Literature DB >> 24427056

1-{2-[(E)-2-(2-Nitro-phen-yl)ethen-yl]-1-phenyl-sulfonyl-1H-indol-3-yl}ethanone.

S Karthikeyan1, K Sethusankar1, Velu Saravanan2, Arasambattu K Mohanakrishnan2.   

Abstract

In the title compound, C24H18N2O5S, the S atom has a distorted tetra-hedral configuration, with bond angles varying from 105.11 (7) to 119.98 (8)°. As a result of the electron-withdrawing character of the phenyl-sulfonyl group, the N-Csp (2) bond lengths [1.414 (2) and 1.413 (2) Å] are slightly longer than the reported value of 1.355 (14) Å for N atoms with a planar configuration. The indole moiety is essentially planar, with a maximum deviation of 0.0177 (14) Å for the N atom. The phenyl ring of the sulfonyl substituent makes a dihedral angle of 85.70 (7)° with the mean plane of the indole moiety. The mol-ecular structure features intra-molecular C-H⋯O hydrogen bonds, which generate S(6) and S(12) ring motifs. In the crystal, adjacent mol-ecules are linked via C-H⋯O hydrogen bonds, forming infinite C(7) chains running along the a-axis direction. The crystal packing also features C-H⋯π inter-actions, which form a three-dimensional structure.

Entities:  

Year:  2013        PMID: 24427056      PMCID: PMC3884461          DOI: 10.1107/S1600536813022241

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of Indole derivatives, see: Rodriguez et al. (1985 ▶); Chai et al. (2006 ▶); Olgen & Coban (2003 ▶). For related crystal structures, see: Karthikeyan et al. (2011 ▶, 2012 ▶). For related bond distances and bond-angle geometries and distortions, see: Allen (1981 ▶); Allen et al. (1987 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶). For the Thorpe–Ingold effect, see: Bassindale (1984 ▶).

Experimental

Crystal data

C24H18N2O5S M = 446.46 Monoclinic, a = 8.2409 (8) Å b = 16.1702 (15) Å c = 15.3700 (15) Å β = 95.775 (5)° V = 2037.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.28 × 0.25 × 0.23 mm

Data collection

Bruker SMART APEXII CCD diffractometer 18837 measured reflections 4960 independent reflections 3893 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.118 S = 1.02 4960 reflections 290 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813022241/su2631sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813022241/su2631Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813022241/su2631Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H18N2O5SF(000) = 928
Mr = 446.46Dx = 1.455 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -p 2ynCell parameters from 4960 reflections
a = 8.2409 (8) Åθ = 1.8–28.4°
b = 16.1702 (15) ŵ = 0.20 mm1
c = 15.3700 (15) ÅT = 296 K
β = 95.775 (5)°Block, yellow
V = 2037.8 (3) Å30.28 × 0.25 × 0.23 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3893 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.021
Graphite monochromatorθmax = 28.4°, θmin = 1.8°
ω and φ scansh = −10→7
18837 measured reflectionsk = −17→21
4960 independent reflectionsl = −19→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.059P)2 + 0.5665P] where P = (Fo2 + 2Fc2)/3
4960 reflections(Δ/σ)max = 0.001
290 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.21108 (19)0.10784 (11)0.52063 (10)0.0405 (4)
C20.1313 (3)0.17176 (13)0.47358 (13)0.0570 (5)
H20.12840.22500.49630.068*
C30.0567 (2)0.15297 (15)0.39184 (13)0.0627 (5)
H30.00190.19440.35870.075*
C40.0611 (2)0.07382 (14)0.35767 (12)0.0579 (5)
H40.00890.06310.30230.070*
C50.1414 (2)0.01077 (13)0.40421 (11)0.0499 (4)
H50.1450−0.04210.38060.060*
C60.21746 (19)0.02793 (11)0.48764 (10)0.0395 (4)
C70.31131 (18)−0.02214 (10)0.55255 (10)0.0379 (3)
C80.35638 (18)0.02700 (9)0.62314 (10)0.0356 (3)
C90.45622 (19)0.00804 (10)0.70516 (10)0.0375 (3)
H90.55620.03460.71650.045*
C100.41139 (19)−0.04492 (10)0.76375 (10)0.0381 (3)
H100.3066−0.06680.75590.046*
C110.5202 (2)−0.07076 (9)0.84085 (10)0.0386 (3)
C120.6855 (2)−0.08209 (11)0.83104 (13)0.0500 (4)
H120.7229−0.06960.77750.060*
C130.7946 (2)−0.11089 (13)0.89725 (15)0.0618 (5)
H130.9040−0.11720.88850.074*
C140.7415 (3)−0.13056 (13)0.97719 (14)0.0652 (6)
H140.8147−0.15141.02180.078*
C150.5818 (3)−0.11937 (12)0.99067 (12)0.0566 (5)
H150.5464−0.13161.04480.068*
C160.4726 (2)−0.08979 (10)0.92347 (10)0.0422 (4)
C170.10318 (18)0.16933 (9)0.72059 (10)0.0339 (3)
C180.0997 (2)0.11710 (11)0.79151 (10)0.0426 (4)
H180.19370.08970.81430.051*
C19−0.0445 (2)0.10613 (12)0.82802 (11)0.0478 (4)
H19−0.04830.07110.87570.057*
C20−0.1833 (2)0.14712 (12)0.79391 (11)0.0460 (4)
H20−0.28000.14040.81950.055*
C21−0.1796 (2)0.19756 (12)0.72260 (12)0.0466 (4)
H21−0.27430.22410.69940.056*
C22−0.03571 (19)0.20929 (10)0.68482 (11)0.0415 (4)
H22−0.03280.24340.63630.050*
C230.3572 (2)−0.10893 (11)0.53594 (12)0.0513 (4)
C240.4614 (3)−0.15953 (12)0.59949 (13)0.0617 (5)
H24A0.3984−0.17810.64500.093*
H24B0.5515−0.12680.62450.093*
H24C0.5018−0.20650.57020.093*
N10.30044 (16)0.10825 (8)0.60412 (8)0.0394 (3)
N20.3042 (2)−0.07812 (9)0.94350 (10)0.0501 (4)
O10.28218 (16)0.25924 (7)0.62838 (9)0.0549 (3)
O20.41828 (14)0.17130 (8)0.74404 (8)0.0498 (3)
O30.20813 (17)−0.04423 (10)0.89080 (9)0.0653 (4)
O40.2671 (2)−0.10333 (12)1.01319 (10)0.0862 (5)
O50.3144 (3)−0.13858 (12)0.46632 (13)0.1255 (10)
S10.28946 (5)0.18452 (2)0.67705 (3)0.03893 (12)
U11U22U33U12U13U23
C10.0387 (8)0.0493 (9)0.0345 (8)0.0064 (7)0.0078 (6)0.0042 (7)
C20.0639 (12)0.0574 (11)0.0499 (10)0.0185 (9)0.0072 (9)0.0088 (9)
C30.0602 (12)0.0790 (14)0.0479 (11)0.0200 (11)0.0012 (9)0.0180 (10)
C40.0465 (10)0.0853 (15)0.0409 (10)0.0039 (10)−0.0008 (8)0.0064 (9)
C50.0443 (9)0.0639 (11)0.0414 (9)−0.0026 (8)0.0030 (7)−0.0025 (8)
C60.0354 (8)0.0484 (9)0.0356 (8)−0.0002 (7)0.0080 (6)0.0027 (7)
C70.0364 (8)0.0411 (8)0.0367 (8)−0.0010 (6)0.0060 (6)0.0015 (6)
C80.0336 (7)0.0380 (8)0.0363 (8)0.0016 (6)0.0089 (6)0.0037 (6)
C90.0354 (8)0.0392 (8)0.0378 (8)0.0019 (6)0.0028 (6)−0.0007 (6)
C100.0350 (8)0.0430 (9)0.0363 (8)0.0012 (6)0.0033 (6)−0.0008 (7)
C110.0429 (9)0.0342 (8)0.0376 (8)−0.0022 (6)−0.0006 (6)−0.0016 (6)
C120.0441 (9)0.0502 (10)0.0547 (10)−0.0022 (8)0.0004 (8)0.0038 (8)
C130.0457 (10)0.0613 (12)0.0743 (14)−0.0011 (9)−0.0142 (9)−0.0001 (10)
C140.0725 (14)0.0595 (12)0.0569 (12)0.0018 (10)−0.0271 (10)0.0017 (10)
C150.0834 (15)0.0468 (10)0.0369 (9)−0.0011 (9)−0.0081 (9)−0.0002 (8)
C160.0551 (10)0.0337 (8)0.0370 (8)−0.0014 (7)0.0014 (7)−0.0035 (6)
C170.0335 (7)0.0331 (7)0.0347 (7)−0.0002 (6)0.0020 (6)−0.0054 (6)
C180.0422 (9)0.0481 (9)0.0366 (8)0.0067 (7)−0.0005 (7)0.0026 (7)
C190.0499 (10)0.0556 (10)0.0382 (9)0.0001 (8)0.0066 (7)0.0065 (8)
C200.0377 (9)0.0561 (10)0.0446 (9)−0.0045 (7)0.0062 (7)−0.0037 (8)
C210.0349 (8)0.0533 (10)0.0506 (10)0.0052 (7)−0.0008 (7)0.0015 (8)
C220.0417 (9)0.0401 (8)0.0419 (9)0.0022 (7)−0.0007 (7)0.0050 (7)
C230.0586 (11)0.0445 (10)0.0495 (10)−0.0001 (8)−0.0006 (8)−0.0066 (8)
C240.0823 (15)0.0428 (10)0.0596 (12)0.0124 (10)0.0054 (10)−0.0016 (9)
N10.0437 (7)0.0401 (7)0.0349 (7)0.0076 (6)0.0060 (5)0.0013 (5)
N20.0696 (10)0.0408 (8)0.0419 (8)0.0020 (7)0.0159 (7)0.0004 (6)
O10.0575 (8)0.0386 (6)0.0708 (8)−0.0015 (5)0.0165 (6)0.0090 (6)
O20.0369 (6)0.0521 (7)0.0589 (8)−0.0016 (5)−0.0030 (5)−0.0118 (6)
O30.0606 (9)0.0722 (10)0.0661 (9)0.0154 (7)0.0206 (7)0.0209 (7)
O40.1070 (13)0.1054 (13)0.0524 (9)0.0156 (11)0.0377 (9)0.0191 (9)
O50.191 (2)0.0768 (12)0.0917 (13)0.0510 (14)−0.0689 (14)−0.0432 (11)
S10.0365 (2)0.0349 (2)0.0456 (2)−0.00095 (15)0.00548 (16)−0.00227 (16)
C1—C21.389 (2)C14—H140.9300
C1—C61.391 (2)C15—C161.385 (2)
C1—N11.414 (2)C15—H150.9300
C2—C31.376 (3)C16—N21.464 (2)
C2—H20.9300C17—C221.380 (2)
C3—C41.385 (3)C17—C181.382 (2)
C3—H30.9300C17—S11.7526 (15)
C4—C51.376 (3)C18—C191.375 (2)
C4—H40.9300C18—H180.9300
C5—C61.397 (2)C19—C201.379 (2)
C5—H50.9300C19—H190.9300
C6—C71.447 (2)C20—C211.369 (3)
C7—C81.366 (2)C20—H200.9300
C7—C231.482 (2)C21—C221.385 (2)
C8—N11.413 (2)C21—H210.9300
C8—C91.467 (2)C22—H220.9300
C9—C101.322 (2)C23—O51.193 (2)
C9—H90.9300C23—C241.480 (3)
C10—C111.473 (2)C24—H24A0.9600
C10—H100.9300C24—H24B0.9600
C11—C121.397 (2)C24—H24C0.9600
C11—C161.401 (2)N1—S11.6752 (14)
C12—C131.370 (3)N2—O31.2058 (19)
C12—H120.9300N2—O41.2135 (19)
C13—C141.382 (3)O1—S11.4192 (13)
C13—H130.9300O2—S11.4187 (12)
C14—C151.365 (3)
C2—C1—C6122.34 (16)C16—C15—H15120.1
C2—C1—N1130.19 (17)C15—C16—C11122.11 (17)
C6—C1—N1107.45 (13)C15—C16—N2116.51 (16)
C3—C2—C1117.12 (19)C11—C16—N2121.38 (15)
C3—C2—H2121.4C22—C17—C18121.22 (15)
C1—C2—H2121.4C22—C17—S1120.38 (12)
C2—C3—C4121.59 (18)C18—C17—S1118.40 (12)
C2—C3—H3119.2C19—C18—C17119.23 (15)
C4—C3—H3119.2C19—C18—H18120.4
C5—C4—C3121.13 (18)C17—C18—H18120.4
C5—C4—H4119.4C18—C19—C20120.04 (16)
C3—C4—H4119.4C18—C19—H19120.0
C4—C5—C6118.54 (18)C20—C19—H19120.0
C4—C5—H5120.7C21—C20—C19120.40 (16)
C6—C5—H5120.7C21—C20—H20119.8
C1—C6—C5119.28 (16)C19—C20—H20119.8
C1—C6—C7107.80 (14)C20—C21—C22120.41 (16)
C5—C6—C7132.91 (16)C20—C21—H21119.8
C8—C7—C6107.81 (14)C22—C21—H21119.8
C8—C7—C23129.34 (15)C17—C22—C21118.68 (15)
C6—C7—C23122.62 (15)C17—C22—H22120.7
C7—C8—N1108.64 (13)C21—C22—H22120.7
C7—C8—C9130.18 (14)O5—C23—C24117.99 (18)
N1—C8—C9121.02 (14)O5—C23—C7118.50 (18)
C10—C9—C8123.36 (15)C24—C23—C7123.42 (16)
C10—C9—H9118.3C23—C24—H24A109.5
C8—C9—H9118.3C23—C24—H24B109.5
C9—C10—C11122.86 (15)H24A—C24—H24B109.5
C9—C10—H10118.6C23—C24—H24C109.5
C11—C10—H10118.6H24A—C24—H24C109.5
C12—C11—C16115.74 (15)H24B—C24—H24C109.5
C12—C11—C10118.13 (15)C8—N1—C1108.22 (13)
C16—C11—C10126.03 (15)C8—N1—S1125.77 (11)
C13—C12—C11122.58 (19)C1—N1—S1123.54 (11)
C13—C12—H12118.7O3—N2—O4122.63 (17)
C11—C12—H12118.7O3—N2—C16119.31 (14)
C12—C13—C14119.7 (2)O4—N2—C16118.06 (17)
C12—C13—H13120.1O2—S1—O1119.98 (8)
C14—C13—H13120.1O2—S1—N1106.73 (7)
C15—C14—C13120.05 (18)O1—S1—N1106.04 (8)
C15—C14—H14120.0O2—S1—C17108.79 (7)
C13—C14—H14120.0O1—S1—C17109.17 (8)
C14—C15—C16119.79 (19)N1—S1—C17105.11 (7)
C14—C15—H15120.1
C6—C1—C2—C30.3 (3)S1—C17—C18—C19178.28 (13)
N1—C1—C2—C3178.49 (17)C17—C18—C19—C20−0.1 (3)
C1—C2—C3—C4−0.2 (3)C18—C19—C20—C211.3 (3)
C2—C3—C4—C5−0.3 (3)C19—C20—C21—C22−1.2 (3)
C3—C4—C5—C60.7 (3)C18—C17—C22—C211.4 (2)
C2—C1—C6—C50.1 (3)S1—C17—C22—C21−178.17 (13)
N1—C1—C6—C5−178.46 (14)C20—C21—C22—C17−0.1 (3)
C2—C1—C6—C7179.14 (16)C8—C7—C23—O5−174.0 (2)
N1—C1—C6—C70.59 (17)C6—C7—C23—O5−0.3 (3)
C4—C5—C6—C1−0.6 (2)C8—C7—C23—C242.5 (3)
C4—C5—C6—C7−179.37 (18)C6—C7—C23—C24176.22 (17)
C1—C6—C7—C81.22 (17)C7—C8—N1—C12.95 (17)
C5—C6—C7—C8−179.90 (17)C9—C8—N1—C1178.81 (13)
C1—C6—C7—C23−173.71 (15)C7—C8—N1—S1165.52 (11)
C5—C6—C7—C235.2 (3)C9—C8—N1—S1−18.6 (2)
C6—C7—C8—N1−2.55 (17)C2—C1—N1—C8179.46 (18)
C23—C7—C8—N1171.93 (16)C6—C1—N1—C8−2.14 (17)
C6—C7—C8—C9−177.91 (15)C2—C1—N1—S116.4 (3)
C23—C7—C8—C9−3.4 (3)C6—C1—N1—S1−165.19 (11)
C7—C8—C9—C10−65.7 (2)C15—C16—N2—O3172.02 (17)
N1—C8—C9—C10119.47 (18)C11—C16—N2—O3−7.1 (2)
C8—C9—C10—C11172.71 (14)C15—C16—N2—O4−8.0 (2)
C9—C10—C11—C12−37.6 (2)C11—C16—N2—O4172.85 (17)
C9—C10—C11—C16146.09 (17)C8—N1—S1—O231.41 (15)
C16—C11—C12—C130.8 (3)C1—N1—S1—O2−168.55 (12)
C10—C11—C12—C13−175.90 (17)C8—N1—S1—O1160.41 (13)
C11—C12—C13—C140.6 (3)C1—N1—S1—O1−39.55 (15)
C12—C13—C14—C15−1.6 (3)C8—N1—S1—C17−84.02 (14)
C13—C14—C15—C161.3 (3)C1—N1—S1—C1776.02 (14)
C14—C15—C16—C110.1 (3)C22—C17—S1—O2152.91 (13)
C14—C15—C16—N2−178.97 (17)C18—C17—S1—O2−26.65 (14)
C12—C11—C16—C15−1.1 (2)C22—C17—S1—O120.30 (15)
C10—C11—C16—C15175.24 (16)C18—C17—S1—O1−159.27 (12)
C12—C11—C16—N2177.94 (15)C22—C17—S1—N1−93.09 (13)
C10—C11—C16—N2−5.7 (2)C18—C17—S1—N187.35 (13)
C22—C17—C18—C19−1.3 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2···O10.932.352.935 (2)121
C18—H18···O30.932.463.108 (2)127
C20—H20···O2i0.932.683.319 (2)126
C5—H5···Cg1ii0.932.893.720 (2)149
C22—H22···Cg2iii0.932.733.4618 (18)137
C24—H24B···Cg3iv0.962.903.601 (3)131
Table 1

Hydrogen-bond geometry (Å, °)

Cg1, Cg2 and Cg3 are the centroids of the C17–C22, C11–C16 and C1–C6 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O10.932.352.935 (2)121
C18—H18⋯O30.932.463.108 (2)127
C20—H20⋯O2i 0.932.683.319 (2)126
C5—H5⋯Cg1ii 0.932.893.720 (2)149
C22—H22⋯Cg2iii 0.932.733.4618 (18)137
C24—H24BCg3iv 0.962.903.601 (3)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  Süreyya Olgen; Tülay Coban
Journal:  Biol Pharm Bull       Date:  2003-05       Impact factor: 2.233

4.  (E)-3-(2-Nitro-phen-yl)-1-{1-phenyl-sulfonyl-2-[(phenyl-sulfon-yl)meth-yl]-1H-indol-3-yl}prop-2-en-1-one.

Authors:  S Karthikeyan; K Sethusankar; Ganesan Gobi Rajeswaran; Arasambattu K Mohanakrishnan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-03

5.  2-Azido-methyl-3-methyl-1-phenyl-sulfonyl-1H-indole.

Authors:  S Karthikeyan; K Sethusankar; Ganesan Gobi Rajeswaran; Arasambattu K Mohanakrishnan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-06

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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