Literature DB >> 24427017

Methyl 2-[(tert-but-oxy-carbon-yl)amino]-3-(4-hy-droxy-phen-yl)propano-ate.

Xiaokun Li1.   

Abstract

In the title mol-ecule, C15H21NO5, the dihedral angle between the mean plane of the -N-C(=O)-O- group [maximum deviation = 0.002 (1) Å for the C atom] and the benzene ring is 82.2 (2)°. In the crystal, O-H⋯O and N-H⋯O hydrogen bonds connect the mol-ecules, forming a two-dimensional network parallel to (001).

Entities:  

Year:  2013        PMID: 24427017      PMCID: PMC3884495          DOI: 10.1107/S160053681301979X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related compounds, see: Sykes et al. (1999 ▶).

Experimental

Crystal data

C15H21NO5 M = 295.33 Orthorhombic, a = 8.7879 (8) Å b = 9.4844 (9) Å c = 18.9207 (18) Å V = 1577.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.55 × 0.49 × 0.45 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.962, T max = 0.989 9339 measured reflections 3636 independent reflections 3469 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.102 S = 1.03 3636 reflections 190 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶)’; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681301979X/lh5632sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301979X/lh5632Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301979X/lh5632Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H21NO5F(000) = 632
Mr = 295.33Dx = 1.244 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 9371 reflections
a = 8.7879 (8) Åθ = 1.0–27.6°
b = 9.4844 (9) ŵ = 0.09 mm1
c = 18.9207 (18) ÅT = 100 K
V = 1577.0 (3) Å3Block, colourless
Z = 40.55 × 0.49 × 0.45 mm
Bruker APEXII CCD diffractometer3636 independent reflections
Radiation source: fine-focus sealed tube3469 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.072
φ and ω scansθmax = 27.6°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→9
Tmin = 0.962, Tmax = 0.989k = −12→8
9339 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0581P)2 + 0.1712P] where P = (Fo2 + 2Fc2)/3
3636 reflections(Δ/σ)max = 0.008
190 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.04196 (17)1.13511 (15)0.18071 (7)0.0216 (3)
H1A−0.11231.14340.21720.026*
C2−0.03335 (16)1.01206 (15)0.14197 (7)0.0205 (3)
H2A−0.09780.93760.15310.025*
C30.07017 (15)0.99675 (14)0.08627 (7)0.0172 (3)
C40.16908 (15)1.10800 (15)0.07254 (7)0.0192 (3)
H4A0.24091.09910.03670.023*
C50.16250 (16)1.23229 (15)0.11142 (7)0.0200 (3)
H5A0.22971.30550.10160.024*
C60.05528 (16)1.24689 (14)0.16488 (7)0.0184 (3)
C70.06700 (17)0.86702 (15)0.04022 (7)0.0188 (3)
H7A0.13360.88230.00010.023*
H7B−0.03540.85470.02210.023*
C80.11575 (14)0.73007 (14)0.07772 (7)0.0166 (3)
H8A0.05730.72170.12160.020*
C90.33960 (15)0.64306 (14)0.13963 (7)0.0159 (3)
C100.59030 (15)0.56854 (15)0.18449 (7)0.0199 (3)
C110.5429 (2)0.5555 (2)0.26171 (8)0.0302 (3)
H11A0.54340.64710.28330.045*
H11B0.61310.49500.28610.045*
H11C0.44240.51610.26440.045*
C120.59178 (18)0.42703 (17)0.14678 (8)0.0280 (3)
H12A0.62250.44030.09850.042*
H12B0.49170.38660.14800.042*
H12C0.66210.36490.16990.042*
C130.74355 (17)0.64103 (19)0.17817 (9)0.0305 (3)
H13A0.77140.64800.12920.046*
H13B0.81900.58720.20300.046*
H13C0.73730.73380.19820.046*
C140.1469 (2)0.42237 (17)−0.04498 (8)0.0292 (3)
H14A0.23700.3749−0.06090.044*
H14B0.09430.4618−0.08480.044*
H14C0.08160.3563−0.02130.044*
C150.07176 (16)0.60783 (14)0.02939 (7)0.0180 (3)
N10.27499 (13)0.73700 (12)0.09567 (6)0.0170 (2)
H1B0.33010.80290.07780.020*
O10.04029 (13)1.36708 (11)0.20398 (5)0.0247 (2)
H1C0.10901.42200.19390.037*
O20.18880 (11)0.53485 (11)0.00379 (5)0.0221 (2)
O3−0.05943 (13)0.58394 (11)0.01458 (6)0.0254 (2)
O40.48955 (11)0.66726 (10)0.14566 (5)0.0186 (2)
O50.27010 (12)0.54940 (10)0.16994 (5)0.0204 (2)
U11U22U33U12U13U23
C10.0215 (7)0.0263 (7)0.0171 (6)−0.0023 (6)0.0044 (5)0.0007 (5)
C20.0205 (6)0.0205 (6)0.0206 (6)−0.0054 (5)0.0015 (5)0.0015 (5)
C30.0161 (6)0.0182 (6)0.0172 (6)0.0019 (5)−0.0039 (5)0.0011 (5)
C40.0145 (6)0.0235 (7)0.0195 (6)0.0009 (5)0.0020 (5)0.0009 (5)
C50.0176 (6)0.0208 (6)0.0217 (6)−0.0034 (5)0.0006 (5)0.0018 (5)
C60.0200 (6)0.0185 (6)0.0167 (5)−0.0002 (5)−0.0023 (5)0.0006 (5)
C70.0179 (6)0.0208 (6)0.0178 (6)0.0018 (5)−0.0025 (5)−0.0009 (5)
C80.0116 (6)0.0203 (6)0.0178 (6)−0.0004 (5)−0.0014 (5)−0.0005 (5)
C90.0152 (6)0.0171 (6)0.0155 (5)−0.0002 (5)0.0007 (5)−0.0038 (5)
C100.0145 (6)0.0248 (7)0.0206 (6)0.0027 (5)−0.0050 (5)0.0017 (5)
C110.0281 (8)0.0429 (9)0.0196 (6)0.0005 (7)−0.0040 (6)0.0012 (6)
C120.0281 (8)0.0264 (7)0.0296 (7)0.0064 (6)−0.0033 (6)0.0000 (6)
C130.0146 (7)0.0421 (9)0.0348 (8)−0.0032 (6)−0.0069 (6)0.0052 (7)
C140.0364 (9)0.0281 (7)0.0232 (7)−0.0031 (7)0.0026 (6)−0.0084 (6)
C150.0164 (6)0.0189 (6)0.0188 (6)−0.0003 (5)−0.0011 (5)0.0037 (5)
N10.0129 (5)0.0185 (5)0.0196 (5)−0.0023 (4)−0.0008 (4)0.0012 (4)
O10.0269 (5)0.0215 (5)0.0256 (5)−0.0057 (4)0.0063 (4)−0.0059 (4)
O20.0191 (5)0.0249 (5)0.0224 (5)−0.0012 (4)0.0020 (4)−0.0060 (4)
O30.0179 (5)0.0250 (5)0.0333 (5)−0.0016 (4)−0.0080 (4)−0.0020 (4)
O40.0123 (4)0.0210 (5)0.0223 (4)−0.0010 (3)−0.0038 (4)0.0031 (4)
O50.0175 (5)0.0214 (5)0.0221 (4)−0.0027 (4)0.0013 (4)0.0028 (4)
C1—C21.380 (2)C10—O41.4834 (16)
C1—C61.3942 (19)C10—C131.517 (2)
C1—H1A0.9300C10—C121.520 (2)
C2—C31.3997 (19)C10—C111.524 (2)
C2—H2A0.9300C11—H11A0.9600
C3—C41.3915 (19)C11—H11B0.9600
C3—C71.5079 (18)C11—H11C0.9600
C4—C51.391 (2)C12—H12A0.9600
C4—H4A0.9300C12—H12B0.9600
C5—C61.3893 (19)C12—H12C0.9600
C5—H5A0.9300C13—H13A0.9600
C6—O11.3653 (16)C13—H13B0.9600
C7—C81.5408 (19)C13—H13C0.9600
C7—H7A0.9700C14—O21.4578 (17)
C7—H7B0.9700C14—H14A0.9600
C8—N11.4415 (16)C14—H14B0.9600
C8—C151.5265 (18)C14—H14C0.9600
C8—H8A0.9800C15—O31.2079 (18)
C9—O51.2210 (17)C15—O21.3309 (17)
C9—O41.3424 (16)N1—H1B0.8600
C9—N11.3447 (17)O1—H1C0.8200
C2—C1—C6119.69 (13)O4—C10—C11111.29 (12)
C2—C1—H1A120.2C13—C10—C11110.79 (12)
C6—C1—H1A120.2C12—C10—C11112.37 (13)
C1—C2—C3121.55 (13)C10—C11—H11A109.5
C1—C2—H2A119.2C10—C11—H11B109.5
C3—C2—H2A119.2H11A—C11—H11B109.5
C4—C3—C2117.90 (12)C10—C11—H11C109.5
C4—C3—C7121.49 (12)H11A—C11—H11C109.5
C2—C3—C7120.51 (12)H11B—C11—H11C109.5
C5—C4—C3121.20 (12)C10—C12—H12A109.5
C5—C4—H4A119.4C10—C12—H12B109.5
C3—C4—H4A119.4H12A—C12—H12B109.5
C6—C5—C4119.85 (12)C10—C12—H12C109.5
C6—C5—H5A120.1H12A—C12—H12C109.5
C4—C5—H5A120.1H12B—C12—H12C109.5
O1—C6—C5122.90 (12)C10—C13—H13A109.5
O1—C6—C1117.34 (12)C10—C13—H13B109.5
C5—C6—C1119.75 (12)H13A—C13—H13B109.5
C3—C7—C8114.62 (10)C10—C13—H13C109.5
C3—C7—H7A108.6H13A—C13—H13C109.5
C8—C7—H7A108.6H13B—C13—H13C109.5
C3—C7—H7B108.6O2—C14—H14A109.5
C8—C7—H7B108.6O2—C14—H14B109.5
H7A—C7—H7B107.6H14A—C14—H14B109.5
N1—C8—C15114.93 (11)O2—C14—H14C109.5
N1—C8—C7109.87 (11)H14A—C14—H14C109.5
C15—C8—C7107.10 (10)H14B—C14—H14C109.5
N1—C8—H8A108.2O3—C15—O2123.75 (13)
C15—C8—H8A108.2O3—C15—C8121.54 (12)
C7—C8—H8A108.2O2—C15—C8114.67 (11)
O5—C9—O4125.14 (13)C9—N1—C8121.70 (11)
O5—C9—N1124.15 (13)C9—N1—H1B119.2
O4—C9—N1110.71 (12)C8—N1—H1B119.2
O4—C10—C13101.82 (11)C6—O1—H1C109.5
O4—C10—C12109.26 (11)C15—O2—C14114.55 (12)
C13—C10—C12110.83 (13)C9—O4—C10121.33 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O3i0.862.273.0583 (16)153
O1—H1C···O5ii0.821.922.7356 (15)180
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1B⋯O3i 0.862.273.0583 (16)153
O1—H1C⋯O5ii 0.821.922.7356 (15)180

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-Substituted 2-(2,6-dinitrophenylamino)propanamides: novel prodrugs that release a primary amine via nitroreduction and intramolecular cyclization.

Authors:  B M Sykes; G J Atwell; A Hogg; W R Wilson; C J O'Connor; W A Denny
Journal:  J Med Chem       Date:  1999-02-11       Impact factor: 7.446

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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