| Literature DB >> 24423916 |
S Zanutto1, S Pizzamiglio2, M Ghilotti1, C Bertan3, F Ravagnani4, F Perrone3, E Leo5, S Pilotti3, P Verderio2, M Gariboldi1, M A Pierotti6.
Abstract
BACKGROUND: Plasma circulating tumour-specific microRNAs (miRNAs) are promising biomarkers of tumour presence and recurrence, especially for diseases whose best chance of successful treatment requires early diagnosis and timely surgery of an already malignant but not yet invasive tumour, such as colorectal cancer (CRC).Entities:
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Year: 2014 PMID: 24423916 PMCID: PMC3929896 DOI: 10.1038/bjc.2013.819
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
List of the miRNAs analysed in the plasma samples; miR-16, in italics, was used as a normaliser
| Hsa-miR-17-3p | 002421 | |
| Hsa-miR-18a | 002422 | |
| Hsa-miR-18b | 002217 | |
| Hsa-miR-21 | 000397 | |
| Hsa-miR-29a | Hs_miR-29_1 | |
| Hsa-miR-31 | 002279 | |
| Hsa-miR-92 | Hs_miR-92_1 | |
| Hsa-miR-93 | 000432 | |
| Hsa-miR-96 | 000186 | |
| Hsa-miR-133a | 002246 | |
| Hsa-miR-135b | 002261 | |
| Hsa-miR-137 | 001129 | |
| Hsa-miR-139-5p | 002289 | |
| Hsa-miR-182 | 002334 | |
| Hsa-miR-183 | 002269 | |
| Hsa-miR-203 | 000507 | |
| Hsa-miR-204 | 000508 | |
| Hsa-miR-221 | 000524 | |
| Hsa-miR-224 | 002099 | |
| Hsa-miR-301b | 002392 | |
| Hsa-miR-378 | 002243 | |
| Hsa-miR-424 | 000604 | |
| Hsa-miR-512-3p | 001823 | |
| Hsa-miR-517c | 001153 | |
| Hsa-miR-885-5p | 002296 | |
Expressed at detectable levels (mean Ct values <34).
Analysed with the Qiagen Technology.
Probe derived from the TaqMan Array MicroRNA Cards v.2 designed on Mus Musculus sequences.
Figure 1Results of the logistic analysis in the training set. Odds ratio (OR) and its 95% confidence interval (CI) obtained from the univariate logistic model implemented for each of the 16 miRNAs evaluated in the training set.
Figure 2Distribution of the relative quantity of the four relevant miRNAs in the training set. Box-plots reflect the distribution in cases and controls of the relative quantity of the miRNAs with odds ratio statistically significant in the training set. Each box indicates the 25th and 75th percentiles of the distribution. The horizontal line inside the box indicates the median, and the whiskers indicate the extreme measured values. Each individual value is represented by a dot.
Results of the univariate logistic model and AUC of each miRNA in the validation set
| | | | | ||||
|---|---|---|---|---|---|---|---|
| miR-135b | 1.015 | 0.726 | 1.422 | 0.928 | 0.477 | 0.317 | 0.638 |
| miR-204 | 0.943 | 0.559 | 1.589 | 0.824 | 0.492 | 0.339 | 0.645 |
| miR-21 | 2.083 | 1.013 | 4.286 | 0.046 | 0.647 | 0.505 | 0.790 |
| miR-378 | 4.343 | 1.816 | 10.389 | 0.001 | 0.796 | 0.680 | 0.911 |
Abbreviations: AUC=area under the ROC curve; miRNA=microRNA; OR=odds ratio; ROC=receiver operating characteristic.
Figure 3Distribution of the relative quantity of the two validated miRNAs and the corresponding receiver operating characteristic (ROC) curves. (A and C) The box-plots reflect the distribution in cases and controls of the relative quantity of miR-378 (A) and miR-21 (C) in the validation set. Each box indicates the 25th and 75th percentiles of the distribution. The horizontal line inside the box indicates the median, and the whiskers indicate the extreme measured values. (B and D) The ROC curves derived from the univariate logistic analysis in the validation set for miR-378 (B) and miR-21 (D), respectively.
Figure 4Distribution of the relative quantity of miR-378 in plasma collected before and after surgery. Box-plot reflects the distribution of the relative quantity of miR-378 in plasma collected the day before surgery (T0) and 4–6 months after it (T1) in disease-free patients. Each box indicates the 25th and 75th percentiles of the distribution. The horizontal line inside the box indicates the median, and the whiskers indicate the extreme measured values. Each individual value is represented by a dot and the two points corresponding to the same individual are connected by a line.