| Literature DB >> 24427031 |
Xavier Cachet1, François-Hugues Porée1, Sylvie Michel1, Pascale Lemoine2.
Abstract
In the title compound, C21H24N2O3 [systematic name: methyl (20α)-16,17-dide-hydro-19α-methyl-18-oxayohimban-16-carb-oxy-l-ate], the mol-ecule adopts an L-type conformation. The crystal packing is governed by one N-H⋯π and one C-H⋯π inter-actions. The crystal cohesion is ensured by inter-molecular van der Waals contacts [shortest O⋯O contact = 3.199 (2) Å].Entities:
Year: 2013 PMID: 24427031 PMCID: PMC3884471 DOI: 10.1107/S1600536813021168
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H24N2O3 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 1924 reflections |
| θ = 0.4–25.4° | |
| µ = 0.08 mm−1 | |
| Parallelepiped, colourless | |
| 0.50 × 0.30 × 0.10 mm |
| Nonius KappaCCD diffractometer | 3300 independent reflections |
| Radiation source: fine-focus sealed tube | 2537 reflections with |
| Horizonally mounted graphite crystal monochromator | |
| Detector resolution: 9 pixels mm-1 | θmax = 25.3°, θmin = 3.5° |
| CCD scans | |
| Absorption correction: multi-scan ( | |
| 3300 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3300 reflections | (Δ/σ)max < 0.001 |
| 247 parameters | Δρmax = 0.11 e Å−3 |
| 0 restraints | Δρmin = −0.12 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.0941 (2) | 1.03273 (19) | 0.22093 (5) | 0.0543 (4) | |
| H1 | 0.0106 | 1.0929 | 0.2084 | 0.065* | |
| C2 | 0.2643 (3) | 0.9635 (2) | 0.20539 (6) | 0.0498 (4) | |
| C3 | 0.3268 (3) | 0.9745 (3) | 0.16349 (6) | 0.0554 (5) | |
| H3 | 0.388 (3) | 1.082 (3) | 0.1594 (6) | 0.072 (6)* | |
| N4 | 0.4687 (2) | 0.8412 (2) | 0.15597 (6) | 0.0661 (5) | |
| C5 | 0.6291 (3) | 0.8379 (3) | 0.18547 (8) | 0.0769 (7) | |
| H5A | 0.6887 | 0.9457 | 0.1874 | 0.092* | |
| H5B | 0.7315 | 0.7616 | 0.1772 | 0.092* | |
| C6 | 0.5502 (3) | 0.7872 (3) | 0.22502 (8) | 0.0703 (6) | |
| H6A | 0.5248 | 0.6704 | 0.2252 | 0.084* | |
| H6B | 0.6483 | 0.8111 | 0.2451 | 0.084* | |
| C7 | 0.3616 (3) | 0.8781 (2) | 0.23357 (6) | 0.0560 (5) | |
| C8 | 0.2480 (3) | 0.8919 (2) | 0.26876 (6) | 0.0561 (5) | |
| C9 | 0.2699 (4) | 0.8333 (3) | 0.30708 (7) | 0.0713 (6) | |
| H9 | 0.3806 | 0.7713 | 0.3139 | 0.086* | |
| C10 | 0.1262 (5) | 0.8682 (3) | 0.33441 (8) | 0.0834 (8) | |
| H10 | 0.1396 | 0.8284 | 0.3598 | 0.100* | |
| C11 | −0.0392 (5) | 0.9624 (3) | 0.32467 (7) | 0.0834 (7) | |
| H11 | −0.1357 | 0.9828 | 0.3436 | 0.100* | |
| C12 | −0.0628 (4) | 1.0259 (3) | 0.28766 (6) | 0.0701 (6) | |
| H12 | −0.1717 | 1.0912 | 0.2815 | 0.084* | |
| C13 | 0.0803 (3) | 0.9893 (2) | 0.25995 (6) | 0.0542 (5) | |
| C14 | 0.1540 (3) | 0.9621 (3) | 0.13484 (5) | 0.0536 (5) | |
| H14A | 0.0620 | 1.0515 | 0.1395 | 0.064* | |
| H14B | 0.0834 | 0.8602 | 0.1392 | 0.064* | |
| C15 | 0.2267 (4) | 0.9687 (3) | 0.09227 (6) | 0.0640 (6) | |
| H15 | 0.281 (4) | 1.076 (3) | 0.0888 (7) | 0.073 (7)* | |
| C16 | 0.0636 (4) | 0.9412 (3) | 0.06288 (6) | 0.0662 (6) | |
| C17 | 0.0518 (5) | 0.8003 (3) | 0.04332 (7) | 0.0847 (8) | |
| H17 | −0.0469 | 0.7924 | 0.0243 | 0.102* | |
| O18 | 0.1678 (3) | 0.6694 (2) | 0.04839 (6) | 0.1032 (7) | |
| C19 | 0.3020 (5) | 0.6744 (3) | 0.08207 (8) | 0.0872 (8) | |
| H19 | 0.2254 | 0.6518 | 0.1059 | 0.105* | |
| C20 | 0.3918 (4) | 0.8443 (3) | 0.08520 (8) | 0.0797 (7) | |
| H20 | 0.465 (4) | 0.871 (3) | 0.0595 (7) | 0.088 (7)* | |
| C21 | 0.5520 (4) | 0.8600 (4) | 0.11650 (8) | 0.0887 (8) | |
| H21A | 0.6530 | 0.7770 | 0.1122 | 0.106* | |
| H21B | 0.6151 | 0.9664 | 0.1143 | 0.106* | |
| C22 | 0.4475 (7) | 0.5356 (4) | 0.07534 (11) | 0.1426 (15) | |
| H22A | 0.5421 | 0.5670 | 0.0556 | 0.214* | |
| H22B | 0.3765 | 0.4401 | 0.0668 | 0.214* | |
| H22C | 0.5162 | 0.5117 | 0.0993 | 0.214* | |
| C23 | −0.0746 (4) | 1.0739 (3) | 0.05479 (6) | 0.0695 (6) | |
| O24 | −0.2128 (3) | 1.0354 (2) | 0.02800 (5) | 0.0910 (6) | |
| O25 | −0.0672 (3) | 1.2070 (2) | 0.06996 (5) | 0.0945 (6) | |
| C26 | −0.3520 (5) | 1.1602 (4) | 0.01729 (10) | 0.1060 (10) | |
| H26A | −0.2815 | 1.2528 | 0.0069 | 0.159* | |
| H26B | −0.4264 | 1.1930 | 0.0400 | 0.159* | |
| H26C | −0.4414 | 1.1184 | −0.0023 | 0.159* |
| N1 | 0.0552 (9) | 0.0540 (8) | 0.0537 (9) | 0.0087 (8) | −0.0107 (8) | −0.0008 (8) |
| C2 | 0.0463 (10) | 0.0450 (9) | 0.0581 (11) | 0.0012 (9) | −0.0105 (9) | −0.0051 (8) |
| C3 | 0.0481 (11) | 0.0531 (11) | 0.0651 (13) | −0.0025 (10) | −0.0025 (9) | −0.0021 (10) |
| N4 | 0.0456 (9) | 0.0757 (12) | 0.0770 (13) | 0.0066 (9) | 0.0038 (9) | −0.0051 (9) |
| C5 | 0.0452 (12) | 0.0821 (16) | 0.103 (2) | 0.0048 (12) | −0.0055 (13) | −0.0034 (15) |
| C6 | 0.0513 (12) | 0.0617 (12) | 0.0980 (18) | 0.0078 (11) | −0.0201 (13) | −0.0022 (12) |
| C7 | 0.0530 (11) | 0.0462 (10) | 0.0687 (14) | 0.0017 (9) | −0.0153 (10) | −0.0056 (9) |
| C8 | 0.0641 (12) | 0.0417 (9) | 0.0625 (13) | −0.0021 (10) | −0.0205 (11) | −0.0017 (9) |
| C9 | 0.0917 (17) | 0.0530 (12) | 0.0691 (15) | −0.0038 (13) | −0.0249 (14) | 0.0064 (11) |
| C10 | 0.125 (2) | 0.0657 (14) | 0.0599 (15) | −0.0183 (17) | −0.0172 (16) | 0.0068 (11) |
| C11 | 0.115 (2) | 0.0756 (14) | 0.0595 (14) | −0.0120 (18) | 0.0064 (14) | −0.0098 (12) |
| C12 | 0.0783 (15) | 0.0660 (12) | 0.0661 (14) | 0.0020 (13) | −0.0016 (12) | −0.0122 (11) |
| C13 | 0.0597 (11) | 0.0488 (10) | 0.0540 (11) | 0.0013 (9) | −0.0095 (9) | −0.0051 (8) |
| C14 | 0.0508 (11) | 0.0587 (11) | 0.0512 (11) | 0.0008 (10) | 0.0007 (9) | −0.0045 (9) |
| C15 | 0.0718 (15) | 0.0622 (12) | 0.0579 (12) | −0.0037 (13) | 0.0122 (11) | 0.0005 (10) |
| C16 | 0.0851 (16) | 0.0686 (14) | 0.0451 (11) | −0.0008 (13) | 0.0087 (11) | 0.0000 (10) |
| C17 | 0.116 (2) | 0.0844 (17) | 0.0538 (14) | 0.0096 (18) | −0.0026 (14) | −0.0102 (12) |
| O18 | 0.1444 (18) | 0.0837 (12) | 0.0815 (13) | 0.0226 (13) | −0.0117 (13) | −0.0251 (10) |
| C19 | 0.116 (2) | 0.0745 (16) | 0.0709 (16) | 0.0229 (16) | 0.0094 (16) | −0.0093 (12) |
| C20 | 0.0769 (16) | 0.0944 (18) | 0.0676 (15) | 0.0116 (15) | 0.0276 (14) | −0.0005 (13) |
| C21 | 0.0621 (15) | 0.111 (2) | 0.0934 (19) | 0.0084 (16) | 0.0258 (15) | −0.0032 (16) |
| C22 | 0.191 (4) | 0.117 (2) | 0.120 (3) | 0.072 (3) | −0.003 (3) | −0.029 (2) |
| C23 | 0.0886 (17) | 0.0782 (16) | 0.0418 (11) | 0.0033 (14) | 0.0077 (12) | 0.0046 (10) |
| O24 | 0.1015 (13) | 0.1035 (13) | 0.0679 (10) | 0.0172 (12) | −0.0157 (9) | −0.0089 (9) |
| O25 | 0.1331 (17) | 0.0745 (10) | 0.0759 (12) | 0.0125 (12) | −0.0110 (11) | −0.0040 (9) |
| C26 | 0.102 (2) | 0.122 (2) | 0.094 (2) | 0.027 (2) | −0.0055 (17) | 0.0224 (17) |
| N1—C2 | 1.382 (3) | C14—H14A | 0.9700 |
| N1—C13 | 1.381 (2) | C14—H14B | 0.9700 |
| N1—H1 | 0.8600 | C15—C16 | 1.502 (3) |
| C2—C7 | 1.356 (3) | C15—C20 | 1.524 (3) |
| C2—C3 | 1.492 (3) | C15—H15 | 0.96 (2) |
| C3—N4 | 1.470 (3) | C16—C17 | 1.333 (3) |
| C3—C14 | 1.521 (3) | C16—C23 | 1.454 (3) |
| C3—H3 | 0.98 (2) | C17—O18 | 1.334 (3) |
| N4—C21 | 1.466 (3) | C17—H17 | 0.9300 |
| N4—C5 | 1.475 (3) | O18—C19 | 1.461 (3) |
| C5—C6 | 1.508 (3) | O18—O24i | 3.199 (2) |
| C5—H5A | 0.9700 | C19—C22 | 1.515 (4) |
| C5—H5B | 0.9700 | C19—C20 | 1.517 (4) |
| C6—C7 | 1.497 (3) | C19—H19 | 0.9800 |
| C6—H6A | 0.9700 | C20—C21 | 1.522 (4) |
| C6—H6B | 0.9700 | C20—H20 | 1.03 (3) |
| C7—C8 | 1.427 (3) | C21—H21A | 0.9700 |
| C8—C9 | 1.400 (3) | C21—H21B | 0.9700 |
| C8—C13 | 1.412 (3) | C22—H22A | 0.9600 |
| C9—C10 | 1.372 (4) | C22—H22B | 0.9600 |
| C9—H9 | 0.9300 | C22—H22C | 0.9600 |
| C10—C11 | 1.392 (4) | C23—O25 | 1.205 (3) |
| C10—H10 | 0.9300 | C23—O24 | 1.340 (3) |
| C11—C12 | 1.374 (3) | O24—C26 | 1.430 (3) |
| C11—H11 | 0.9300 | C26—H26A | 0.9600 |
| C12—C13 | 1.381 (3) | C26—H26B | 0.9600 |
| C12—H12 | 0.9300 | C26—H26C | 0.9600 |
| C14—C15 | 1.533 (3) | ||
| C2—N1—C13 | 108.68 (16) | C15—C14—H14B | 109.4 |
| C2—N1—H1 | 125.7 | H14A—C14—H14B | 108.0 |
| C13—N1—H1 | 125.7 | C16—C15—C20 | 109.01 (19) |
| C7—C2—N1 | 109.74 (19) | C16—C15—C14 | 113.25 (19) |
| C7—C2—C3 | 125.07 (18) | C20—C15—C14 | 111.00 (19) |
| N1—C2—C3 | 125.14 (17) | C16—C15—H15 | 109.3 (14) |
| N4—C3—C2 | 107.76 (17) | C20—C15—H15 | 108.5 (14) |
| N4—C3—C14 | 109.48 (16) | C14—C15—H15 | 105.7 (14) |
| C2—C3—C14 | 113.41 (16) | C17—C16—C23 | 120.7 (2) |
| N4—C3—H3 | 111.4 (13) | C17—C16—C15 | 120.5 (2) |
| C2—C3—H3 | 107.9 (13) | C23—C16—C15 | 118.75 (19) |
| C14—C3—H3 | 106.9 (13) | C16—C17—O18 | 126.3 (3) |
| C21—N4—C3 | 109.28 (18) | C16—C17—H17 | 116.8 |
| C21—N4—C5 | 110.49 (19) | O18—C17—H17 | 116.8 |
| C3—N4—C5 | 111.60 (17) | C17—O18—C19 | 116.12 (18) |
| N4—C5—C6 | 111.05 (18) | C17—O18—O24i | 117.37 (15) |
| N4—C5—H5A | 109.4 | C19—O18—O24i | 120.05 (15) |
| C6—C5—H5A | 109.4 | O18—C19—C22 | 105.0 (2) |
| N4—C5—H5B | 109.4 | O18—C19—C20 | 109.0 (2) |
| C6—C5—H5B | 109.4 | C22—C19—C20 | 116.0 (3) |
| H5A—C5—H5B | 108.0 | O18—C19—H19 | 108.9 |
| C7—C6—C5 | 109.63 (18) | C22—C19—H19 | 108.9 |
| C7—C6—H6A | 109.7 | C20—C19—H19 | 108.9 |
| C5—C6—H6A | 109.7 | C19—C20—C21 | 114.0 (2) |
| C7—C6—H6B | 109.7 | C19—C20—C15 | 109.4 (2) |
| C5—C6—H6B | 109.7 | C21—C20—C15 | 110.4 (2) |
| H6A—C6—H6B | 108.2 | C19—C20—H20 | 108.9 (14) |
| C2—C7—C8 | 107.32 (17) | C21—C20—H20 | 104.1 (14) |
| C2—C7—C6 | 121.7 (2) | C15—C20—H20 | 109.9 (14) |
| C8—C7—C6 | 130.99 (19) | N4—C21—C20 | 111.5 (2) |
| C9—C8—C13 | 118.4 (2) | N4—C21—H21A | 109.3 |
| C9—C8—C7 | 134.6 (2) | C20—C21—H21A | 109.3 |
| C13—C8—C7 | 107.01 (17) | N4—C21—H21B | 109.3 |
| C10—C9—C8 | 119.3 (2) | C20—C21—H21B | 109.3 |
| C10—C9—H9 | 120.3 | H21A—C21—H21B | 108.0 |
| C8—C9—H9 | 120.3 | C19—C22—H22A | 109.5 |
| C9—C10—C11 | 120.9 (2) | C19—C22—H22B | 109.5 |
| C9—C10—H10 | 119.5 | H22A—C22—H22B | 109.5 |
| C11—C10—H10 | 119.5 | C19—C22—H22C | 109.5 |
| C12—C11—C10 | 121.3 (2) | H22A—C22—H22C | 109.5 |
| C12—C11—H11 | 119.3 | H22B—C22—H22C | 109.5 |
| C10—C11—H11 | 119.3 | O25—C23—O24 | 122.2 (2) |
| C11—C12—C13 | 117.8 (2) | O25—C23—C16 | 124.4 (2) |
| C11—C12—H12 | 121.1 | O24—C23—C16 | 113.4 (2) |
| C13—C12—H12 | 121.1 | C23—O24—C26 | 117.4 (2) |
| C12—C13—N1 | 130.62 (19) | O24—C26—H26A | 109.5 |
| C12—C13—C8 | 122.13 (19) | O24—C26—H26B | 109.5 |
| N1—C13—C8 | 107.25 (18) | H26A—C26—H26B | 109.5 |
| C3—C14—C15 | 111.33 (17) | O24—C26—H26C | 109.5 |
| C3—C14—H14A | 109.4 | H26A—C26—H26C | 109.5 |
| C15—C14—H14A | 109.4 | H26B—C26—H26C | 109.5 |
| C3—C14—H14B | 109.4 | ||
| C13—N1—C2—C7 | −0.7 (2) | C7—C8—C13—N1 | −0.3 (2) |
| C13—N1—C2—C3 | 176.71 (18) | N4—C3—C14—C15 | −57.9 (2) |
| C7—C2—C3—N4 | 17.0 (3) | C2—C3—C14—C15 | −178.22 (18) |
| N1—C2—C3—N4 | −159.97 (17) | C3—C14—C15—C16 | 174.62 (19) |
| C7—C2—C3—C14 | 138.4 (2) | C3—C14—C15—C20 | 51.6 (3) |
| N1—C2—C3—C14 | −38.6 (3) | C20—C15—C16—C17 | 17.6 (3) |
| C2—C3—N4—C21 | −173.13 (18) | C14—C15—C16—C17 | −106.5 (3) |
| C14—C3—N4—C21 | 63.1 (2) | C20—C15—C16—C23 | −159.33 (19) |
| C2—C3—N4—C5 | −50.6 (2) | C14—C15—C16—C23 | 76.6 (3) |
| C14—C3—N4—C5 | −174.38 (18) | C23—C16—C17—O18 | −179.2 (2) |
| C21—N4—C5—C6 | −169.4 (2) | C15—C16—C17—O18 | 4.0 (4) |
| C3—N4—C5—C6 | 68.8 (2) | C16—C17—O18—C19 | 8.7 (4) |
| N4—C5—C6—C7 | −45.6 (2) | C16—C17—O18—O24i | −143.1 (2) |
| N1—C2—C7—C8 | 0.5 (2) | C17—O18—C19—C22 | −166.5 (3) |
| C3—C2—C7—C8 | −176.90 (18) | O24i—O18—C19—C22 | −15.5 (3) |
| N1—C2—C7—C6 | 178.97 (16) | C17—O18—C19—C20 | −41.6 (3) |
| C3—C2—C7—C6 | 1.6 (3) | O24i—O18—C19—C20 | 109.46 (19) |
| C5—C6—C7—C2 | 12.5 (3) | O18—C19—C20—C21 | −173.59 (19) |
| C5—C6—C7—C8 | −169.4 (2) | C22—C19—C20—C21 | −55.4 (3) |
| C2—C7—C8—C9 | −179.6 (2) | O18—C19—C20—C15 | 62.3 (3) |
| C6—C7—C8—C9 | 2.1 (4) | C22—C19—C20—C15 | −179.5 (2) |
| C2—C7—C8—C13 | −0.1 (2) | C16—C15—C20—C19 | −49.3 (3) |
| C6—C7—C8—C13 | −178.41 (19) | C14—C15—C20—C19 | 76.1 (3) |
| C13—C8—C9—C10 | 1.8 (3) | C16—C15—C20—C21 | −175.5 (2) |
| C7—C8—C9—C10 | −178.8 (2) | C14—C15—C20—C21 | −50.1 (3) |
| C8—C9—C10—C11 | −0.7 (3) | C3—N4—C21—C20 | −63.3 (3) |
| C9—C10—C11—C12 | −1.1 (4) | C5—N4—C21—C20 | 173.5 (2) |
| C10—C11—C12—C13 | 1.8 (3) | C19—C20—C21—N4 | −67.0 (3) |
| C11—C12—C13—N1 | 178.8 (2) | C15—C20—C21—N4 | 56.6 (3) |
| C11—C12—C13—C8 | −0.7 (3) | C17—C16—C23—O25 | −176.4 (3) |
| C2—N1—C13—C12 | −179.0 (2) | C15—C16—C23—O25 | 0.5 (3) |
| C2—N1—C13—C8 | 0.6 (2) | C17—C16—C23—O24 | 2.8 (3) |
| C9—C8—C13—C12 | −1.0 (3) | C15—C16—C23—O24 | 179.7 (2) |
| C7—C8—C13—C12 | 179.33 (19) | O25—C23—O24—C26 | 1.0 (4) |
| C9—C8—C13—N1 | 179.34 (18) | C16—C23—O24—C26 | −178.2 (2) |
| H··· | ||||
| N1—H1··· | 0.86 | 2.85 | 3.550 (2) | 139 |
| C6—H6 | 0.97 | 2.8 | 3.429 (3) | 121 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C8–C13 and C2/C7/C8/C13/N1 rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯ | 0.86 | 2.85 | 3.550 (2) | 139 |
| C6—H6 | 0.97 | 2.8 | 3.429 (3) | 121 |
Symmetry codes: (i) ; (ii) .