Literature DB >> 24419630

Crystallization and preliminary X-ray crystallographic analysis of L-arabinose isomerase from thermophilic Geobacillus kaustophilus.

Thinh-Phat Cao1, Jin Myung Choi1, Sang-Jae Lee2, Yong-Jik Lee2, Sung-Keun Lee3, Youngsoo Jun4, Dong-Woo Lee2, Sung Haeng Lee1.   

Abstract

L-arabinose isomerase (AI), which catalyzes the isomerization of L-arabinose to L-ribulose, can also convert D-galactose to D-tagatose, a natural sugar replacer, which is of commercial interest in the food and healthcare industries. Intriguingly, mesophilic and thermophilic AIs showed different substrate preferences and metal requirements in catalysis and different thermostabilities. However, the catalytic mechanism of thermophilic AIs still remains unclear. Therefore, thermophilic Geobacillus kaustophilus AI (GKAI) was overexpressed, purified and crystallized, and a preliminary X-ray diffraction data set was obtained. Diffraction data were collected from a GKAI crystal to 2.70 Å resolution. The crystal belonged to the monoclinic space group C2, with unit-cell parameters a = 224.12, b = 152.95, c = 91.28 Å, β = 103.61°. The asymmetric unit contained six molecules, with a calculated Matthews coefficient of 2.25 Å(3) Da(-1) and a solvent content of 45.39%. The three-dimensional structure determination of GKAI is currently in progress by molecular replacement and model building.

Entities:  

Keywords:  Geobacillus kaustophilus; l-arabinose isomerase

Mesh:

Substances:

Year:  2013        PMID: 24419630      PMCID: PMC3943100          DOI: 10.1107/S2053230X13033724

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  26 in total

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Authors:  F J SIMPSON; W A WOOD
Journal:  J Biol Chem       Date:  1958-01       Impact factor: 5.157

Review 2.  AraC protein, regulation of the l-arabinose operon in Escherichia coli, and the light switch mechanism of AraC action.

Authors:  Robert Schleif
Journal:  FEMS Microbiol Rev       Date:  2010-04-08       Impact factor: 16.408

3.  L-arabinose isomerase formation in a conditional mutant of gene araA of Escherichia coli B-r.

Authors:  J Pauley; J Power; J Irr
Journal:  J Bacteriol       Date:  1972-12       Impact factor: 3.490

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Creation of metal-independent hyperthermophilic L-arabinose isomerase by homologous recombination.

Authors:  Young-Ho Hong; Dong-Woo Lee; Yu-Ryang Pyun; Sung Haeng Lee
Journal:  J Agric Food Chem       Date:  2011-12-06       Impact factor: 5.279

6.  Characterization of a thermoacidophilic L-arabinose isomerase from Alicyclobacillus acidocaldarius: role of Lys-269 in pH optimum.

Authors:  Sang-Jae Lee; Dong-Woo Lee; Eun-Ah Choe; Young-Ho Hong; Seong-Bo Kim; Byoung-Chan Kim; Yu-Ryang Pyun
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

7.  Bioconversion of D-galactose into D-tagatose by expression of L-arabinose isomerase.

Authors:  H J Roh; P Kim; Y C Park; J H Choi
Journal:  Biotechnol Appl Biochem       Date:  2000-02       Impact factor: 2.431

8.  Distinct metal dependence for catalytic and structural functions in the L-arabinose isomerases from the mesophilic Bacillus halodurans and the thermophilic Geobacillus stearothermophilus.

Authors:  Dong-Woo Lee; Eun-Ah Choe; Seong-Bo Kim; Soo-Hyun Eom; Young-Ho Hong; Sang-Jae Lee; Han-Seung Lee; Dong-Yun Lee; Yu-Ryang Pyun
Journal:  Arch Biochem Biophys       Date:  2005-02-15       Impact factor: 4.013

9.  Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.

Authors:  Hideto Takami; Yoshihiro Takaki; Gab-Joo Chee; Shinro Nishi; Shigeru Shimamura; Hiroko Suzuki; Satomi Matsui; Ikuo Uchiyama
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

10.  Cloning, expression and characterization of L-arabinose isomerase from Thermotoga neapolitana: bioconversion of D-galactose to D-tagatose using the enzyme.

Authors:  Byoung-Chan Kim; Yoon-Hee Lee; Han-Seung Lee; Dong-Woo Lee; Eun-Ah Choe; Yu-Ryang Pyun
Journal:  FEMS Microbiol Lett       Date:  2002-06-18       Impact factor: 2.742

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