.3C11—N3—C18122.37 (13)
C14—C13—H13121.3C12—N3—C18126.95 (13)
C15—C14—C13121.78 (16)C9—O1—N1108.30 (11)
C6—C1—C2—C3−1.2 (2)C24—C19—C20—C210.4 (2)
Cl1—C1—C2—C3177.46 (12)C18—C19—C20—C21−178.77 (14)
C1—C2—C3—C40.1 (2)C19—C20—C21—C22−0.6 (2)
C2—C3—C4—C51.3 (2)C20—C21—C22—C230.1 (2)
C2—C3—C4—C7−176.27 (13)C21—C22—C23—C240.5 (3)
C3—C4—C5—C6−1.6 (2)C20—C19—C24—C230.3 (2)
C7—C4—C5—C6175.95 (13)C18—C19—C24—C23179.41 (15)
C2—C1—C6—C50.9 (2)C22—C23—C24—C19−0.7 (3)
Cl1—C1—C6—C5−177.76 (11)C8—C7—N1—O1−0.27 (17)
C4—C5—C6—C10.5 (2)C4—C7—N1—O1177.18 (12)
C5—C4—C7—N1176.96 (14)C16—C17—N2—C11179.49 (14)
C3—C4—C7—N1−5.6 (2)C12—C17—N2—C110.00 (15)
C5—C4—C7—C8−6.1 (2)C16—C17—N2—C10−0.9 (2)
C3—C4—C7—C8171.39 (14)C12—C17—N2—C10179.61 (12)
N1—C7—C8—C90.37 (17)O2—C11—N2—C17−179.88 (14)
C4—C7—C8—C9−176.82 (12)N3—C11—N2—C17−0.18 (15)
C7—C8—C9—O1−0.32 (15)O2—C11—N2—C100.5 (2)
C7—C8—C9—C10177.14 (14)N3—C11—N2—C10−179.80 (12)
C8—C9—C10—N2−96.06 (19)C9—C10—N2—C1778.91 (18)
O1—C9—C10—N281.27 (16)C9—C10—N2—C11−101.52 (15)
N3—C12—C13—C14177.73 (15)O2—C11—N3—C12179.99 (15)
C17—C12—C13—C140.3 (2)N2—C11—N3—C120.29 (15)
C12—C13—C14—C151.2 (3)O2—C11—N3—C18−7.1 (2)
C13—C14—C15—C16−1.7 (3)N2—C11—N3—C18173.20 (12)
C14—C15—C16—C170.6 (2)C13—C12—N3—C11−178.00 (15)
C15—C16—C17—N2−178.55 (14)C17—C12—N3—C11−0.30 (15)
C15—C16—C17—C120.9 (2)C13—C12—N3—C189.5 (2)
C13—C12—C17—C16−1.4 (2)C17—C12—N3—C18−172.80 (13)
N3—C12—C17—C16−179.37 (12)C19—C18—N3—C11−89.12 (17)
C13—C12—C17—N2178.19 (13)C19—C18—N3—C1282.55 (18)
N3—C12—C17—N20.18 (14)C8—C9—O1—N10.17 (16)
N3—C18—C19—C24−104.54 (17)C10—C9—O1—N1−177.78 (12)
N3—C18—C19—C2074.59 (18)C7—N1—O1—C90.07 (17)
D—H···AD—HH···AD···AD—H···A
C20—H20···O2i0.932.533.1949 (19)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C20—H20⋯O2i 0.932.533.1949 (19)129

Symmetry code: (i) .

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