Literature DB >> 24426313

Incidence and characterization of Potato virus V infections in Iran.

Fatemeh Shamsadden-Saeed1, Hossain Massumi1, Sakineh Moradi1, Mohammad Maddahian1, Jahangir Heydarnejad1, Akbar Hosseini Pour1, Arvind Varsani2.   

Abstract

A survey was carried out to determine the extent of Potato virus V (PVV) infection, together with other potyviruses, in Iran in both commercial and local potato varieties. We found a low incidence of PVV in commercial varieties compared to a local potato cultivar Zardi, in which we noted a PVV infection up to ~32.9 %. We determined the genomic sequence 9,812 nucleotides of one isolate (KER.LAL.P) from cultivar Agria and the 3'-terminal sequence including coat protein (CP) gene of four additional isolates from cultivar Zardi. The Iranian isolate PVV KER.LAL.P was found to share 91 % sequence identity with the Scottish isolate DV-42 (AJ243766) of PVV. The CP gene sequences of the PVV isolates from Iran shared 96.5 to 99.3 % pairwise nucleotide identity and they shared <97.5 % pairwise identity with the CP sequences of all other PVV isolates available in public databases. Our host studies indicated that the Iranian PVV isolate had a narrower host range and infected Nicotiana debneyi and N. glutinosa test plants. Within the commercial varieties of potato in Iran, we noted a significant amount of mixed potyvirus infection. This study is the first report of occurrence and complete genome of PVV in Iran.

Entities:  

Keywords:  Complete genome; Iran; Phylogenetic analysis; Potato virus V

Year:  2013        PMID: 24426313      PMCID: PMC3889240          DOI: 10.1007/s13337-013-0178-4

Source DB:  PubMed          Journal:  Virusdisease        ISSN: 2347-3584


  11 in total

1.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

2.  A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae).

Authors:  Brejnev Muhire; Darren P Martin; Judith K Brown; Jesús Navas-Castillo; Enrique Moriones; F Murilo Zerbini; Rafael Rivera-Bustamante; V G Malathi; Rob W Briddon; Arvind Varsani
Journal:  Arch Virol       Date:  2013-01-23       Impact factor: 2.574

3.  Identification of the genome-linked protein in virions of Potato virus A, with comparison to other members in genus Potyvirus.

Authors:  I Oruetxebarria; D Guo; A Merits; K Mäkinen; M Saarma; J P Valkonen
Journal:  Virus Res       Date:  2001-03       Impact factor: 3.303

4.  Molecular resolution of a complex of potyviruses infecting solanaceous crops at the centre of origin in Peru.

Authors:  C Spetz; A M Taboada; S Darwich; J Ramsell; L F Salazar; J P T Valkonen
Journal:  J Gen Virol       Date:  2003-09       Impact factor: 3.891

5.  The complete nucleotide sequence of pea seed-borne mosaic virus RNA.

Authors:  E Johansen; O F Rasmussen; M Heide; B Borkhardt
Journal:  J Gen Virol       Date:  1991-11       Impact factor: 3.891

6.  Molecular Characterization of Potato virus V Genomes from Europe Indicates Limited Spatiotemporal Strain Differentiation.

Authors:  I Oruetxebarria; T Kekarainen; C Spetz; J P Valkonen
Journal:  Phytopathology       Date:  2000-04       Impact factor: 4.025

7.  Sequence diversity in the surface-exposed amino-terminal region of the coat proteins of seven strains of sugarcane mosaic virus correlates with their host range.

Authors:  X W Xiao; M J Frenkel; D S Teakle; C W Ward; D D Shukla
Journal:  Arch Virol       Date:  1993       Impact factor: 2.574

8.  Analysis of the P1 gene sequences and the 3'-terminal sequences and secondary structures of the single-stranded RNA genome of Potato virus V.

Authors:  I Oruetxebarria; J P Valkonen
Journal:  Virus Genes       Date:  2001-06       Impact factor: 2.198

9.  RDP3: a flexible and fast computer program for analyzing recombination.

Authors:  Darren P Martin; Philippe Lemey; Martin Lott; Vincent Moulton; David Posada; Pierre Lefeuvre
Journal:  Bioinformatics       Date:  2010-08-26       Impact factor: 6.937

10.  Analysis of the biological and molecular variability of Watermelon mosaic virus isolates from Iran.

Authors:  Maraym Sharifi; Hossain Massumi; Jahangir Heydarnejad; Akbar Hosseini Pour; Mehdi Shaabanian; H Rahimian
Journal:  Virus Genes       Date:  2008-08-20       Impact factor: 2.198

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