Literature DB >> 24427031

Tetra-hydro-alstonine.

Xavier Cachet1, François-Hugues Porée1, Sylvie Michel1, Pascale Lemoine2.   

Abstract

In the title compound, C21H24N2O3 [systematic name: methyl (20α)-16,17-dide-hydro-19α-methyl-18-oxayohimban-16-carb-oxy-l-ate], the mol-ecule adopts an L-type conformation. The crystal packing is governed by one N-H⋯π and one C-H⋯π inter-actions. The crystal cohesion is ensured by inter-molecular van der Waals contacts [shortest O⋯O contact = 3.199 (2) Å].

Entities:  

Year:  2013        PMID: 24427031      PMCID: PMC3884471          DOI: 10.1107/S1600536813021168

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the extraction of tetra­hydro­alstonine (THA) from natural sources, see: Zenk & Juenger (2007 ▶); Mandal et al. (1983 ▶); Langlois et al. (1979 ▶). For stereochemistry studies, see: Wenkert et al. (1961 ▶); Wenkert & Roychaudhuri (1957 ▶); Shamma & Richey (1963 ▶); Lounasmaa & Kan (1980 ▶); Höfle et al. (1980 ▶). For the semisynthesis, see: Poirot (2007 ▶); Beziat & Hatinguais (1977 ▶); Zsadon et al. (1979 ▶); Guéritte et al. (1983 ▶); Hemscheidt & Zenk (1985 ▶) and for synthetic studies, see: Gutzwiller et al. (1971 ▶); Wenkert et al. (1976 ▶); Zou et al. (2010 ▶). For the biological activity of TMA, see Zou et al. (2010 ▶); Sharma et al. (1988 ▶). For a related structure, see: Laus & Wurst (2008 ▶).

Experimental

Crystal data

C21H24N2O3 M = 352.42 Orthorhombic, a = 6.719 (1) Å b = 8.169 (2) Å c = 34.120 (5) Å V = 1872.8 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.50 × 0.30 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (COLLECT; Nonius, 2004 ▶) T min = 0.982, T max = 0.992 3300 measured reflections 3300 independent reflections 2537 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.114 S = 1.01 3300 reflections 247 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.11 e Å−3 Δρmin = −0.12 e Å−3 Absolute structure parameter: −0.3 (17) Data collection: COLLECT (Nonius, 2004 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813021168/bq2388sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813021168/bq2388Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H24N2O3F(000) = 752
Mr = 352.42Dx = 1.250 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ac 2abCell parameters from 1924 reflections
a = 6.719 (1) Åθ = 0.4–25.4°
b = 8.169 (2) ŵ = 0.08 mm1
c = 34.120 (5) ÅT = 293 K
V = 1872.8 (6) Å3Parallelepiped, colourless
Z = 40.50 × 0.30 × 0.10 mm
Nonius KappaCCD diffractometer3300 independent reflections
Radiation source: fine-focus sealed tube2537 reflections with I > 2σ(I)
Horizonally mounted graphite crystal monochromatorRint = 0.000
Detector resolution: 9 pixels mm-1θmax = 25.3°, θmin = 3.5°
CCD scansh = −8→8
Absorption correction: multi-scan (COLLECT; Nonius, 2004)k = −9→9
Tmin = 0.982, Tmax = 0.992l = −40→40
3300 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0585P)2 + 0.175P] where P = (Fo2 + 2Fc2)/3
3300 reflections(Δ/σ)max < 0.001
247 parametersΔρmax = 0.11 e Å3
0 restraintsΔρmin = −0.12 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.0941 (2)1.03273 (19)0.22093 (5)0.0543 (4)
H10.01061.09290.20840.065*
C20.2643 (3)0.9635 (2)0.20539 (6)0.0498 (4)
C30.3268 (3)0.9745 (3)0.16349 (6)0.0554 (5)
H30.388 (3)1.082 (3)0.1594 (6)0.072 (6)*
N40.4687 (2)0.8412 (2)0.15597 (6)0.0661 (5)
C50.6291 (3)0.8379 (3)0.18547 (8)0.0769 (7)
H5A0.68870.94570.18740.092*
H5B0.73150.76160.17720.092*
C60.5502 (3)0.7872 (3)0.22502 (8)0.0703 (6)
H6A0.52480.67040.22520.084*
H6B0.64830.81110.24510.084*
C70.3616 (3)0.8781 (2)0.23357 (6)0.0560 (5)
C80.2480 (3)0.8919 (2)0.26876 (6)0.0561 (5)
C90.2699 (4)0.8333 (3)0.30708 (7)0.0713 (6)
H90.38060.77130.31390.086*
C100.1262 (5)0.8682 (3)0.33441 (8)0.0834 (8)
H100.13960.82840.35980.100*
C11−0.0392 (5)0.9624 (3)0.32467 (7)0.0834 (7)
H11−0.13570.98280.34360.100*
C12−0.0628 (4)1.0259 (3)0.28766 (6)0.0701 (6)
H12−0.17171.09120.28150.084*
C130.0803 (3)0.9893 (2)0.25995 (6)0.0542 (5)
C140.1540 (3)0.9621 (3)0.13484 (5)0.0536 (5)
H14A0.06201.05150.13950.064*
H14B0.08340.86020.13920.064*
C150.2267 (4)0.9687 (3)0.09227 (6)0.0640 (6)
H150.281 (4)1.076 (3)0.0888 (7)0.073 (7)*
C160.0636 (4)0.9412 (3)0.06288 (6)0.0662 (6)
C170.0518 (5)0.8003 (3)0.04332 (7)0.0847 (8)
H17−0.04690.79240.02430.102*
O180.1678 (3)0.6694 (2)0.04839 (6)0.1032 (7)
C190.3020 (5)0.6744 (3)0.08207 (8)0.0872 (8)
H190.22540.65180.10590.105*
C200.3918 (4)0.8443 (3)0.08520 (8)0.0797 (7)
H200.465 (4)0.871 (3)0.0595 (7)0.088 (7)*
C210.5520 (4)0.8600 (4)0.11650 (8)0.0887 (8)
H21A0.65300.77700.11220.106*
H21B0.61510.96640.11430.106*
C220.4475 (7)0.5356 (4)0.07534 (11)0.1426 (15)
H22A0.54210.56700.05560.214*
H22B0.37650.44010.06680.214*
H22C0.51620.51170.09930.214*
C23−0.0746 (4)1.0739 (3)0.05479 (6)0.0695 (6)
O24−0.2128 (3)1.0354 (2)0.02800 (5)0.0910 (6)
O25−0.0672 (3)1.2070 (2)0.06996 (5)0.0945 (6)
C26−0.3520 (5)1.1602 (4)0.01729 (10)0.1060 (10)
H26A−0.28151.25280.00690.159*
H26B−0.42641.19300.04000.159*
H26C−0.44141.1184−0.00230.159*
U11U22U33U12U13U23
N10.0552 (9)0.0540 (8)0.0537 (9)0.0087 (8)−0.0107 (8)−0.0008 (8)
C20.0463 (10)0.0450 (9)0.0581 (11)0.0012 (9)−0.0105 (9)−0.0051 (8)
C30.0481 (11)0.0531 (11)0.0651 (13)−0.0025 (10)−0.0025 (9)−0.0021 (10)
N40.0456 (9)0.0757 (12)0.0770 (13)0.0066 (9)0.0038 (9)−0.0051 (9)
C50.0452 (12)0.0821 (16)0.103 (2)0.0048 (12)−0.0055 (13)−0.0034 (15)
C60.0513 (12)0.0617 (12)0.0980 (18)0.0078 (11)−0.0201 (13)−0.0022 (12)
C70.0530 (11)0.0462 (10)0.0687 (14)0.0017 (9)−0.0153 (10)−0.0056 (9)
C80.0641 (12)0.0417 (9)0.0625 (13)−0.0021 (10)−0.0205 (11)−0.0017 (9)
C90.0917 (17)0.0530 (12)0.0691 (15)−0.0038 (13)−0.0249 (14)0.0064 (11)
C100.125 (2)0.0657 (14)0.0599 (15)−0.0183 (17)−0.0172 (16)0.0068 (11)
C110.115 (2)0.0756 (14)0.0595 (14)−0.0120 (18)0.0064 (14)−0.0098 (12)
C120.0783 (15)0.0660 (12)0.0661 (14)0.0020 (13)−0.0016 (12)−0.0122 (11)
C130.0597 (11)0.0488 (10)0.0540 (11)0.0013 (9)−0.0095 (9)−0.0051 (8)
C140.0508 (11)0.0587 (11)0.0512 (11)0.0008 (10)0.0007 (9)−0.0045 (9)
C150.0718 (15)0.0622 (12)0.0579 (12)−0.0037 (13)0.0122 (11)0.0005 (10)
C160.0851 (16)0.0686 (14)0.0451 (11)−0.0008 (13)0.0087 (11)0.0000 (10)
C170.116 (2)0.0844 (17)0.0538 (14)0.0096 (18)−0.0026 (14)−0.0102 (12)
O180.1444 (18)0.0837 (12)0.0815 (13)0.0226 (13)−0.0117 (13)−0.0251 (10)
C190.116 (2)0.0745 (16)0.0709 (16)0.0229 (16)0.0094 (16)−0.0093 (12)
C200.0769 (16)0.0944 (18)0.0676 (15)0.0116 (15)0.0276 (14)−0.0005 (13)
C210.0621 (15)0.111 (2)0.0934 (19)0.0084 (16)0.0258 (15)−0.0032 (16)
C220.191 (4)0.117 (2)0.120 (3)0.072 (3)−0.003 (3)−0.029 (2)
C230.0886 (17)0.0782 (16)0.0418 (11)0.0033 (14)0.0077 (12)0.0046 (10)
O240.1015 (13)0.1035 (13)0.0679 (10)0.0172 (12)−0.0157 (9)−0.0089 (9)
O250.1331 (17)0.0745 (10)0.0759 (12)0.0125 (12)−0.0110 (11)−0.0040 (9)
C260.102 (2)0.122 (2)0.094 (2)0.027 (2)−0.0055 (17)0.0224 (17)
N1—C21.382 (3)C14—H14A0.9700
N1—C131.381 (2)C14—H14B0.9700
N1—H10.8600C15—C161.502 (3)
C2—C71.356 (3)C15—C201.524 (3)
C2—C31.492 (3)C15—H150.96 (2)
C3—N41.470 (3)C16—C171.333 (3)
C3—C141.521 (3)C16—C231.454 (3)
C3—H30.98 (2)C17—O181.334 (3)
N4—C211.466 (3)C17—H170.9300
N4—C51.475 (3)O18—C191.461 (3)
C5—C61.508 (3)O18—O24i3.199 (2)
C5—H5A0.9700C19—C221.515 (4)
C5—H5B0.9700C19—C201.517 (4)
C6—C71.497 (3)C19—H190.9800
C6—H6A0.9700C20—C211.522 (4)
C6—H6B0.9700C20—H201.03 (3)
C7—C81.427 (3)C21—H21A0.9700
C8—C91.400 (3)C21—H21B0.9700
C8—C131.412 (3)C22—H22A0.9600
C9—C101.372 (4)C22—H22B0.9600
C9—H90.9300C22—H22C0.9600
C10—C111.392 (4)C23—O251.205 (3)
C10—H100.9300C23—O241.340 (3)
C11—C121.374 (3)O24—C261.430 (3)
C11—H110.9300C26—H26A0.9600
C12—C131.381 (3)C26—H26B0.9600
C12—H120.9300C26—H26C0.9600
C14—C151.533 (3)
C2—N1—C13108.68 (16)C15—C14—H14B109.4
C2—N1—H1125.7H14A—C14—H14B108.0
C13—N1—H1125.7C16—C15—C20109.01 (19)
C7—C2—N1109.74 (19)C16—C15—C14113.25 (19)
C7—C2—C3125.07 (18)C20—C15—C14111.00 (19)
N1—C2—C3125.14 (17)C16—C15—H15109.3 (14)
N4—C3—C2107.76 (17)C20—C15—H15108.5 (14)
N4—C3—C14109.48 (16)C14—C15—H15105.7 (14)
C2—C3—C14113.41 (16)C17—C16—C23120.7 (2)
N4—C3—H3111.4 (13)C17—C16—C15120.5 (2)
C2—C3—H3107.9 (13)C23—C16—C15118.75 (19)
C14—C3—H3106.9 (13)C16—C17—O18126.3 (3)
C21—N4—C3109.28 (18)C16—C17—H17116.8
C21—N4—C5110.49 (19)O18—C17—H17116.8
C3—N4—C5111.60 (17)C17—O18—C19116.12 (18)
N4—C5—C6111.05 (18)C17—O18—O24i117.37 (15)
N4—C5—H5A109.4C19—O18—O24i120.05 (15)
C6—C5—H5A109.4O18—C19—C22105.0 (2)
N4—C5—H5B109.4O18—C19—C20109.0 (2)
C6—C5—H5B109.4C22—C19—C20116.0 (3)
H5A—C5—H5B108.0O18—C19—H19108.9
C7—C6—C5109.63 (18)C22—C19—H19108.9
C7—C6—H6A109.7C20—C19—H19108.9
C5—C6—H6A109.7C19—C20—C21114.0 (2)
C7—C6—H6B109.7C19—C20—C15109.4 (2)
C5—C6—H6B109.7C21—C20—C15110.4 (2)
H6A—C6—H6B108.2C19—C20—H20108.9 (14)
C2—C7—C8107.32 (17)C21—C20—H20104.1 (14)
C2—C7—C6121.7 (2)C15—C20—H20109.9 (14)
C8—C7—C6130.99 (19)N4—C21—C20111.5 (2)
C9—C8—C13118.4 (2)N4—C21—H21A109.3
C9—C8—C7134.6 (2)C20—C21—H21A109.3
C13—C8—C7107.01 (17)N4—C21—H21B109.3
C10—C9—C8119.3 (2)C20—C21—H21B109.3
C10—C9—H9120.3H21A—C21—H21B108.0
C8—C9—H9120.3C19—C22—H22A109.5
C9—C10—C11120.9 (2)C19—C22—H22B109.5
C9—C10—H10119.5H22A—C22—H22B109.5
C11—C10—H10119.5C19—C22—H22C109.5
C12—C11—C10121.3 (2)H22A—C22—H22C109.5
C12—C11—H11119.3H22B—C22—H22C109.5
C10—C11—H11119.3O25—C23—O24122.2 (2)
C11—C12—C13117.8 (2)O25—C23—C16124.4 (2)
C11—C12—H12121.1O24—C23—C16113.4 (2)
C13—C12—H12121.1C23—O24—C26117.4 (2)
C12—C13—N1130.62 (19)O24—C26—H26A109.5
C12—C13—C8122.13 (19)O24—C26—H26B109.5
N1—C13—C8107.25 (18)H26A—C26—H26B109.5
C3—C14—C15111.33 (17)O24—C26—H26C109.5
C3—C14—H14A109.4H26A—C26—H26C109.5
C15—C14—H14A109.4H26B—C26—H26C109.5
C3—C14—H14B109.4
C13—N1—C2—C7−0.7 (2)C7—C8—C13—N1−0.3 (2)
C13—N1—C2—C3176.71 (18)N4—C3—C14—C15−57.9 (2)
C7—C2—C3—N417.0 (3)C2—C3—C14—C15−178.22 (18)
N1—C2—C3—N4−159.97 (17)C3—C14—C15—C16174.62 (19)
C7—C2—C3—C14138.4 (2)C3—C14—C15—C2051.6 (3)
N1—C2—C3—C14−38.6 (3)C20—C15—C16—C1717.6 (3)
C2—C3—N4—C21−173.13 (18)C14—C15—C16—C17−106.5 (3)
C14—C3—N4—C2163.1 (2)C20—C15—C16—C23−159.33 (19)
C2—C3—N4—C5−50.6 (2)C14—C15—C16—C2376.6 (3)
C14—C3—N4—C5−174.38 (18)C23—C16—C17—O18−179.2 (2)
C21—N4—C5—C6−169.4 (2)C15—C16—C17—O184.0 (4)
C3—N4—C5—C668.8 (2)C16—C17—O18—C198.7 (4)
N4—C5—C6—C7−45.6 (2)C16—C17—O18—O24i−143.1 (2)
N1—C2—C7—C80.5 (2)C17—O18—C19—C22−166.5 (3)
C3—C2—C7—C8−176.90 (18)O24i—O18—C19—C22−15.5 (3)
N1—C2—C7—C6178.97 (16)C17—O18—C19—C20−41.6 (3)
C3—C2—C7—C61.6 (3)O24i—O18—C19—C20109.46 (19)
C5—C6—C7—C212.5 (3)O18—C19—C20—C21−173.59 (19)
C5—C6—C7—C8−169.4 (2)C22—C19—C20—C21−55.4 (3)
C2—C7—C8—C9−179.6 (2)O18—C19—C20—C1562.3 (3)
C6—C7—C8—C92.1 (4)C22—C19—C20—C15−179.5 (2)
C2—C7—C8—C13−0.1 (2)C16—C15—C20—C19−49.3 (3)
C6—C7—C8—C13−178.41 (19)C14—C15—C20—C1976.1 (3)
C13—C8—C9—C101.8 (3)C16—C15—C20—C21−175.5 (2)
C7—C8—C9—C10−178.8 (2)C14—C15—C20—C21−50.1 (3)
C8—C9—C10—C11−0.7 (3)C3—N4—C21—C20−63.3 (3)
C9—C10—C11—C12−1.1 (4)C5—N4—C21—C20173.5 (2)
C10—C11—C12—C131.8 (3)C19—C20—C21—N4−67.0 (3)
C11—C12—C13—N1178.8 (2)C15—C20—C21—N456.6 (3)
C11—C12—C13—C8−0.7 (3)C17—C16—C23—O25−176.4 (3)
C2—N1—C13—C12−179.0 (2)C15—C16—C23—O250.5 (3)
C2—N1—C13—C80.6 (2)C17—C16—C23—O242.8 (3)
C9—C8—C13—C12−1.0 (3)C15—C16—C23—O24179.7 (2)
C7—C8—C13—C12179.33 (19)O25—C23—O24—C261.0 (4)
C9—C8—C13—N1179.34 (18)C16—C23—O24—C26−178.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···Cg1ii0.862.853.550 (2)139
C6—H6A···Cg2iii0.972.83.429 (3)121
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C8–C13 and C2/C7/C8/C13/N1 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯Cg1i 0.862.853.550 (2)139
C6—H6ACg2ii 0.972.83.429 (3)121

Symmetry codes: (i) ; (ii) .

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