Literature DB >> 24427041

(E)-2-(1,1-Di-cyclo-hexyl-3-phenyl-all-yl)-5,5-dimethyl-1,3,2-dioxaborinane.

Gamal A El-Hiti1, Keith Smith2, Mark C Elliott2, Dyfyr Heulyn Jones2, Benson M Kariuki2.   

Abstract

The crystal structure of the title compound, C26H39BO2, which contains no strong hydrogen bond donors, displays only long C-H⋯O contacts between inversion-related pairs of mol-ecules. The structure contains layers rich in oxygen and boron parallel to the ac plane. The dioxaborinane ring adopts an envelope conformation with the C atom attached to the two methyl groups as the flap .

Entities:  

Year:  2013        PMID: 24427041      PMCID: PMC3884414          DOI: 10.1107/S1600536813021739

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and applications of allyl­boronic esters, see: Lombardo et al. (2002 ▶); Carosi & Hall (2007 ▶); Althaus et al. (2010 ▶); Fandrick et al. (2010 ▶); Clary et al. (2011 ▶); Hesse et al. (2012 ▶); Incerti-Pradillos et al. (2013 ▶). For the X-ray structure of a boronic ester, see: Sopková-de Oliveira Santos et al. (2003 ▶).

Experimental

Crystal data

C26H39BO2 M = 394.38 Triclinic, a = 9.4967 (3) Å b = 11.2837 (2) Å c = 12.0297 (4) Å α = 109.897 (2)° β = 96.388 (2)° γ = 102.048 (2)° V = 1161.90 (6) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 150 K 0.38 × 0.30 × 0.28 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.975, T max = 0.981 8277 measured reflections 5287 independent reflections 4303 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.128 S = 1.03 5287 reflections 264 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.20 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994) ▶; program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP99 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and CHEMDRAW Ultra (Cambridge Soft, 2001 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813021739/go2094sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813021739/go2094Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813021739/go2094Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H39BO2Z = 2
Mr = 394.38F(000) = 432
Triclinic, P1Dx = 1.127 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.4967 (3) ÅCell parameters from 4303 reflections
b = 11.2837 (2) Åθ = 2.2–27.5°
c = 12.0297 (4) ŵ = 0.07 mm1
α = 109.897 (2)°T = 150 K
β = 96.388 (2)°Block, colourless
γ = 102.048 (2)°0.38 × 0.30 × 0.28 mm
V = 1161.90 (6) Å3
Nonius KappaCCD diffractometer5287 independent reflections
Radiation source: fine-focus sealed tube4303 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
CCD slices, ω and phi scansθmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)h = −12→12
Tmin = 0.975, Tmax = 0.981k = −14→14
8277 measured reflectionsl = −15→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0488P)2 + 0.4651P] where P = (Fo2 + 2Fc2)/3
5287 reflections(Δ/σ)max = 0.004
264 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.24096 (15)0.23892 (13)0.62817 (11)0.0235 (3)
C20.22913 (18)0.35166 (15)0.71836 (13)0.0348 (3)
H20.28280.43490.72320.042*
C30.14007 (19)0.34351 (17)0.80085 (14)0.0411 (4)
H30.13190.42110.86070.049*
C40.06330 (17)0.22337 (17)0.79648 (14)0.0382 (4)
H40.00290.21790.85340.046*
C50.07497 (17)0.11101 (16)0.70869 (14)0.0348 (3)
H50.02280.02800.70550.042*
C60.16250 (16)0.11876 (13)0.62506 (13)0.0281 (3)
H60.16890.04070.56480.034*
C70.33581 (15)0.25145 (13)0.54118 (12)0.0255 (3)
H70.40980.33120.56440.031*
C80.32693 (14)0.16134 (12)0.43362 (11)0.0221 (3)
H80.25300.08180.41170.027*
C90.42193 (14)0.17080 (12)0.34118 (11)0.0205 (3)
C100.58492 (14)0.24810 (12)0.40612 (11)0.0218 (3)
H100.58130.32930.47250.026*
C110.65750 (15)0.16852 (13)0.46484 (12)0.0260 (3)
H11A0.59780.14660.52100.031*
H11B0.65890.08560.40140.031*
C120.81407 (16)0.24166 (14)0.53369 (13)0.0330 (3)
H12A0.81210.31950.60310.040*
H12B0.85760.18440.56550.040*
C130.90896 (17)0.28434 (15)0.45299 (15)0.0380 (4)
H13A0.92000.20640.38830.046*
H13B1.00790.33640.50100.046*
C140.83863 (17)0.36592 (15)0.39717 (15)0.0361 (4)
H14A0.89960.39080.34300.043*
H14B0.83490.44710.46180.043*
C150.68323 (15)0.29066 (13)0.32573 (13)0.0283 (3)
H15A0.68750.21250.25770.034*
H15B0.64000.34660.29180.034*
C160.35441 (15)0.23557 (12)0.25946 (12)0.0229 (3)
H160.41520.23310.19630.027*
C170.19670 (16)0.16006 (14)0.19300 (13)0.0309 (3)
H17A0.19280.06710.15000.037*
H17B0.13150.16450.25220.037*
C180.14178 (19)0.21631 (17)0.10238 (15)0.0404 (4)
H18A0.20110.20420.03870.048*
H18B0.03840.16830.06350.048*
C190.1523 (2)0.36161 (18)0.16395 (16)0.0436 (4)
H19A0.12550.39700.10210.052*
H19B0.08140.37260.21870.052*
C200.30661 (19)0.43826 (15)0.23583 (14)0.0364 (4)
H20A0.30730.53010.28040.044*
H20B0.37540.43790.17970.044*
C210.35828 (17)0.37906 (13)0.32525 (13)0.0287 (3)
H21A0.45970.42900.36890.034*
H21B0.29400.38550.38520.034*
C220.51831 (16)−0.10974 (13)0.09454 (13)0.0290 (3)
H22A0.6131−0.11460.13380.035*
H22B0.5259−0.11580.01150.035*
C230.39668 (15)−0.22485 (12)0.08888 (12)0.0256 (3)
C240.37886 (18)−0.20513 (13)0.21769 (12)0.0301 (3)
H24A0.2915−0.27200.21580.036*
H24B0.4659−0.21830.26070.036*
C250.25412 (17)−0.23168 (15)0.01216 (14)0.0363 (4)
H25A0.1768−0.30600.00920.055*
H25B0.2688−0.2427−0.06970.055*
H25C0.2250−0.15070.04770.055*
C260.44291 (19)−0.35104 (14)0.03502 (14)0.0373 (4)
H26A0.5375−0.34380.08220.056*
H26B0.4524−0.3656−0.04860.056*
H26C0.3685−0.42460.03690.056*
B10.42494 (16)0.02685 (14)0.25703 (13)0.0210 (3)
O10.36243 (11)−0.07729 (8)0.28350 (8)0.0261 (2)
O20.49222 (11)0.01427 (9)0.16035 (8)0.0273 (2)
U11U22U33U12U13U23
C10.0250 (7)0.0294 (6)0.0191 (6)0.0096 (5)0.0060 (5)0.0110 (5)
C20.0404 (9)0.0318 (7)0.0276 (7)0.0065 (6)0.0118 (6)0.0056 (6)
C30.0444 (9)0.0484 (9)0.0257 (8)0.0151 (8)0.0147 (7)0.0040 (7)
C40.0306 (8)0.0644 (10)0.0285 (8)0.0168 (7)0.0142 (6)0.0232 (7)
C50.0303 (8)0.0443 (8)0.0394 (8)0.0094 (6)0.0119 (6)0.0263 (7)
C60.0299 (7)0.0298 (7)0.0296 (7)0.0115 (6)0.0099 (6)0.0138 (6)
C70.0291 (7)0.0248 (6)0.0240 (7)0.0063 (5)0.0094 (5)0.0102 (5)
C80.0238 (7)0.0240 (6)0.0219 (6)0.0079 (5)0.0073 (5)0.0108 (5)
C90.0243 (6)0.0216 (6)0.0188 (6)0.0083 (5)0.0072 (5)0.0092 (5)
C100.0229 (6)0.0225 (6)0.0210 (6)0.0072 (5)0.0066 (5)0.0081 (5)
C110.0286 (7)0.0282 (6)0.0230 (7)0.0092 (5)0.0049 (5)0.0106 (5)
C120.0309 (8)0.0338 (7)0.0318 (8)0.0121 (6)0.0013 (6)0.0085 (6)
C130.0264 (8)0.0372 (8)0.0450 (9)0.0078 (6)0.0061 (7)0.0093 (7)
C140.0276 (8)0.0352 (8)0.0442 (9)0.0035 (6)0.0120 (7)0.0145 (7)
C150.0285 (7)0.0301 (7)0.0295 (7)0.0067 (6)0.0111 (6)0.0140 (6)
C160.0265 (7)0.0262 (6)0.0219 (6)0.0114 (5)0.0088 (5)0.0123 (5)
C170.0295 (8)0.0356 (7)0.0295 (7)0.0114 (6)0.0042 (6)0.0136 (6)
C180.0355 (9)0.0569 (10)0.0353 (8)0.0190 (8)0.0016 (7)0.0228 (7)
C190.0482 (10)0.0627 (11)0.0443 (9)0.0370 (9)0.0182 (8)0.0340 (8)
C200.0511 (10)0.0379 (8)0.0391 (8)0.0276 (7)0.0211 (7)0.0244 (7)
C210.0378 (8)0.0276 (7)0.0282 (7)0.0158 (6)0.0107 (6)0.0142 (5)
C220.0338 (8)0.0268 (7)0.0280 (7)0.0129 (6)0.0142 (6)0.0067 (5)
C230.0303 (7)0.0246 (6)0.0224 (7)0.0103 (5)0.0080 (5)0.0068 (5)
C240.0475 (9)0.0219 (6)0.0245 (7)0.0128 (6)0.0112 (6)0.0096 (5)
C250.0369 (9)0.0403 (8)0.0265 (7)0.0126 (7)0.0036 (6)0.0054 (6)
C260.0498 (10)0.0284 (7)0.0339 (8)0.0173 (7)0.0133 (7)0.0064 (6)
B10.0235 (7)0.0238 (7)0.0179 (7)0.0080 (5)0.0047 (5)0.0094 (5)
O10.0400 (6)0.0207 (4)0.0199 (5)0.0090 (4)0.0112 (4)0.0082 (4)
O20.0363 (6)0.0229 (4)0.0255 (5)0.0100 (4)0.0153 (4)0.0083 (4)
C1—C61.3902 (19)C16—C171.531 (2)
C1—C21.3983 (18)C16—C211.5316 (17)
C1—C71.4777 (17)C16—H161.0000
C2—C31.388 (2)C17—C181.532 (2)
C2—H20.9500C17—H17A0.9900
C3—C41.379 (2)C17—H17B0.9900
C3—H30.9500C18—C191.528 (2)
C4—C51.381 (2)C18—H18A0.9900
C4—H40.9500C18—H18B0.9900
C5—C61.3879 (19)C19—C201.524 (3)
C5—H50.9500C19—H19A0.9900
C6—H60.9500C19—H19B0.9900
C7—C81.3264 (18)C20—C211.5338 (19)
C7—H70.9500C20—H20A0.9900
C8—C91.5251 (16)C20—H20B0.9900
C8—H80.9500C21—H21A0.9900
C9—C161.5672 (17)C21—H21B0.9900
C9—C101.5717 (18)C22—O21.4424 (15)
C9—B11.6034 (18)C22—C231.5238 (19)
C10—C111.5369 (18)C22—H22A0.9900
C10—C151.5386 (17)C22—H22B0.9900
C10—H101.0000C23—C241.5227 (18)
C11—C121.525 (2)C23—C251.523 (2)
C11—H11A0.9900C23—C261.5285 (18)
C11—H11B0.9900C24—O11.4408 (15)
C12—C131.523 (2)C24—H24A0.9900
C12—H12A0.9900C24—H24B0.9900
C12—H12B0.9900C25—H25A0.9800
C13—C141.524 (2)C25—H25B0.9800
C13—H13A0.9900C25—H25C0.9800
C13—H13B0.9900C26—H26A0.9800
C14—C151.528 (2)C26—H26B0.9800
C14—H14A0.9900C26—H26C0.9800
C14—H14B0.9900B1—O11.3565 (17)
C15—H15A0.9900B1—O21.3682 (16)
C15—H15B0.9900
C6—C1—C2117.89 (12)C17—C16—H16106.8
C6—C1—C7122.74 (12)C21—C16—H16106.8
C2—C1—C7119.37 (12)C9—C16—H16106.8
C3—C2—C1120.89 (14)C18—C17—C16111.14 (12)
C3—C2—H2119.6C18—C17—H17A109.4
C1—C2—H2119.6C16—C17—H17A109.4
C4—C3—C2120.37 (14)C18—C17—H17B109.4
C4—C3—H3119.8C16—C17—H17B109.4
C2—C3—H3119.8H17A—C17—H17B108.0
C3—C4—C5119.46 (13)C19—C18—C17111.29 (13)
C3—C4—H4120.3C19—C18—H18A109.4
C5—C4—H4120.3C17—C18—H18A109.4
C4—C5—C6120.36 (14)C19—C18—H18B109.4
C4—C5—H5119.8C17—C18—H18B109.4
C6—C5—H5119.8H18A—C18—H18B108.0
C5—C6—C1121.03 (13)C20—C19—C18111.51 (12)
C5—C6—H6119.5C20—C19—H19A109.3
C1—C6—H6119.5C18—C19—H19A109.3
C8—C7—C1125.85 (12)C20—C19—H19B109.3
C8—C7—H7117.1C18—C19—H19B109.3
C1—C7—H7117.1H19A—C19—H19B108.0
C7—C8—C9127.42 (12)C19—C20—C21111.18 (13)
C7—C8—H8116.3C19—C20—H20A109.4
C9—C8—H8116.3C21—C20—H20A109.4
C8—C9—C16109.58 (10)C19—C20—H20B109.4
C8—C9—C10110.43 (10)C21—C20—H20B109.4
C16—C9—C10111.93 (10)H20A—C20—H20B108.0
C8—C9—B1109.36 (10)C16—C21—C20110.77 (12)
C16—C9—B1108.39 (10)C16—C21—H21A109.5
C10—C9—B1107.06 (10)C20—C21—H21A109.5
C11—C10—C15109.13 (11)C16—C21—H21B109.5
C11—C10—C9110.54 (10)C20—C21—H21B109.5
C15—C10—C9115.16 (11)H21A—C21—H21B108.1
C11—C10—H10107.2O2—C22—C23112.27 (10)
C15—C10—H10107.2O2—C22—H22A109.2
C9—C10—H10107.2C23—C22—H22A109.2
C12—C11—C10112.66 (11)O2—C22—H22B109.2
C12—C11—H11A109.1C23—C22—H22B109.2
C10—C11—H11A109.1H22A—C22—H22B107.9
C12—C11—H11B109.1C24—C23—C25111.00 (12)
C10—C11—H11B109.1C24—C23—C22107.48 (11)
H11A—C11—H11B107.8C25—C23—C22110.22 (12)
C13—C12—C11111.29 (12)C24—C23—C26108.90 (12)
C13—C12—H12A109.4C25—C23—C26110.06 (12)
C11—C12—H12A109.4C22—C23—C26109.12 (11)
C13—C12—H12B109.4O1—C24—C23112.89 (11)
C11—C12—H12B109.4O1—C24—H24A109.0
H12A—C12—H12B108.0C23—C24—H24A109.0
C12—C13—C14110.08 (12)O1—C24—H24B109.0
C12—C13—H13A109.6C23—C24—H24B109.0
C14—C13—H13A109.6H24A—C24—H24B107.8
C12—C13—H13B109.6C23—C25—H25A109.5
C14—C13—H13B109.6C23—C25—H25B109.5
H13A—C13—H13B108.2H25A—C25—H25B109.5
C13—C14—C15111.34 (12)C23—C25—H25C109.5
C13—C14—H14A109.4H25A—C25—H25C109.5
C15—C14—H14A109.4H25B—C25—H25C109.5
C13—C14—H14B109.4C23—C26—H26A109.5
C15—C14—H14B109.4C23—C26—H26B109.5
H14A—C14—H14B108.0H26A—C26—H26B109.5
C14—C15—C10111.18 (12)C23—C26—H26C109.5
C14—C15—H15A109.4H26A—C26—H26C109.5
C10—C15—H15A109.4H26B—C26—H26C109.5
C14—C15—H15B109.4O1—B1—O2122.35 (11)
C10—C15—H15B109.4O1—B1—C9119.72 (11)
H15A—C15—H15B108.0O2—B1—C9117.93 (11)
C17—C16—C21108.63 (11)B1—O1—C24120.49 (10)
C17—C16—C9112.83 (11)B1—O2—C22119.36 (10)
C21—C16—C9114.57 (11)
D—H···AD—HH···AD···AD—H···A
C22—H22B···O2i0.992.693.5773 (18)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C22—H22B⋯O2i 0.992.693.5773 (18)150

Symmetry code: (i) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Highly stereoselective synthesis of Z-homoallylic alcohols by kinetic resolution of racemic secondary allyl boronates.

Authors:  Celia A Incerti-Pradillos; Mikhail A Kabeshov; Andrei V Malkov
Journal:  Angew Chem Int Ed Engl       Date:  2013-04-10       Impact factor: 15.336

3.  Mild and general zinc-alkoxide-catalyzed allylations of ketones with allyl pinacol boronates.

Authors:  Keith R Fandrick; Daniel R Fandrick; Joe J Gao; Jonathan T Reeves; Zhulin Tan; Wenjie Li; Jinhua J Song; Bruce Lu; Nathan K Yee; Chris H Senanayake
Journal:  Org Lett       Date:  2010-09-03       Impact factor: 6.005

4.  Hydride as a leaving group in the reaction of pinacolborane with halides under ambient Grignard and Barbier conditions. One-pot synthesis of alkyl, aryl, heteroaryl, vinyl, and allyl pinacolboronic esters.

Authors:  Jacob W Clary; Terry J Rettenmaier; Rachel Snelling; Whitney Bryks; Jesse Banwell; W Todd Wipke; Bakthan Singaram
Journal:  J Org Chem       Date:  2011-11-01       Impact factor: 4.354

5.  Application of the lithiation-borylation reaction to the preparation of enantioenriched allylic boron reagents and subsequent in situ conversion into 1,2,4-trisubstituted homoallylic alcohols with complete control over all elements of stereochemistry.

Authors:  Martin Althaus; Adeem Mahmood; José Ramón Suárez; Stephen P Thomas; Varinder K Aggarwal
Journal:  J Am Chem Soc       Date:  2010-03-24       Impact factor: 15.419

6.  2-(6-bromopyridin-3-yl)-4,4,5,5-tetramethyl-1,3,2-dioxaborolane and (6-bromopyridin-3-yl)boronic acid, new bifunctional building blocks for combinatorial chemistry.

Authors:  Jana Sopková-de Oliveira Santos; Jean-Charles Lancelot; Alexandre Bouillon; Sylvain Rault
Journal:  Acta Crystallogr C       Date:  2003-02-11       Impact factor: 1.172

7.  Catalytic enantioselective preparation of alpha-substituted allylboronates: one-pot addition to functionalized aldehydes and a route to chiral allylic trifluoroborate reagents.

Authors:  Lisa Carosi; Dennis G Hall
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

8.  Diastereodivergent synthesis of trisubstituted alkenes through protodeboronation of allylic boronic esters: application to the synthesis of the Californian red scale beetle pheromone.

Authors:  Matthew J Hesse; Craig P Butts; Christine L Willis; Varinder K Aggarwal
Journal:  Angew Chem Int Ed Engl       Date:  2012-11-05       Impact factor: 15.336

  8 in total

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