Literature DB >> 24427009

catena-Poly[[[2-(1,3-thia-zol-4-yl)-1H-benzimidazole]-manganese(II)]-μ-oxalato].

Peng Liang1, Li-Ning Huang2, Xian-Hong Yin1.   

Abstract

In the title compound, [Mn(C2O4)(C10H7N3S)] n , the Mn(II) cation is chelated by one 2-(1,3-thia-zol-4-yl)-1H-benzimidazole ligand and two oxalate anions in a distorted N2O4 octa-hedral geometry. Two independent oxalate anions are located on individual inversion centers and bridge the Mn(II) cations into a polymeric chain running along [101]. The thia-zole ring is approximately coplanar with the benzimidazole ring system [dihedral angle = 4.19 (9)°]. In the crystal, classical N-H⋯O hydrogen bonds and weak C-H⋯O hydrogen bonds link the polymeric chains into a three-dimensional supra-molecular architecture.

Entities:  

Year:  2013        PMID: 24427009      PMCID: PMC3884504          DOI: 10.1107/S1600536813023428

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of thia­bendazole compounds, see: Yu et al. (2002 ▶); Devereux et al. (2004 ▶). For related structures, see: Wisniewski et al. (2001 ▶); Jean et al. (2002 ▶).

Experimental

Crystal data

[Mn(C2O4)(C10H7N3S)] M = 344.21 Monoclinic, a = 9.374 (2) Å b = 17.834 (5) Å c = 8.926 (2) Å β = 113.500 (3)° V = 1368.5 (6) Å3 Z = 4 Mo Kα radiation μ = 1.14 mm−1 T = 296 K 0.19 × 0.15 × 0.12 mm

Data collection

Bruker SMART 1000 diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.813, T max = 0.876 7273 measured reflections 2412 independent reflections 2221 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.069 S = 1.08 2412 reflections 190 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813023428/xu5729sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813023428/xu5729Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813023428/xu5729Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C2O4)(C10H7N3S)]F(000) = 692
Mr = 344.21Dx = 1.671 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5023 reflections
a = 9.374 (2) Åθ = 2.4–28.3°
b = 17.834 (5) ŵ = 1.14 mm1
c = 8.926 (2) ÅT = 296 K
β = 113.500 (3)°Block, colorless
V = 1368.5 (6) Å30.19 × 0.15 × 0.12 mm
Z = 4
Bruker SMART 1000 diffractometer2412 independent reflections
Radiation source: fine-focus sealed tube2221 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
phi and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −7→11
Tmin = 0.813, Tmax = 0.876k = −21→20
7273 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0339P)2 + 0.5684P] where P = (Fo2 + 2Fc2)/3
2412 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.28290 (3)0.932763 (14)0.20300 (3)0.03109 (11)
S10.64896 (7)0.83770 (4)−0.00986 (9)0.0624 (2)
O10.39555 (17)0.91664 (7)0.47096 (16)0.0433 (4)
O20.43698 (18)1.03068 (8)0.29932 (16)0.0484 (4)
O30.17776 (14)0.99693 (8)−0.02014 (16)0.0376 (3)
O40.05151 (15)0.95656 (8)0.18979 (16)0.0377 (3)
N10.45900 (19)0.87876 (9)0.1125 (2)0.0413 (4)
N20.22949 (18)0.81054 (8)0.17676 (18)0.0320 (3)
N30.2776 (2)0.69534 (9)0.1121 (2)0.0397 (4)
H30.32140.65960.08140.048*
C10.0364 (2)1.01176 (9)−0.0610 (2)0.0304 (4)
C20.3161 (2)0.76883 (10)0.1233 (2)0.0322 (4)
C30.1257 (2)0.76095 (10)0.1997 (2)0.0345 (4)
C40.4377 (2)0.80249 (11)0.0832 (2)0.0356 (4)
C50.4889 (2)0.96704 (10)0.5512 (2)0.0336 (4)
C60.1543 (2)0.68852 (11)0.1592 (2)0.0408 (5)
C70.0076 (2)0.77466 (13)0.2539 (3)0.0445 (5)
H7−0.01160.82250.28310.053*
C80.0644 (3)0.62731 (13)0.1659 (3)0.0615 (7)
H80.08250.57920.13720.074*
C90.5322 (3)0.77105 (13)0.0185 (3)0.0480 (5)
H90.53310.7205−0.00670.058*
C10−0.0793 (3)0.71361 (15)0.2620 (3)0.0602 (7)
H10−0.15830.72060.29860.072*
C11−0.0529 (3)0.64235 (16)0.2177 (4)0.0697 (8)
H11−0.11640.60330.22300.084*
C120.5678 (3)0.90352 (14)0.0683 (3)0.0537 (6)
H120.59820.95350.07910.064*
U11U22U33U12U13U23
Mn10.02973 (17)0.02287 (16)0.03696 (18)−0.00105 (10)0.00938 (13)−0.00085 (10)
S10.0522 (4)0.0722 (4)0.0788 (4)0.0189 (3)0.0429 (3)0.0219 (3)
O10.0519 (9)0.0291 (7)0.0401 (7)−0.0171 (6)0.0090 (6)0.0016 (6)
O20.0616 (9)0.0343 (8)0.0363 (8)−0.0179 (7)0.0058 (7)0.0050 (6)
O30.0294 (7)0.0425 (8)0.0417 (7)0.0018 (6)0.0150 (6)0.0054 (6)
O40.0372 (7)0.0387 (7)0.0376 (7)0.0065 (6)0.0152 (6)0.0074 (6)
N10.0368 (9)0.0326 (9)0.0584 (11)0.0025 (7)0.0230 (8)0.0052 (8)
N20.0325 (8)0.0247 (8)0.0367 (8)−0.0019 (6)0.0115 (6)−0.0021 (6)
N30.0472 (10)0.0238 (8)0.0445 (9)0.0038 (7)0.0144 (8)−0.0033 (7)
C10.0323 (10)0.0224 (8)0.0359 (10)−0.0023 (7)0.0130 (8)−0.0040 (7)
C20.0340 (10)0.0263 (9)0.0327 (9)0.0030 (7)0.0095 (8)−0.0013 (7)
C30.0330 (10)0.0316 (10)0.0335 (9)−0.0042 (8)0.0074 (8)0.0026 (7)
C40.0340 (10)0.0345 (10)0.0357 (10)0.0069 (8)0.0112 (8)0.0025 (8)
C50.0364 (10)0.0219 (9)0.0385 (10)−0.0045 (7)0.0106 (8)0.0016 (8)
C60.0419 (11)0.0293 (10)0.0425 (11)−0.0030 (8)0.0077 (9)0.0046 (8)
C70.0372 (11)0.0505 (13)0.0446 (11)0.0007 (9)0.0149 (9)0.0096 (9)
C80.0638 (16)0.0319 (12)0.0713 (16)−0.0098 (11)0.0086 (13)0.0109 (11)
C90.0470 (12)0.0478 (13)0.0505 (12)0.0133 (10)0.0208 (10)0.0022 (10)
C100.0439 (13)0.0677 (17)0.0672 (15)−0.0024 (12)0.0203 (11)0.0300 (13)
C110.0503 (15)0.0589 (17)0.0879 (19)−0.0153 (12)0.0149 (14)0.0341 (14)
C120.0404 (12)0.0462 (12)0.0781 (16)0.0069 (10)0.0276 (11)0.0182 (12)
Mn1—O12.2146 (15)C1—O4ii1.251 (2)
Mn1—O22.2100 (14)C1—C1ii1.556 (4)
Mn1—O32.1640 (14)C2—C41.453 (3)
Mn1—O42.1667 (15)C3—C61.396 (3)
Mn1—N12.3170 (17)C3—C71.396 (3)
Mn1—N22.2279 (16)C4—C91.357 (3)
S1—C121.694 (3)C5—O2i1.235 (2)
S1—C91.702 (2)C5—C5i1.553 (3)
O1—C51.260 (2)C6—C81.395 (3)
O2—C5i1.235 (2)C7—C101.378 (3)
O3—C11.254 (2)C7—H70.9300
O4—C1ii1.251 (2)C8—C111.378 (4)
N1—C121.308 (3)C8—H80.9300
N1—C41.384 (3)C9—H90.9300
N2—C21.323 (2)C10—C111.382 (4)
N2—C31.389 (2)C10—H100.9300
N3—C21.353 (2)C11—H110.9300
N3—C61.384 (3)C12—H120.9300
N3—H30.8600
O3—Mn1—O476.57 (5)N2—C2—C4120.73 (16)
O3—Mn1—O285.83 (5)N3—C2—C4126.47 (17)
O4—Mn1—O2110.56 (6)N2—C3—C6109.46 (17)
O3—Mn1—O1155.34 (5)N2—C3—C7129.70 (18)
O4—Mn1—O196.90 (5)C6—C3—C7120.84 (19)
O2—Mn1—O174.11 (5)C9—C4—N1114.63 (19)
O3—Mn1—N2114.83 (5)C9—C4—C2130.04 (19)
O4—Mn1—N290.45 (6)N1—C4—C2115.32 (16)
O2—Mn1—N2153.97 (6)O2i—C5—O1127.00 (17)
O1—Mn1—N288.68 (5)O2i—C5—C5i117.4 (2)
O3—Mn1—N191.44 (6)O1—C5—C5i115.6 (2)
O4—Mn1—N1154.07 (6)N3—C6—C8132.4 (2)
O2—Mn1—N191.04 (6)N3—C6—C3105.50 (16)
O1—Mn1—N1102.91 (6)C8—C6—C3122.1 (2)
N2—Mn1—N173.63 (6)C10—C7—C3116.5 (2)
C12—S1—C990.09 (11)C10—C7—H7121.7
C5—O1—Mn1116.44 (11)C3—C7—H7121.7
C5i—O2—Mn1116.44 (12)C11—C8—C6116.0 (2)
C1—O3—Mn1114.82 (12)C11—C8—H8122.0
C1ii—O4—Mn1114.64 (12)C6—C8—H8122.0
C12—N1—C4110.24 (18)C4—C9—S1110.03 (17)
C12—N1—Mn1135.57 (15)C4—C9—H9125.0
C4—N1—Mn1113.89 (12)S1—C9—H9125.0
C2—N2—C3105.18 (15)C7—C10—C11122.3 (2)
C2—N2—Mn1116.34 (12)C7—C10—H10118.8
C3—N2—Mn1138.48 (13)C11—C10—H10118.8
C2—N3—C6107.05 (16)C8—C11—C10122.2 (2)
C2—N3—H3126.5C8—C11—H11118.9
C6—N3—H3126.5C10—C11—H11118.9
O4ii—C1—O3126.52 (17)N1—C12—S1115.01 (18)
O4ii—C1—C1ii116.9 (2)N1—C12—H12122.5
O3—C1—C1ii116.54 (19)S1—C12—H12122.5
N2—C2—N3112.80 (17)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1iii0.861.962.812 (2)170
C12—H12···O3iv0.932.523.137 (3)124
Table 1

Selected bond lengths (Å)

Mn1—O12.2146 (15)
Mn1—O22.2100 (14)
Mn1—O32.1640 (14)
Mn1—O42.1667 (15)
Mn1—N12.3170 (17)
Mn1—N22.2279 (16)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O1i 0.861.962.812 (2)170
C12—H12⋯O3ii 0.932.523.137 (3)124

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, antimicrobial activity and chemotherapeutic potential of inorganic derivatives of 2-(4'-thiazolyl)benzimidazole[thiabendazole]: X-ray crystal structures of [Cu(TBZH)2Cl]Cl.H2O.EtOH and TBZH2NO3 (TBZH=thiabendazole).

Authors:  Michael Devereux; Malachy McCann; Denis O Shea; Rachel Kelly; Denise Egan; Carol Deegan; Kevin Kavanagh; Vickie McKee; Gregory Finn
Journal:  J Inorg Biochem       Date:  2004-06       Impact factor: 4.155

3.  Synthesis, Characterization and Antiproliferative Activity of the Co(II), Ni(II), Cu(II), Pd(II) and Pt(II) Complexes of 2-(4-Thiazolyl)Benzimidazole (Thiabendazole).

Authors:  M Z Wisniewski; T Glowiak; A Opolski; J Wietrzyk
Journal:  Met Based Drugs       Date:  2001
  3 in total

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