Literature DB >> 24426179

Draft Genome Sequence of the Methyl Parathion (Pesticide) Degrading Bacterium Pseudomonas spp. MR3.

Manoj V Parakhia1, Rukam S Tomar1, Megha R Vadukia1, Bipin J Malviya1, Visha M Rathod1, Jalpa R Thakkar1, Kinjal J Parmar1, Rashmin M Dhingani2, B A Golakiya1.   

Abstract

Pseudomonas spp. MR3 was isolated from the surrounding soil of pesticide manufacturing industries of Ankleshwar, Gujarat. Under laboratory conditions these microbes were able to degrade up to 500 ppm of methyl parathion within 72 h. Genome sequencing of Pseudomonas spp. MR3 was carried out inIon Torrent (PGM), next generation sequencer. The data obtained revealed 1,268 contigs with genome size of 2.99 Mb and G + C content of 60.9 %. The draft genome sequence of strain MR3 will be helpful in studying the genetic pathways involved in the degradation of several pesticides.

Entities:  

Keywords:  Draft genome; Methyl parathion; Pseudomonas; Strain MR3

Year:  2013        PMID： 24426179      PMCID： PMC3889846          DOI： 10.1007/s12088-013-0433-9

Source DB:  PubMed          Journal:  Indian J Microbiol        ISSN： 0046-8991            Impact factor:   2.461


  3 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

3.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  3 in total
  2 in total

1.  An Approach to In Silico Dissection of Bacterial Intelligence Through Selective Genomic Tools.

Authors:  Reshma Talkal; Hitesh Tikariha; Hemant Purohit
Journal:  Indian J Microbiol       Date:  2018-04-12       Impact factor: 2.461

Review 2.  Current status of pesticide effects on environment, human health and it's eco-friendly management as bioremediation: A comprehensive review.

Authors:  Vinay Mohan Pathak; Vijay K Verma; Balwant Singh Rawat; Baljinder Kaur; Neelesh Babu; Akansha Sharma; Seeta Dewali; Monika Yadav; Reshma Kumari; Sevaram Singh; Asutosh Mohapatra; Varsha Pandey; Nitika Rana; Jose Maria Cunill
Journal:  Front Microbiol       Date:  2022-08-17       Impact factor: 6.064
  2 in total

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