Literature DB >> 24427020

Ethyl 5-amino-1-[(4-methyl-phen-yl)sulfon-yl]-1H-pyrazole-4-carboxyl-ate.

Abdel-Sattar S Hamad Elgazwy1, Ibrahim F Nassar2, Peter G Jones3.   

Abstract

In the title mol-ecule, C13H15N3O4S, the benzene and pyrazole rings are inclined to each other at 77.48 (3)°. Two amino H atoms are involved in bifurcated hydrogen bonds, viz. intra-molecular N-H⋯O and inter-molecular N-H⋯O(N). The inter-molecular hydrogen bonds link the mol-ecules related by translation in [100] into chains. A short distance of 3.680 (3) Å between the centroids of benzene and pyrazole rings from neighbouring mol-ecules shows the presence of π-π inter-actions, which link the hydrogen-bonded chains into layers parallel to the ab plane.

Entities:  

Year:  2013        PMID: 24427020      PMCID: PMC3884399          DOI: 10.1107/S1600536813019326

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background details and information on the synthesis, see: Elgazwy, Ismail et al. (2012 ▶); Elgazwy, Soliman et al. (2012 ▶).

Experimental

Crystal data

C13H15N3O4S M = 309.34 Monoclinic, a = 6.27869 (7) Å b = 15.43607 (12) Å c = 15.27141 (13) Å β = 96.2633 (9)° V = 1471.24 (2) Å3 Z = 4 Cu Kα radiation μ = 2.14 mm−1 T = 100 K 0.25 × 0.12 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur (Atlas, Nova) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.800, T max = 1.000 51079 measured reflections 3043 independent reflections 3035 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.074 S = 1.05 3043 reflections 201 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.39 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Siemens, 1994 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813019326/cv5421sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019326/cv5421Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019326/cv5421Isup3.ps Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019326/cv5421Isup5.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15N3O4SF(000) = 648
Mr = 309.34Dx = 1.397 Mg m3
Monoclinic, P21/nMelting point: 408 K
Hall symbol: P 2ynCu Kα radiation, λ = 1.54184 Å
a = 6.27869 (7) ÅCell parameters from 45300 reflections
b = 15.43607 (12) Åθ = 4.1–75.6°
c = 15.27141 (13) ŵ = 2.14 mm1
β = 96.2633 (9)°T = 100 K
V = 1471.24 (2) Å3Column, colourless
Z = 40.25 × 0.12 × 0.10 mm
Oxford Diffraction Xcalibur (Atlas, Nova) diffractometer3043 independent reflections
Radiation source: Nova (Cu) X-ray Source3035 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.024
Detector resolution: 10.3543 pixels mm-1θmax = 75.8°, θmin = 4.1°
ω scansh = −6→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −19→19
Tmin = 0.800, Tmax = 1.000l = −19→19
51079 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.074w = 1/[σ2(Fo2) + (0.0381P)2 + 0.6757P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.002
3043 reflectionsΔρmax = 0.34 e Å3
201 parametersΔρmin = −0.39 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0050 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)2.2393 (0.0028) x + 11.4616 (0.0048) y - 9.2011 (0.0057) z = 0.8382 (0.0021)* 0.0093 (0.0008) C11 * -0.0049 (0.0008) C12 * -0.0055 (0.0009) C13 * 0.0116 (0.0008) C14 * -0.0075 (0.0008) C15 * -0.0030 (0.0008) C16Rms deviation of fitted atoms = 0.0076- 1.0360 (0.0033) x + 12.4363 (0.0050) y + 8.9114 (0.0069) z = 7.4119 (0.0015)Angle to previous plane (with approximate e.s.d.) = 77.48 (0.03)* 0.0208 (0.0006) N1 * -0.0138 (0.0006) N2 * 0.0016 (0.0007) C3 * 0.0109 (0.0007) C4 * -0.0196 (0.0006) C5Rms deviation of fitted atoms = 0.0150
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.23094 (4)0.321249 (17)0.345762 (16)0.01627 (10)
O10.02102 (13)0.32316 (5)0.37347 (6)0.02126 (19)
O20.41682 (14)0.32016 (5)0.40895 (5)0.02177 (19)
O30.69858 (13)0.55623 (5)0.15472 (5)0.02182 (19)
O40.39748 (12)0.58590 (5)0.06499 (5)0.01882 (18)
N10.25242 (14)0.41272 (6)0.28744 (6)0.01595 (19)
N20.06923 (14)0.43553 (6)0.23043 (6)0.0178 (2)
C30.14389 (17)0.48527 (7)0.17142 (7)0.0168 (2)
H30.05560.51190.12450.020*
C40.36924 (17)0.49552 (7)0.18436 (7)0.0156 (2)
C50.43824 (17)0.44590 (7)0.25821 (7)0.0156 (2)
C60.50665 (17)0.54783 (7)0.13524 (7)0.0158 (2)
C70.52593 (19)0.63686 (7)0.01022 (7)0.0201 (2)
H7A0.63500.6000−0.01360.024*
H7B0.59990.68430.04490.024*
C80.3728 (2)0.67306 (8)−0.06355 (8)0.0272 (3)
H8A0.29890.6253−0.09660.041*
H8B0.45250.7073−0.10310.041*
H8C0.26720.7101−0.03900.041*
C110.24897 (18)0.23989 (7)0.26731 (7)0.0173 (2)
C120.07233 (19)0.22397 (8)0.20604 (8)0.0219 (2)
H12−0.06010.25260.21040.026*
C130.0935 (2)0.16557 (8)0.13850 (8)0.0248 (3)
H13−0.02580.15400.09640.030*
C140.2884 (2)0.12352 (8)0.13168 (8)0.0233 (3)
C150.46013 (19)0.13919 (8)0.19509 (8)0.0227 (2)
H150.59140.10940.19170.027*
C160.44368 (18)0.19753 (8)0.26327 (8)0.0200 (2)
H160.56220.20830.30610.024*
C170.3134 (3)0.06341 (9)0.05575 (9)0.0335 (3)
H17A0.36280.09640.00700.050*
H17B0.17510.03640.03620.050*
H17C0.41850.01840.07470.050*
N30.63513 (16)0.43168 (7)0.29848 (7)0.0214 (2)
H020.743 (3)0.4452 (11)0.2705 (11)0.033 (4)*
H010.655 (3)0.3949 (11)0.3402 (11)0.033 (4)*
U11U22U33U12U13U23
S10.01694 (16)0.01813 (15)0.01412 (15)0.00056 (9)0.00335 (10)0.00249 (9)
O10.0211 (4)0.0234 (4)0.0207 (4)0.0005 (3)0.0088 (3)0.0033 (3)
O20.0227 (4)0.0262 (4)0.0158 (4)−0.0007 (3)−0.0003 (3)0.0038 (3)
O30.0144 (4)0.0265 (4)0.0243 (4)−0.0008 (3)0.0014 (3)0.0056 (3)
O40.0169 (4)0.0225 (4)0.0170 (4)0.0001 (3)0.0019 (3)0.0058 (3)
N10.0135 (4)0.0179 (4)0.0166 (4)0.0008 (3)0.0021 (3)0.0024 (3)
N20.0137 (4)0.0199 (5)0.0196 (5)0.0021 (3)0.0007 (3)0.0024 (4)
C30.0157 (5)0.0177 (5)0.0172 (5)0.0015 (4)0.0022 (4)0.0008 (4)
C40.0149 (5)0.0166 (5)0.0155 (5)0.0013 (4)0.0021 (4)0.0000 (4)
C50.0153 (5)0.0168 (5)0.0150 (5)−0.0003 (4)0.0036 (4)−0.0014 (4)
C60.0164 (5)0.0156 (5)0.0154 (5)0.0023 (4)0.0025 (4)−0.0003 (4)
C70.0248 (6)0.0183 (5)0.0180 (5)−0.0018 (4)0.0065 (4)0.0025 (4)
C80.0379 (7)0.0241 (6)0.0196 (6)0.0024 (5)0.0029 (5)0.0056 (4)
C110.0194 (5)0.0161 (5)0.0168 (5)0.0014 (4)0.0040 (4)0.0028 (4)
C120.0203 (6)0.0217 (6)0.0235 (6)0.0034 (4)0.0007 (4)0.0006 (4)
C130.0291 (6)0.0235 (6)0.0210 (6)0.0021 (5)−0.0015 (5)0.0005 (5)
C140.0346 (7)0.0171 (5)0.0194 (6)0.0023 (5)0.0084 (5)0.0040 (4)
C150.0247 (6)0.0191 (5)0.0258 (6)0.0059 (4)0.0101 (5)0.0063 (4)
C160.0188 (5)0.0200 (5)0.0215 (6)0.0021 (4)0.0033 (4)0.0057 (4)
C170.0525 (9)0.0260 (6)0.0236 (6)0.0062 (6)0.0116 (6)−0.0008 (5)
N30.0149 (5)0.0295 (5)0.0196 (5)−0.0002 (4)0.0011 (4)0.0078 (4)
S1—O11.4279 (8)C14—C151.3898 (18)
S1—O21.4311 (8)C14—C171.5065 (17)
S1—N11.6827 (9)C15—C161.3890 (17)
S1—C111.7478 (11)C3—H30.9500
O3—C61.2163 (14)C7—H7A0.9900
O4—C61.3437 (13)C7—H7B0.9900
O4—C71.4546 (13)C8—H8A0.9800
N1—C51.3915 (14)C8—H8B0.9800
N1—N21.4093 (12)C8—H8C0.9800
N2—C31.3089 (14)C12—H120.9500
C3—C41.4160 (15)C13—H130.9500
C4—C51.3927 (15)C15—H150.9500
C4—C61.4492 (15)C16—H160.9500
C5—N31.3375 (14)C17—H17A0.9800
C7—C81.5067 (16)C17—H17B0.9800
C11—C121.3927 (16)C17—H17C0.9800
C11—C161.3937 (16)N3—H020.865 (18)
C12—C131.3870 (17)N3—H010.852 (18)
C13—C141.3990 (18)
O1—S1—O2120.77 (5)C15—C16—C11118.34 (11)
O1—S1—N1105.63 (5)N2—C3—H3123.3
O2—S1—N1105.08 (5)C4—C3—H3123.3
O1—S1—C11110.42 (5)O4—C7—H7A110.5
O2—S1—C11110.17 (5)C8—C7—H7A110.5
N1—S1—C11103.01 (5)O4—C7—H7B110.5
C6—O4—C7115.40 (8)C8—C7—H7B110.5
C5—N1—N2111.48 (8)H7A—C7—H7B108.6
C5—N1—S1126.66 (8)C7—C8—H8A109.5
N2—N1—S1115.43 (7)C7—C8—H8B109.5
C3—N2—N1104.03 (9)H8A—C8—H8B109.5
N2—C3—C4113.39 (10)C7—C8—H8C109.5
C5—C4—C3105.62 (9)H8A—C8—H8C109.5
C5—C4—C6125.13 (10)H8B—C8—H8C109.5
C3—C4—C6129.22 (10)C13—C12—H12120.6
N3—C5—N1123.87 (10)C11—C12—H12120.6
N3—C5—C4130.76 (10)C12—C13—H13119.6
N1—C5—C4105.34 (9)C14—C13—H13119.6
O3—C6—O4123.66 (10)C16—C15—H15119.3
O3—C6—C4124.24 (10)C14—C15—H15119.3
O4—C6—C4112.10 (9)C15—C16—H16120.8
O4—C7—C8106.37 (9)C11—C16—H16120.8
C12—C11—C16121.71 (11)C14—C17—H17A109.5
C12—C11—S1118.75 (9)C14—C17—H17B109.5
C16—C11—S1119.35 (9)H17A—C17—H17B109.5
C13—C12—C11118.71 (11)C14—C17—H17C109.5
C12—C13—C14120.83 (11)H17A—C17—H17C109.5
C15—C14—C13119.07 (11)H17B—C17—H17C109.5
C15—C14—C17120.36 (12)C5—N3—H02117.9 (11)
C13—C14—C17120.56 (12)C5—N3—H01120.2 (11)
C16—C15—C14121.31 (11)H02—N3—H01118.3 (15)
O1—S1—N1—C5169.64 (9)C5—C4—C6—O3−2.20 (18)
O2—S1—N1—C540.91 (10)C3—C4—C6—O3175.58 (11)
C11—S1—N1—C5−74.48 (10)C5—C4—C6—O4177.48 (10)
O1—S1—N1—N2−41.11 (9)C3—C4—C6—O4−4.74 (16)
O2—S1—N1—N2−169.84 (7)C6—O4—C7—C8−179.98 (9)
C11—S1—N1—N274.78 (8)O1—S1—C11—C1236.77 (10)
C5—N1—N2—C3−3.39 (12)O2—S1—C11—C12172.69 (9)
S1—N1—N2—C3−157.24 (8)N1—S1—C11—C12−75.64 (10)
N1—N2—C3—C41.50 (12)O1—S1—C11—C16−148.21 (9)
N2—C3—C4—C50.83 (13)O2—S1—C11—C16−12.29 (11)
N2—C3—C4—C6−177.28 (11)N1—S1—C11—C1699.39 (9)
N2—N1—C5—N3−177.82 (10)C16—C11—C12—C13−1.26 (17)
S1—N1—C5—N3−27.56 (16)S1—C11—C12—C13173.65 (9)
N2—N1—C5—C43.92 (12)C11—C12—C13—C14−0.18 (18)
S1—N1—C5—C4154.18 (8)C12—C13—C14—C151.74 (18)
C3—C4—C5—N3179.10 (12)C12—C13—C14—C17−177.06 (11)
C6—C4—C5—N3−2.68 (19)C13—C14—C15—C16−1.94 (17)
C3—C4—C5—N1−2.81 (12)C17—C14—C15—C16176.87 (11)
C6—C4—C5—N1175.41 (10)C14—C15—C16—C110.56 (17)
C7—O4—C6—O32.02 (15)C12—C11—C16—C151.07 (17)
C7—O4—C6—C4−177.65 (9)S1—C11—C16—C15−173.81 (8)
D—H···AD—HH···AD···AD—H···A
N3—H02···O30.865 (18)2.456 (17)2.9775 (13)119.4 (13)
N3—H01···O20.852 (18)2.237 (17)2.8624 (13)130.3 (14)
N3—H02···N2i0.865 (18)2.206 (18)3.0216 (14)157.1 (15)
N3—H01···O1i0.852 (18)2.554 (17)3.0631 (13)119.3 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H01⋯O1i 0.852 (18)2.554 (17)3.0631 (13)119.3 (13)
N3—H01⋯O20.852 (18)2.237 (17)2.8624 (13)130.3 (14)
N3—H02⋯O30.865 (18)2.456 (17)2.9775 (13)119.4 (13)
N3—H02⋯N2i 0.865 (18)2.206 (18)3.0216 (14)157.1 (15)

Symmetry code: (i) .

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Authors:  George M Sheldrick
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Authors:  A-S S H Elgazwy; N S M Ismail; S R Atta-Allah; M T Sarg; D H S Soliman; M Y Zaki; M A Elgamas
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3.  Three-dimensional quantitative structure activity relationship (QSAR) of cytotoxic active 3,5-diaryl-4,5-dihydropyrazole analogs: a comparative molecular field analysis (CoMFA) revisited study.

Authors:  Abdel-Sattar S Hamad Elgazwy; Daliah S Soliman; Saad R Atta-Allah; Diaa A Ibrahim
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  3 in total
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1.  A second polymorph of (Z)-3-amino-4-(2-phenyl-hydrazinyl-idene)-1H-pyrazol-5(4H)-one.

Authors:  Abdel-Sattar S Hamad Elgazwy; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-15
  1 in total

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