| Literature DB >> 24427020 |
Abdel-Sattar S Hamad Elgazwy1, Ibrahim F Nassar2, Peter G Jones3.
Abstract
In the title mol-ecule, C13H15N3O4S, the benzene and pyrazole rings are inclined to each other at 77.48 (3)°. Two amino H atoms are involved in bifurcated hydrogen bonds, viz. intra-molecular N-H⋯O and inter-molecular N-H⋯O(N). The inter-molecular hydrogen bonds link the mol-ecules related by translation in [100] into chains. A short distance of 3.680 (3) Å between the centroids of benzene and pyrazole rings from neighbouring mol-ecules shows the presence of π-π inter-actions, which link the hydrogen-bonded chains into layers parallel to the ab plane.Entities:
Year: 2013 PMID: 24427020 PMCID: PMC3884399 DOI: 10.1107/S1600536813019326
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H15N3O4S | |
| Monoclinic, | Melting point: 408 K |
| Hall symbol: P 2yn | Cu |
| Cell parameters from 45300 reflections | |
| θ = 4.1–75.6° | |
| µ = 2.14 mm−1 | |
| β = 96.2633 (9)° | |
| Column, colourless | |
| 0.25 × 0.12 × 0.10 mm |
| Oxford Diffraction Xcalibur (Atlas, Nova) diffractometer | 3043 independent reflections |
| Radiation source: Nova (Cu) X-ray Source | 3035 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.3543 pixels mm-1 | θmax = 75.8°, θmin = 4.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 51079 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.002 | |
| 3043 reflections | Δρmax = 0.34 e Å−3 |
| 201 parameters | Δρmin = −0.39 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0050 (4) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes.Least-squares planes ( |
| Refinement. Refinement of |
| S1 | 0.23094 (4) | 0.321249 (17) | 0.345762 (16) | 0.01627 (10) | |
| O1 | 0.02102 (13) | 0.32316 (5) | 0.37347 (6) | 0.02126 (19) | |
| O2 | 0.41682 (14) | 0.32016 (5) | 0.40895 (5) | 0.02177 (19) | |
| O3 | 0.69858 (13) | 0.55623 (5) | 0.15472 (5) | 0.02182 (19) | |
| O4 | 0.39748 (12) | 0.58590 (5) | 0.06499 (5) | 0.01882 (18) | |
| N1 | 0.25242 (14) | 0.41272 (6) | 0.28744 (6) | 0.01595 (19) | |
| N2 | 0.06923 (14) | 0.43553 (6) | 0.23043 (6) | 0.0178 (2) | |
| C3 | 0.14389 (17) | 0.48527 (7) | 0.17142 (7) | 0.0168 (2) | |
| H3 | 0.0556 | 0.5119 | 0.1245 | 0.020* | |
| C4 | 0.36924 (17) | 0.49552 (7) | 0.18436 (7) | 0.0156 (2) | |
| C5 | 0.43824 (17) | 0.44590 (7) | 0.25821 (7) | 0.0156 (2) | |
| C6 | 0.50665 (17) | 0.54783 (7) | 0.13524 (7) | 0.0158 (2) | |
| C7 | 0.52593 (19) | 0.63686 (7) | 0.01022 (7) | 0.0201 (2) | |
| H7A | 0.6350 | 0.6000 | −0.0136 | 0.024* | |
| H7B | 0.5999 | 0.6843 | 0.0449 | 0.024* | |
| C8 | 0.3728 (2) | 0.67306 (8) | −0.06355 (8) | 0.0272 (3) | |
| H8A | 0.2989 | 0.6253 | −0.0966 | 0.041* | |
| H8B | 0.4525 | 0.7073 | −0.1031 | 0.041* | |
| H8C | 0.2672 | 0.7101 | −0.0390 | 0.041* | |
| C11 | 0.24897 (18) | 0.23989 (7) | 0.26731 (7) | 0.0173 (2) | |
| C12 | 0.07233 (19) | 0.22397 (8) | 0.20604 (8) | 0.0219 (2) | |
| H12 | −0.0601 | 0.2526 | 0.2104 | 0.026* | |
| C13 | 0.0935 (2) | 0.16557 (8) | 0.13850 (8) | 0.0248 (3) | |
| H13 | −0.0258 | 0.1540 | 0.0964 | 0.030* | |
| C14 | 0.2884 (2) | 0.12352 (8) | 0.13168 (8) | 0.0233 (3) | |
| C15 | 0.46013 (19) | 0.13919 (8) | 0.19509 (8) | 0.0227 (2) | |
| H15 | 0.5914 | 0.1094 | 0.1917 | 0.027* | |
| C16 | 0.44368 (18) | 0.19753 (8) | 0.26327 (8) | 0.0200 (2) | |
| H16 | 0.5622 | 0.2083 | 0.3061 | 0.024* | |
| C17 | 0.3134 (3) | 0.06341 (9) | 0.05575 (9) | 0.0335 (3) | |
| H17A | 0.3628 | 0.0964 | 0.0070 | 0.050* | |
| H17B | 0.1751 | 0.0364 | 0.0362 | 0.050* | |
| H17C | 0.4185 | 0.0184 | 0.0747 | 0.050* | |
| N3 | 0.63513 (16) | 0.43168 (7) | 0.29848 (7) | 0.0214 (2) | |
| H02 | 0.743 (3) | 0.4452 (11) | 0.2705 (11) | 0.033 (4)* | |
| H01 | 0.655 (3) | 0.3949 (11) | 0.3402 (11) | 0.033 (4)* |
| S1 | 0.01694 (16) | 0.01813 (15) | 0.01412 (15) | 0.00056 (9) | 0.00335 (10) | 0.00249 (9) |
| O1 | 0.0211 (4) | 0.0234 (4) | 0.0207 (4) | 0.0005 (3) | 0.0088 (3) | 0.0033 (3) |
| O2 | 0.0227 (4) | 0.0262 (4) | 0.0158 (4) | −0.0007 (3) | −0.0003 (3) | 0.0038 (3) |
| O3 | 0.0144 (4) | 0.0265 (4) | 0.0243 (4) | −0.0008 (3) | 0.0014 (3) | 0.0056 (3) |
| O4 | 0.0169 (4) | 0.0225 (4) | 0.0170 (4) | 0.0001 (3) | 0.0019 (3) | 0.0058 (3) |
| N1 | 0.0135 (4) | 0.0179 (4) | 0.0166 (4) | 0.0008 (3) | 0.0021 (3) | 0.0024 (3) |
| N2 | 0.0137 (4) | 0.0199 (5) | 0.0196 (5) | 0.0021 (3) | 0.0007 (3) | 0.0024 (4) |
| C3 | 0.0157 (5) | 0.0177 (5) | 0.0172 (5) | 0.0015 (4) | 0.0022 (4) | 0.0008 (4) |
| C4 | 0.0149 (5) | 0.0166 (5) | 0.0155 (5) | 0.0013 (4) | 0.0021 (4) | 0.0000 (4) |
| C5 | 0.0153 (5) | 0.0168 (5) | 0.0150 (5) | −0.0003 (4) | 0.0036 (4) | −0.0014 (4) |
| C6 | 0.0164 (5) | 0.0156 (5) | 0.0154 (5) | 0.0023 (4) | 0.0025 (4) | −0.0003 (4) |
| C7 | 0.0248 (6) | 0.0183 (5) | 0.0180 (5) | −0.0018 (4) | 0.0065 (4) | 0.0025 (4) |
| C8 | 0.0379 (7) | 0.0241 (6) | 0.0196 (6) | 0.0024 (5) | 0.0029 (5) | 0.0056 (4) |
| C11 | 0.0194 (5) | 0.0161 (5) | 0.0168 (5) | 0.0014 (4) | 0.0040 (4) | 0.0028 (4) |
| C12 | 0.0203 (6) | 0.0217 (6) | 0.0235 (6) | 0.0034 (4) | 0.0007 (4) | 0.0006 (4) |
| C13 | 0.0291 (6) | 0.0235 (6) | 0.0210 (6) | 0.0021 (5) | −0.0015 (5) | 0.0005 (5) |
| C14 | 0.0346 (7) | 0.0171 (5) | 0.0194 (6) | 0.0023 (5) | 0.0084 (5) | 0.0040 (4) |
| C15 | 0.0247 (6) | 0.0191 (5) | 0.0258 (6) | 0.0059 (4) | 0.0101 (5) | 0.0063 (4) |
| C16 | 0.0188 (5) | 0.0200 (5) | 0.0215 (6) | 0.0021 (4) | 0.0033 (4) | 0.0057 (4) |
| C17 | 0.0525 (9) | 0.0260 (6) | 0.0236 (6) | 0.0062 (6) | 0.0116 (6) | −0.0008 (5) |
| N3 | 0.0149 (5) | 0.0295 (5) | 0.0196 (5) | −0.0002 (4) | 0.0011 (4) | 0.0078 (4) |
| S1—O1 | 1.4279 (8) | C14—C15 | 1.3898 (18) |
| S1—O2 | 1.4311 (8) | C14—C17 | 1.5065 (17) |
| S1—N1 | 1.6827 (9) | C15—C16 | 1.3890 (17) |
| S1—C11 | 1.7478 (11) | C3—H3 | 0.9500 |
| O3—C6 | 1.2163 (14) | C7—H7A | 0.9900 |
| O4—C6 | 1.3437 (13) | C7—H7B | 0.9900 |
| O4—C7 | 1.4546 (13) | C8—H8A | 0.9800 |
| N1—C5 | 1.3915 (14) | C8—H8B | 0.9800 |
| N1—N2 | 1.4093 (12) | C8—H8C | 0.9800 |
| N2—C3 | 1.3089 (14) | C12—H12 | 0.9500 |
| C3—C4 | 1.4160 (15) | C13—H13 | 0.9500 |
| C4—C5 | 1.3927 (15) | C15—H15 | 0.9500 |
| C4—C6 | 1.4492 (15) | C16—H16 | 0.9500 |
| C5—N3 | 1.3375 (14) | C17—H17A | 0.9800 |
| C7—C8 | 1.5067 (16) | C17—H17B | 0.9800 |
| C11—C12 | 1.3927 (16) | C17—H17C | 0.9800 |
| C11—C16 | 1.3937 (16) | N3—H02 | 0.865 (18) |
| C12—C13 | 1.3870 (17) | N3—H01 | 0.852 (18) |
| C13—C14 | 1.3990 (18) | ||
| O1—S1—O2 | 120.77 (5) | C15—C16—C11 | 118.34 (11) |
| O1—S1—N1 | 105.63 (5) | N2—C3—H3 | 123.3 |
| O2—S1—N1 | 105.08 (5) | C4—C3—H3 | 123.3 |
| O1—S1—C11 | 110.42 (5) | O4—C7—H7A | 110.5 |
| O2—S1—C11 | 110.17 (5) | C8—C7—H7A | 110.5 |
| N1—S1—C11 | 103.01 (5) | O4—C7—H7B | 110.5 |
| C6—O4—C7 | 115.40 (8) | C8—C7—H7B | 110.5 |
| C5—N1—N2 | 111.48 (8) | H7A—C7—H7B | 108.6 |
| C5—N1—S1 | 126.66 (8) | C7—C8—H8A | 109.5 |
| N2—N1—S1 | 115.43 (7) | C7—C8—H8B | 109.5 |
| C3—N2—N1 | 104.03 (9) | H8A—C8—H8B | 109.5 |
| N2—C3—C4 | 113.39 (10) | C7—C8—H8C | 109.5 |
| C5—C4—C3 | 105.62 (9) | H8A—C8—H8C | 109.5 |
| C5—C4—C6 | 125.13 (10) | H8B—C8—H8C | 109.5 |
| C3—C4—C6 | 129.22 (10) | C13—C12—H12 | 120.6 |
| N3—C5—N1 | 123.87 (10) | C11—C12—H12 | 120.6 |
| N3—C5—C4 | 130.76 (10) | C12—C13—H13 | 119.6 |
| N1—C5—C4 | 105.34 (9) | C14—C13—H13 | 119.6 |
| O3—C6—O4 | 123.66 (10) | C16—C15—H15 | 119.3 |
| O3—C6—C4 | 124.24 (10) | C14—C15—H15 | 119.3 |
| O4—C6—C4 | 112.10 (9) | C15—C16—H16 | 120.8 |
| O4—C7—C8 | 106.37 (9) | C11—C16—H16 | 120.8 |
| C12—C11—C16 | 121.71 (11) | C14—C17—H17A | 109.5 |
| C12—C11—S1 | 118.75 (9) | C14—C17—H17B | 109.5 |
| C16—C11—S1 | 119.35 (9) | H17A—C17—H17B | 109.5 |
| C13—C12—C11 | 118.71 (11) | C14—C17—H17C | 109.5 |
| C12—C13—C14 | 120.83 (11) | H17A—C17—H17C | 109.5 |
| C15—C14—C13 | 119.07 (11) | H17B—C17—H17C | 109.5 |
| C15—C14—C17 | 120.36 (12) | C5—N3—H02 | 117.9 (11) |
| C13—C14—C17 | 120.56 (12) | C5—N3—H01 | 120.2 (11) |
| C16—C15—C14 | 121.31 (11) | H02—N3—H01 | 118.3 (15) |
| O1—S1—N1—C5 | 169.64 (9) | C5—C4—C6—O3 | −2.20 (18) |
| O2—S1—N1—C5 | 40.91 (10) | C3—C4—C6—O3 | 175.58 (11) |
| C11—S1—N1—C5 | −74.48 (10) | C5—C4—C6—O4 | 177.48 (10) |
| O1—S1—N1—N2 | −41.11 (9) | C3—C4—C6—O4 | −4.74 (16) |
| O2—S1—N1—N2 | −169.84 (7) | C6—O4—C7—C8 | −179.98 (9) |
| C11—S1—N1—N2 | 74.78 (8) | O1—S1—C11—C12 | 36.77 (10) |
| C5—N1—N2—C3 | −3.39 (12) | O2—S1—C11—C12 | 172.69 (9) |
| S1—N1—N2—C3 | −157.24 (8) | N1—S1—C11—C12 | −75.64 (10) |
| N1—N2—C3—C4 | 1.50 (12) | O1—S1—C11—C16 | −148.21 (9) |
| N2—C3—C4—C5 | 0.83 (13) | O2—S1—C11—C16 | −12.29 (11) |
| N2—C3—C4—C6 | −177.28 (11) | N1—S1—C11—C16 | 99.39 (9) |
| N2—N1—C5—N3 | −177.82 (10) | C16—C11—C12—C13 | −1.26 (17) |
| S1—N1—C5—N3 | −27.56 (16) | S1—C11—C12—C13 | 173.65 (9) |
| N2—N1—C5—C4 | 3.92 (12) | C11—C12—C13—C14 | −0.18 (18) |
| S1—N1—C5—C4 | 154.18 (8) | C12—C13—C14—C15 | 1.74 (18) |
| C3—C4—C5—N3 | 179.10 (12) | C12—C13—C14—C17 | −177.06 (11) |
| C6—C4—C5—N3 | −2.68 (19) | C13—C14—C15—C16 | −1.94 (17) |
| C3—C4—C5—N1 | −2.81 (12) | C17—C14—C15—C16 | 176.87 (11) |
| C6—C4—C5—N1 | 175.41 (10) | C14—C15—C16—C11 | 0.56 (17) |
| C7—O4—C6—O3 | 2.02 (15) | C12—C11—C16—C15 | 1.07 (17) |
| C7—O4—C6—C4 | −177.65 (9) | S1—C11—C16—C15 | −173.81 (8) |
| H··· | ||||
| N3—H02···O3 | 0.865 (18) | 2.456 (17) | 2.9775 (13) | 119.4 (13) |
| N3—H01···O2 | 0.852 (18) | 2.237 (17) | 2.8624 (13) | 130.3 (14) |
| N3—H02···N2i | 0.865 (18) | 2.206 (18) | 3.0216 (14) | 157.1 (15) |
| N3—H01···O1i | 0.852 (18) | 2.554 (17) | 3.0631 (13) | 119.3 (13) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H01⋯O1i | 0.852 (18) | 2.554 (17) | 3.0631 (13) | 119.3 (13) |
| N3—H01⋯O2 | 0.852 (18) | 2.237 (17) | 2.8624 (13) | 130.3 (14) |
| N3—H02⋯O3 | 0.865 (18) | 2.456 (17) | 2.9775 (13) | 119.4 (13) |
| N3—H02⋯N2i | 0.865 (18) | 2.206 (18) | 3.0216 (14) | 157.1 (15) |
Symmetry code: (i) .