Literature DB >> 24414447

Determination of the catalytic activity of binuclear metallohydrolases using isothermal titration calorimetry.

Marcelo M Pedroso1, Fernanda Ely, Thierry Lonhienne, Lawrence R Gahan, David L Ollis, Luke W Guddat, Gerhard Schenk.   

Abstract

Binuclear metallohydrolases are a large and diverse family of enzymes that are involved in numerous metabolic functions. An increasing number of members find applications as drug targets or in processes such as bioremediation. It is thus essential to have an assay available that allows the rapid and reliable determination of relevant catalytic parameters (k cat, K m, and k cat/K m). Continuous spectroscopic assays are frequently only possible by using synthetic (i.e., nonbiological) substrates that possess a suitable chromophoric marker (e.g., nitrophenol). Isothermal titration calorimetry, in contrast, affords a rapid assay independent of the chromophoric properties of the substrate-the heat associated with the hydrolytic reaction can be directly related to catalytic properties. Here, we demonstrate the efficiency of the method on several selected examples of this family of enzymes and show that, in general, the catalytic parameters obtained by isothermal titration calorimetry are in good agreement with those obtained from spectroscopic assays.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24414447     DOI: 10.1007/s00775-013-1079-0

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  33 in total

1.  An adenylyl cyclase pseudogene in Mycobacterium tuberculosis has a functional ortholog in Mycobacterium avium.

Authors:  A R Shenoy; A Srinivas; M Mahalingam; S S Visweswariah
Journal:  Biochimie       Date:  2005-06       Impact factor: 4.079

Review 2.  The catalytic mechanisms of binuclear metallohydrolases.

Authors:  Natasa Mitić; Sarah J Smith; Ademir Neves; Luke W Guddat; Lawrence R Gahan; Gerhard Schenk
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Degradation of nerve agents by an organophosphate-degrading agent (OpdA).

Authors:  R M Dawson; S Pantelidis; H R Rose; S E Kotsonis
Journal:  J Hazard Mater       Date:  2008-01-04       Impact factor: 10.588

4.  Anomalous scattering analysis of Agrobacterium radiobacter phosphotriesterase: the prominent role of iron in the heterobinuclear active site.

Authors:  Colin J Jackson; Paul D Carr; Hye-Kyung Kim; Jian-Wei Liu; Paul Herrald; Natasa Mitić; Gerhard Schenk; Clyde A Smith; David L Ollis
Journal:  Biochem J       Date:  2006-08-01       Impact factor: 3.857

5.  Electronic and geometric structures of the organophosphate-degrading enzyme from Agrobacterium radiobacter (OpdA).

Authors:  Fernanda Ely; Kieran S Hadler; Nataša Mitić; Lawrence R Gahan; David L Ollis; Nicholas M Plugis; Marie T Russo; James A Larrabee; Gerhard Schenk
Journal:  J Biol Inorg Chem       Date:  2011-04-13       Impact factor: 3.358

6.  Letter: A phosphodiesterase from Enterobacter aerogenes.

Authors:  J A Gerlt; F H Westheimer
Journal:  J Am Chem Soc       Date:  1973-11-28       Impact factor: 15.419

Review 7.  Binuclear metallohydrolases: complex mechanistic strategies for a simple chemical reaction.

Authors:  Gerhard Schenk; Nataša Mitić; Lawrence R Gahan; David L Ollis; Ross P McGeary; Luke W Guddat
Journal:  Acc Chem Res       Date:  2012-06-14       Impact factor: 22.384

8.  Structural flexibility enhances the reactivity of the bioremediator glycerophosphodiesterase by fine-tuning its mechanism of hydrolysis.

Authors:  Kieran S Hadler; Natasa Mitić; Fernanda Ely; Graeme R Hanson; Lawrence R Gahan; James A Larrabee; David L Ollis; Gerhard Schenk
Journal:  J Am Chem Soc       Date:  2009-08-26       Impact factor: 15.419

9.  Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.

Authors:  Kieran S Hadler; Eric A Tanifum; Sylvia Hsu-Chen Yip; Natasa Mitić; Luke W Guddat; Colin J Jackson; Lawrence R Gahan; Kelly Nguyen; Paul D Carr; David L Ollis; Alvan C Hengge; James A Larrabee; Gerhard Schenk
Journal:  J Am Chem Soc       Date:  2008-10-03       Impact factor: 15.419

10.  Metal-ion mutagenesis: conversion of a purple acid phosphatase from sweet potato to a neutral phosphatase with the formation of an unprecedented catalytically competent Mn(II)Mn(II) active site.

Authors:  Natasa Mitić; Christopher J Noble; Lawrence R Gahan; Graeme R Hanson; Gerhard Schenk
Journal:  J Am Chem Soc       Date:  2009-06-17       Impact factor: 15.419

View more
  3 in total

1.  Fluoride inhibition of Sporosarcina pasteurii urease: structure and thermodynamics.

Authors:  Stefano Benini; Michele Cianci; Luca Mazzei; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2014-08-12       Impact factor: 3.358

2.  Structure and mechanism of potent bifunctional β-lactam- and homoserine lactone-degrading enzymes from marine microorganisms.

Authors:  Christopher Selleck; Marcelo Monteiro Pedroso; Liam Wilson; Stefan Krco; Esmée Gianna Knaven; Manfredi Miraula; Nataša Mitić; James A Larrabee; Thomas Brück; Alice Clark; Luke W Guddat; Gerhard Schenk
Journal:  Sci Rep       Date:  2020-07-30       Impact factor: 4.379

Review 3.  Enzyme Kinetics by Isothermal Titration Calorimetry: Allostery, Inhibition, and Dynamics.

Authors:  Yun Wang; Guanyu Wang; Nicolas Moitessier; Anthony K Mittermaier
Journal:  Front Mol Biosci       Date:  2020-10-19
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.