Literature DB >> 24425855

Development of allele-specific gene-silencing siRNAs for TGFBI Arg124Cys in lattice corneal dystrophy type I.

David G Courtney1, Sarah D Atkinson, Johnny E Moore, Eleonora Maurizi, Chiara Serafini, Graziella Pellegrini, Graeme C Black, Forbes D Manson, Gary H F Yam, Caroline J Macewen, Edwin H A Allen, W H Irwin McLean, C B Tara Moore.   

Abstract

PURPOSE: This study aimed to investigate the potency and specificity of short-interfering RNA (siRNA) treatment for TGFBI-Arg124Cys lattice corneal dystrophy type I (LCDI) using exogenous expression constructs in model systems and endogenous gene targeting in an ex vivo model using corneal epithelial cell cultures.
METHODS: A panel of 19 TGFBI-Arg124Cys-specific siRNAs were assessed by a dual-luciferase reporter assay. Further assessment using pyrosequencing and qPCR was used to identify the lead siRNA; suppression of mutant TGFBIp expression was confirmed by Western blot and Congo red aggregation assays. An ex vivo model of LCDI was established using limbal biopsies from corneal dystrophy patients harboring the Arg124Cys mutation. Treatment efficiency of the siRNA was assessed for the inhibition of the mutant allele in the primary patient's corneal epithelial cells using pyrosequencing, quantitative PCR (qPCR), and an ELISA.
RESULTS: A lead siRNA was identified, and demonstrated to be potent and specific in inhibiting the TGFBI-Arg124Cys mutant allele at the mRNA and protein levels. Besides high allele specificity, siRNA treatment achieved a 44% reduction of the endogenous Arg124Cys allele in an ex vivo model of LCDI.
CONCLUSIONS: We have identified a lead siRNA specific to the TGFBI-Arg124Cys mutant allele associated with LCDI. Silencing of exogenous TGFBI was observed at mRNA and protein levels, and in an ex vivo model of LCDI with an efficient suppression of the endogenous mutant allele. This result indicates the potential of siRNA treatment as a personalized medicine approach for the management of heritable TGFBI-associated corneal dystrophies.

Entities:  

Keywords:  RNA interference; TGFBI; allele discrimination; lattice corneal dystrophy; siRNA

Mesh:

Substances:

Year:  2014        PMID: 24425855     DOI: 10.1167/iovs.13-13279

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  11 in total

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Authors:  Ebbe Toftgaard Poulsen; Kasper Runager; Nadia Sukusu Nielsen; Marie V Lukassen; Karen Thomsen; Paige Snider; Olga Simmons; Henrik Vorum; Simon J Conway; Jan J Enghild
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Review 3.  Gene Therapy in the Anterior Eye Segment.

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4.  Towards personalised allele-specific CRISPR gene editing to treat autosomal dominant disorders.

Authors:  Kathleen A Christie; David G Courtney; Larry A DeDionisio; Connie Chao Shern; Shyamasree De Majumdar; Laura C Mairs; M Andrew Nesbit; C B Tara Moore
Journal:  Sci Rep       Date:  2017-11-23       Impact factor: 4.379

5.  ASPsiRNA: A Resource of ASP-siRNAs Having Therapeutic Potential for Human Genetic Disorders and Algorithm for Prediction of Their Inhibitory Efficacy.

Authors:  Isha Monga; Abid Qureshi; Nishant Thakur; Amit Kumar Gupta; Manoj Kumar
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6.  Generation of TGFBI knockout ABCG2+/ABCB5+ double-positive limbal epithelial stem cells by CRISPR/Cas9-mediated genome editing.

Authors:  Eung Kweon Kim; Seunghyuk Kim; Yong-Sun Maeng
Journal:  PLoS One       Date:  2019-02-12       Impact factor: 3.240

7.  Identification of a Heterozygous Mutation in the TGFBI Gene in a Hui-Chinese Family with Corneal Dystrophy.

Authors:  Qin Xiang; Lamei Yuan; Yanna Cao; Hongbo Xu; Yunfeiyang Li; Hao Deng
Journal:  J Ophthalmol       Date:  2019-02-19       Impact factor: 1.909

8.  Allele-specific silencing of mutant p53 attenuates dominant-negative and gain-of-function activities.

Authors:  Swathi V Iyer; Alejandro Parrales; Priya Begani; Akshay Narkar; Amit S Adhikari; Luis A Martinez; Tomoo Iwakuma
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9.  Allele-specific silencing of EEC p63 mutant R304W restores p63 transcriptional activity.

Authors:  F Novelli; A M Lena; E Panatta; W Nasser; R Shalom-Feuerstein; E Candi; G Melino
Journal:  Cell Death Dis       Date:  2016-05-19       Impact factor: 8.469

10.  CRISPR/Cas9 DNA cleavage at SNP-derived PAM enables both in vitro and in vivo KRT12 mutation-specific targeting.

Authors:  D G Courtney; J E Moore; S D Atkinson; E Maurizi; E H A Allen; D M L Pedrioli; W H I McLean; M A Nesbit; C B T Moore
Journal:  Gene Ther       Date:  2015-08-20       Impact factor: 5.250

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