Literature DB >> 24427004

trans-Di-fluorido-tetra-kis-(pyridine-κN)chromium(III) perchlorate from synchrotron radiation.

Dohyun Moon1, Jong-Ha Choi2.   

Abstract

The are two independent complex cations in the title salt, [CrF2(C5H5N)4]ClO4, each located on a centre of inversion, as well as an independent perchlorate counter-ion. The complex cations adopt slightly distorted octa-hedral coordination environments around the Cr(III) ion, defined by four pyridine (py) N atoms in the equatorial plane and two F(-) ligands in the axial positions; intra-molecular C-H⋯F contacts are noted. The mean Cr-N(py) and Cr-F bond lengths are 2.088 (6) and 1.8559 (10) Å, respectively. The three-dimensional architecture is sustained by hydrogen bonds involving the pyridine C-H groups as donors, and F and O atoms as acceptors.

Entities:  

Year:  2013        PMID: 24427004      PMCID: PMC3884409          DOI: 10.1107/S1600536813023052

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to geometric isomerism in transition metal comlexes, see: Knight & Scott (2003 ▶); Ronconi & Sadler (2007 ▶). For the synthesis, see: Glerup et al. (1970 ▶). For the structure of trans-[Cr(py)4F2]PF6, see: Fochi et al. (1991 ▶).

Experimental

Crystal data

[CrF2(C5H5N)4]ClO4 M = 505.85 Triclinic, a = 9.5690 (19) Å b = 10.615 (2) Å c = 12.663 (3) Å α = 68.46 (3)° β = 68.31 (3)° γ = 79.38 (3)° V = 1109.9 (5) Å3 Z = 2 Synchrotron radiation λ = 0.63001 Å μ = 0.49 mm−1 T = 99 K 0.03 × 0.03 × 0.02 mm

Data collection

ADSC Q210 CCD area-detector Absorption correction: empirical (HKL3000sm; Otwinowski & Minor, 1997 ▶) T min = 0.985, T max = 0.993 11523 measured reflections 5842 independent reflections 4912 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.099 S = 1.05 5842 reflections 293 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.61 e Å−3 Data collection: PAL ADSC Quantum-210 ADX Software (Arvai & Nielsen, 1983 ▶); cell refinement: HKL3000sm (Otwinowski & Minor, 1997 ▶); data reduction: HKL3000sm; program(s) used to solve structure: SHELX-2013-XS (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELX-2013-XL (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2007 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813023052/tk5248sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813023052/tk5248Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CrF2(C5H5N)4]ClO4Z = 2
Mr = 505.85F(000) = 518
Triclinic, P1Dx = 1.514 Mg m3
Hall symbol: -P 1Synchrotron radiation, λ = 0.63001 Å
a = 9.5690 (19) ÅCell parameters from 33119 reflections
b = 10.615 (2) Åθ = 0.4–33.6°
c = 12.663 (3) ŵ = 0.49 mm1
α = 68.46 (3)°T = 99 K
β = 68.31 (3)°Pink, plate
γ = 79.38 (3)°0.03 × 0.03 × 0.02 mm
V = 1109.9 (5) Å3
ADSC Q210 CCD area-detector diffractometer4912 reflections with I > 2σ(I)
Radiation source: PLSII 2D bending magnetRint = 0.020
ω scanθmax = 26.0°, θmin = 1.6°
Absorption correction: empirical (using intensity measurements) (HKL3000sm; Otwinowski & Minor, 1997)h = −13→13
Tmin = 0.985, Tmax = 0.993k = −14→14
11523 measured reflectionsl = −17→17
5842 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.036w = 1/[σ2(Fo2) + (0.0543P)2 + 0.5188P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.099(Δ/σ)max = 0.001
S = 1.05Δρmax = 0.51 e Å3
5842 reflectionsΔρmin = −0.61 e Å3
293 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.062 (4)
Experimental. Since the Pohang Accelerator Laboratory goniostat has only one omega-axis, diffrn_measured_fraction_theta_full is not fully covered as 0.944, especially for the low symmetry such as a triclinic system. As this is an inherent problem, other command and option (such as OMIT) were not helpful to improve the completeness.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cr10.00001.00000.00000.01263 (9)
F10.01103 (10)1.14193 (9)0.04859 (8)0.01655 (19)
N1−0.16449 (15)0.91455 (13)0.16450 (12)0.0144 (2)
C1−0.24067 (17)0.99130 (16)0.23459 (14)0.0160 (3)
H1−0.21771.08360.20770.019*
C2−0.35141 (18)0.94021 (17)0.34453 (15)0.0184 (3)
H2−0.40360.99690.39180.022*
C3−0.38521 (19)0.80573 (18)0.38478 (15)0.0206 (3)
H3−0.45940.76820.46050.025*
C4−0.30797 (19)0.72648 (17)0.31164 (16)0.0213 (3)
H4−0.32940.63410.33660.026*
C5−0.19964 (18)0.78444 (16)0.20218 (15)0.0177 (3)
H5−0.14840.73070.15200.021*
N20.17550 (15)0.89172 (13)0.06286 (12)0.0150 (3)
C60.24772 (18)0.94873 (16)0.10540 (14)0.0182 (3)
H60.21311.03620.11200.022*
C70.37130 (19)0.88404 (18)0.14009 (16)0.0212 (3)
H70.42100.92710.16910.025*
C80.42122 (19)0.75607 (18)0.13180 (15)0.0214 (3)
H80.50520.70970.15560.026*
C90.34678 (19)0.69668 (17)0.08827 (16)0.0210 (3)
H90.37890.60890.08170.025*
C100.22513 (18)0.76705 (16)0.05457 (15)0.0181 (3)
H100.17460.72620.02450.022*
Cr20.00001.00000.50000.01280 (9)
F2−0.15818 (10)1.01373 (10)0.44431 (8)0.01706 (19)
N30.08874 (14)0.82597 (13)0.45187 (11)0.0148 (3)
C110.02042 (18)0.77691 (17)0.40054 (15)0.0179 (3)
H11−0.06460.82670.38050.022*
C120.06960 (19)0.65643 (17)0.37590 (15)0.0204 (3)
H120.01850.62420.34000.024*
C130.19391 (19)0.58355 (17)0.40415 (15)0.0209 (3)
H130.23000.50100.38750.025*
C140.26469 (19)0.63353 (17)0.45721 (15)0.0205 (3)
H140.35020.58550.47760.025*
C150.20934 (18)0.75428 (17)0.48022 (14)0.0179 (3)
H150.25780.78770.51710.022*
N40.12228 (15)1.12831 (14)0.33344 (12)0.0157 (3)
C160.05298 (18)1.21171 (16)0.25660 (14)0.0177 (3)
H16−0.05181.20520.27580.021*
C170.1294 (2)1.30722 (17)0.14993 (15)0.0215 (3)
H170.07731.36600.09760.026*
C180.2822 (2)1.31577 (18)0.12077 (16)0.0246 (4)
H180.33681.38050.04830.030*
C190.3546 (2)1.2278 (2)0.19953 (17)0.0263 (4)
H190.46001.23040.18090.032*
C200.27139 (18)1.13681 (18)0.30494 (15)0.0211 (3)
H200.32081.07810.35930.025*
Cl1P0.64390 (4)0.40483 (4)0.24420 (3)0.01718 (10)
O1P0.53210 (15)0.45637 (14)0.33397 (13)0.0305 (3)
O2P0.5964 (2)0.44001 (15)0.14139 (13)0.0374 (4)
O3P0.66002 (17)0.26002 (13)0.29401 (13)0.0304 (3)
O4P0.78435 (15)0.46338 (17)0.20959 (16)0.0387 (4)
U11U22U33U12U13U23
Cr10.01311 (16)0.01227 (16)0.01356 (16)0.00203 (12)−0.00396 (13)−0.00714 (12)
F10.0183 (4)0.0153 (4)0.0190 (4)0.0016 (3)−0.0062 (4)−0.0100 (3)
N10.0146 (6)0.0150 (6)0.0150 (6)0.0008 (5)−0.0050 (5)−0.0071 (5)
C10.0153 (7)0.0167 (7)0.0178 (7)0.0020 (5)−0.0060 (6)−0.0086 (6)
C20.0142 (7)0.0245 (8)0.0184 (7)0.0011 (6)−0.0046 (6)−0.0110 (6)
C30.0161 (7)0.0263 (8)0.0183 (7)−0.0041 (6)−0.0036 (6)−0.0067 (6)
C40.0225 (8)0.0195 (8)0.0223 (8)−0.0046 (6)−0.0066 (7)−0.0063 (6)
C50.0197 (7)0.0157 (7)0.0195 (7)0.0000 (6)−0.0065 (6)−0.0081 (6)
N20.0149 (6)0.0152 (6)0.0149 (6)0.0021 (5)−0.0042 (5)−0.0069 (5)
C60.0188 (7)0.0180 (7)0.0182 (7)0.0018 (6)−0.0054 (6)−0.0085 (6)
C70.0196 (7)0.0241 (8)0.0227 (8)0.0014 (6)−0.0089 (7)−0.0101 (6)
C80.0176 (7)0.0234 (8)0.0212 (8)0.0047 (6)−0.0068 (6)−0.0075 (6)
C90.0198 (7)0.0193 (7)0.0230 (8)0.0061 (6)−0.0067 (7)−0.0098 (6)
C100.0185 (7)0.0170 (7)0.0188 (7)0.0022 (6)−0.0053 (6)−0.0083 (6)
Cr20.00999 (15)0.01573 (17)0.01295 (16)0.00214 (12)−0.00418 (12)−0.00595 (12)
F20.0138 (4)0.0204 (5)0.0191 (4)0.0021 (3)−0.0077 (4)−0.0080 (4)
N30.0133 (6)0.0163 (6)0.0135 (6)0.0011 (5)−0.0033 (5)−0.0057 (5)
C110.0153 (7)0.0199 (7)0.0187 (7)0.0013 (6)−0.0056 (6)−0.0076 (6)
C120.0190 (7)0.0213 (8)0.0225 (8)0.0003 (6)−0.0065 (6)−0.0101 (6)
C130.0200 (7)0.0180 (7)0.0218 (8)0.0023 (6)−0.0035 (6)−0.0084 (6)
C140.0172 (7)0.0214 (8)0.0198 (7)0.0056 (6)−0.0053 (6)−0.0072 (6)
C150.0146 (7)0.0220 (8)0.0176 (7)0.0033 (6)−0.0055 (6)−0.0087 (6)
N40.0140 (6)0.0183 (6)0.0149 (6)0.0007 (5)−0.0035 (5)−0.0076 (5)
C160.0175 (7)0.0193 (7)0.0165 (7)0.0023 (6)−0.0056 (6)−0.0077 (6)
C170.0266 (8)0.0191 (7)0.0178 (7)0.0018 (6)−0.0068 (7)−0.0068 (6)
C180.0272 (9)0.0224 (8)0.0196 (8)−0.0054 (7)−0.0003 (7)−0.0073 (6)
C190.0183 (8)0.0327 (10)0.0242 (8)−0.0051 (7)−0.0013 (7)−0.0090 (7)
C200.0149 (7)0.0275 (8)0.0194 (7)−0.0010 (6)−0.0046 (6)−0.0073 (6)
Cl1P0.01680 (17)0.01445 (17)0.02051 (18)0.00369 (12)−0.00615 (14)−0.00815 (13)
O1P0.0234 (6)0.0276 (7)0.0369 (8)0.0019 (5)0.0019 (6)−0.0201 (6)
O2P0.0580 (10)0.0308 (8)0.0269 (7)−0.0049 (7)−0.0253 (7)−0.0007 (6)
O3P0.0427 (8)0.0139 (6)0.0382 (8)0.0093 (5)−0.0219 (7)−0.0092 (5)
O4P0.0178 (6)0.0411 (8)0.0597 (10)−0.0049 (6)−0.0017 (7)−0.0291 (8)
Cr1—F1i1.8566 (10)Cr2—N42.0799 (17)
Cr1—F11.8566 (10)Cr2—N4ii2.0800 (17)
Cr1—N1i2.0867 (16)Cr2—N3ii2.0908 (14)
Cr1—N12.0867 (16)Cr2—N32.0908 (14)
Cr1—N2i2.0929 (15)N3—C111.345 (2)
Cr1—N22.0929 (15)N3—C151.350 (2)
N1—C11.3478 (19)C11—C121.385 (2)
N1—C51.348 (2)C11—H110.9500
C1—C21.386 (2)C12—C131.383 (2)
C1—H10.9500C12—H120.9500
C2—C31.384 (2)C13—C141.386 (3)
C2—H20.9500C13—H130.9500
C3—C41.396 (2)C14—C151.385 (2)
C3—H30.9500C14—H140.9500
C4—C51.386 (2)C15—H150.9500
C4—H40.9500N4—C161.341 (2)
C5—H50.9500N4—C201.348 (2)
N2—C61.343 (2)C16—C171.387 (2)
N2—C101.350 (2)C16—H160.9500
C6—C71.388 (2)C17—C181.382 (3)
C6—H60.9500C17—H170.9500
C7—C81.383 (2)C18—C191.391 (3)
C7—H70.9500C18—H180.9500
C8—C91.386 (3)C19—C201.378 (3)
C8—H80.9500C19—H190.9500
C9—C101.381 (2)C20—H200.9500
C9—H90.9500Cl1P—O4P1.4342 (15)
C10—H100.9500Cl1P—O3P1.4342 (14)
Cr2—F2ii1.8552 (10)Cl1P—O2P1.4351 (15)
Cr2—F21.8552 (10)Cl1P—O1P1.4416 (14)
F1i—Cr1—F1180.0F2ii—Cr2—N4ii90.36 (6)
F1i—Cr1—N1i90.52 (5)F2—Cr2—N4ii89.64 (6)
F1—Cr1—N1i89.48 (5)N4—Cr2—N4ii180.0
F1i—Cr1—N189.48 (5)F2ii—Cr2—N3ii90.31 (5)
F1—Cr1—N190.52 (5)F2—Cr2—N3ii89.69 (5)
N1i—Cr1—N1180.00 (7)N4—Cr2—N3ii87.08 (6)
F1i—Cr1—N2i90.40 (5)N4ii—Cr2—N3ii92.92 (6)
F1—Cr1—N2i89.60 (5)F2ii—Cr2—N389.68 (5)
N1i—Cr1—N2i92.68 (6)F2—Cr2—N390.32 (5)
N1—Cr1—N2i87.32 (6)N4—Cr2—N392.92 (6)
F1i—Cr1—N289.60 (5)N4ii—Cr2—N387.08 (6)
F1—Cr1—N290.40 (5)N3ii—Cr2—N3180.0
N1i—Cr1—N287.32 (6)C11—N3—C15118.33 (14)
N1—Cr1—N292.68 (6)C11—N3—Cr2120.91 (11)
N2i—Cr1—N2180.0C15—N3—Cr2120.55 (11)
C1—N1—C5118.53 (14)N3—C11—C12122.38 (15)
C1—N1—Cr1119.68 (11)N3—C11—H11118.8
C5—N1—Cr1121.77 (11)C12—C11—H11118.8
N1—C1—C2122.25 (15)C13—C12—C11119.25 (16)
N1—C1—H1118.9C13—C12—H12120.4
C2—C1—H1118.9C11—C12—H12120.4
C3—C2—C1119.33 (15)C12—C13—C14118.63 (15)
C3—C2—H2120.3C12—C13—H13120.7
C1—C2—H2120.3C14—C13—H13120.7
C2—C3—C4118.55 (15)C15—C14—C13119.30 (15)
C2—C3—H3120.7C15—C14—H14120.4
C4—C3—H3120.7C13—C14—H14120.4
C5—C4—C3119.09 (16)N3—C15—C14122.11 (15)
C5—C4—H4120.5N3—C15—H15118.9
C3—C4—H4120.5C14—C15—H15118.9
N1—C5—C4122.22 (15)C16—N4—C20118.68 (15)
N1—C5—H5118.9C16—N4—Cr2120.86 (11)
C4—C5—H5118.9C20—N4—Cr2120.25 (12)
C6—N2—C10118.41 (14)N4—C16—C17122.13 (16)
C6—N2—Cr1120.40 (10)N4—C16—H16118.9
C10—N2—Cr1121.05 (11)C17—C16—H16118.9
N2—C6—C7122.17 (15)C18—C17—C16119.13 (17)
N2—C6—H6118.9C18—C17—H17120.4
C7—C6—H6118.9C16—C17—H17120.4
C8—C7—C6119.12 (16)C17—C18—C19118.76 (17)
C8—C7—H7120.4C17—C18—H18120.6
C6—C7—H7120.4C19—C18—H18120.6
C7—C8—C9118.91 (16)C20—C19—C18119.08 (17)
C7—C8—H8120.5C20—C19—H19120.5
C9—C8—H8120.5C18—C19—H19120.5
C10—C9—C8119.00 (15)N4—C20—C19122.20 (17)
C10—C9—H9120.5N4—C20—H20118.9
C8—C9—H9120.5C19—C20—H20118.9
N2—C10—C9122.39 (16)O4P—Cl1P—O3P110.13 (10)
N2—C10—H10118.8O4P—Cl1P—O2P109.84 (11)
C9—C10—H10118.8O3P—Cl1P—O2P109.44 (9)
F2ii—Cr2—F2180.0O4P—Cl1P—O1P109.02 (9)
F2ii—Cr2—N489.64 (6)O3P—Cl1P—O1P108.90 (9)
F2—Cr2—N490.36 (6)O2P—Cl1P—O1P109.50 (10)
C5—N1—C1—C21.2 (2)C15—N3—C11—C12−0.1 (2)
Cr1—N1—C1—C2179.81 (12)Cr2—N3—C11—C12−175.00 (12)
N1—C1—C2—C30.3 (2)N3—C11—C12—C13−0.4 (3)
C1—C2—C3—C4−1.2 (2)C11—C12—C13—C140.4 (3)
C2—C3—C4—C50.5 (3)C12—C13—C14—C150.0 (2)
C1—N1—C5—C4−1.9 (2)C11—N3—C15—C140.5 (2)
Cr1—N1—C5—C4179.55 (13)Cr2—N3—C15—C14175.44 (12)
C3—C4—C5—N11.0 (3)C13—C14—C15—N3−0.5 (2)
C10—N2—C6—C70.4 (2)C20—N4—C16—C17−0.9 (2)
Cr1—N2—C6—C7−175.43 (12)Cr2—N4—C16—C17173.85 (12)
N2—C6—C7—C8−0.6 (3)N4—C16—C17—C180.9 (2)
C6—C7—C8—C90.4 (3)C16—C17—C18—C190.1 (2)
C7—C8—C9—C100.0 (3)C17—C18—C19—C20−1.2 (3)
C6—N2—C10—C90.1 (2)C16—N4—C20—C19−0.3 (2)
Cr1—N2—C10—C9175.84 (12)Cr2—N4—C20—C19−175.00 (14)
C8—C9—C10—N2−0.2 (3)C18—C19—C20—N41.3 (3)
D—H···AD—HH···AD···AD—H···A
C1—H1···F10.952.362.892 (2)115
C6—H6···F10.952.312.874 (2)118
C11—H11···F20.952.322.879 (2)117
C16—H16···F20.952.392.915 (2)115
C14—H14···O1P0.952.613.154 (2)117
C9—H9···O2P0.952.633.320 (3)130
C1—H1···O3Piii0.952.413.107 (2)130
C4—H4···O1Piv0.952.513.368 (2)150
C5—H5···F1i0.952.382.900 (2)114
C10—H10···F1i0.952.312.863 (2)117
C15—H15···F2ii0.952.292.856 (2)117
C20—H20···F2ii0.952.342.860 (2)114
C15—H15···O3Pv0.952.643.466 (2)146
C19—H19···O2Pvi0.952.583.227 (3)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1⋯F10.952.362.892 (2)115
C6—H6⋯F10.952.312.874 (2)118
C11—H11⋯F20.952.322.879 (2)117
C16—H16⋯F20.952.392.915 (2)115
C14—H14⋯O1P 0.952.613.154 (2)117
C9—H9⋯O2P 0.952.633.320 (3)130
C1—H1⋯O3P i 0.952.413.107 (2)130
C4—H4⋯O1P ii 0.952.513.368 (2)150
C5—H5⋯F1iii 0.952.382.900 (2)114
C10—H10⋯F1iii 0.952.312.863 (2)117
C15—H15⋯F2iv 0.952.292.856 (2)117
C20—H20⋯F2iv 0.952.342.860 (2)114
C15—H15⋯O3P v 0.952.643.466 (2)146
C19—H19⋯O2P vi 0.952.583.227 (3)125

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  Bis[trans-di-fluorido-tetra-kis-(pyridine-κN)chromium(III)] sodium tetra-chlorido-zincate perchlorate from synchrotron data.

Authors:  Dohyun Moon; Keon Sang Ryoo; Jong-Ha Choi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-25

2.  Crystal structure of trans-di-fluoridotetra-kis(pyridine-κN)chromium(III) tri-chlorido-(pyridine-κN)zincate monohydrate from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-04
  2 in total

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