Literature DB >> 24403299

Rapid resistome fingerprinting and clonal lineage profiling of carbapenem-resistant Klebsiella pneumoniae isolates by targeted next-generation sequencing.

Fabio Arena1, P Alexander Rolfe, Graeme Doran, Viola Conte, Sarah Gruszka, Thomas Clarke, Yemi Adesokan, Tommaso Giani, Gian Maria Rossolini.   

Abstract

Thirty-two carbapenem-resistant Klebsiella pneumoniae isolates, representative of different resistance mechanisms and clonal lineages, were analyzed with the Pathogenica HAI BioDetection system, based on targeted next-generation sequencing (NGS) technology. With most strains, the system simultaneously yielded comprehensive information on relevant β-lactam resistance determinants and accurate discrimination of clonal lineages, in a shorter time frame and in a less labor-intensive manner than currently available methods for molecular epidemiology analysis. Results supported the usefulness of targeted NGS-based technologies for similar applications.

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Year:  2014        PMID： 24403299      PMCID： PMC3957740          DOI： 10.1128/JCM.03247-13

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  28 in total

1.  What remains against carbapenem-resistant Enterobacteriaceae? Evaluation of chloramphenicol, ciprofloxacin, colistin, fosfomycin, minocycline, nitrofurantoin, temocillin and tigecycline.

Authors:  David M Livermore; Marina Warner; Shazad Mushtaq; Michel Doumith; Jiancheng Zhang; Neil Woodford
Journal:  Int J Antimicrob Agents       Date:  2011-03-22       Impact factor: 5.283

2.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

3.  Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates.

Authors:  Sophie Vimont; Basma Mnif; Cindy Fevre; Sylvain Brisse
Journal:  J Med Microbiol       Date:  2008-10       Impact factor: 2.472

Review 4.  Carbapenem-resistant Enterobacteriaceae: epidemiology and prevention.

Authors:  Neil Gupta; Brandi M Limbago; Jean B Patel; Alexander J Kallen
Journal:  Clin Infect Dis       Date:  2011-07-01       Impact factor: 9.079

5.  High-level carbapenem resistance in a Klebsiella pneumoniae clinical isolate is due to the combination of bla(ACT-1) beta-lactamase production, porin OmpK35/36 insertional inactivation, and down-regulation of the phosphate transport porin phoe.

Authors:  Frank M Kaczmarek; Fadia Dib-Hajj; Wenchi Shang; Thomas D Gootz
Journal:  Antimicrob Agents Chemother       Date:  2006-10       Impact factor: 5.191

Review 6.  Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance.

Authors:  Neil Woodford; Jane F Turton; David M Livermore
Journal:  FEMS Microbiol Rev       Date:  2011-03-01       Impact factor: 16.408

7.  Outcomes of carbapenem-resistant Klebsiella pneumoniae infection and the impact of antimicrobial and adjunctive therapies.

Authors:  Gopi Patel; Shirish Huprikar; Stephanie H Factor; Stephen G Jenkins; David P Calfee
Journal:  Infect Control Hosp Epidemiol       Date:  2008-12       Impact factor: 3.254

8.  Predictors of carbapenem-resistant Klebsiella pneumoniae acquisition among hospitalized adults and effect of acquisition on mortality.

Authors:  Mitchell J Schwaber; Shiri Klarfeld-Lidji; Shiri Navon-Venezia; David Schwartz; Azita Leavitt; Yehuda Carmeli
Journal:  Antimicrob Agents Chemother       Date:  2007-12-17       Impact factor: 5.191

9.  Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology.

Authors:  Alexander Mellmann; Dag Harmsen; Craig A Cummings; Emily B Zentz; Shana R Leopold; Alain Rico; Karola Prior; Rafael Szczepanowski; Yongmei Ji; Wenlan Zhang; Stephen F McLaughlin; John K Henkhaus; Benjamin Leopold; Martina Bielaszewska; Rita Prager; Pius M Brzoska; Richard L Moore; Simone Guenther; Jonathan M Rothberg; Helge Karch
Journal:  PLoS One       Date:  2011-07-20       Impact factor: 3.240

Review 10.  Global spread of Carbapenemase-producing Enterobacteriaceae.

Authors:  Patrice Nordmann; Thierry Naas; Laurent Poirel
Journal:  Emerg Infect Dis       Date:  2011-10       Impact factor: 6.883
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  5 in total

1.  Whole-genome sequencing of Klebsiella pneumoniae MDR strain isolated in a Syrian refugee.

Authors:  Silvia Angeletti; Eleonora Cella; Alessia Lai; Alessandra Lo Presti; Francesca Antonelli; Alessia Conti; Maurizio Lopalco; Silvia Spoto; Gianguglielmo Zehender; Massimo Ciccozzi
Journal:  Pathog Glob Health       Date:  2017-04-12       Impact factor: 2.894

2.  Direct detection and prediction of all pneumococcal serogroups by target enrichment-based next-generation sequencing.

Authors:  Margaret Ip; Veranja Liyanapathirana; Irene Ang; Kitty S C Fung; T K Ng; Haokui Zhou; Dominic N C Tsang
Journal:  J Clin Microbiol       Date:  2014-10-01       Impact factor: 5.948

3.  Next-generation sequencing for typing and detection of resistance genes: performance of a new commercial method during an outbreak of extended-spectrum-beta-lactamase-producing Escherichia coli.

Authors:  J Veenemans; I T Overdevest; E Snelders; I Willemsen; Y Hendriks; A Adesokan; G Doran; S Bruso; A Rolfe; A Pettersson; J A J W Kluytmans
Journal:  J Clin Microbiol       Date:  2014-04-30       Impact factor: 5.948

Review 4.  The diagnosis of infectious diseases by whole genome next generation sequencing: a new era is opening.

Authors:  Marc Lecuit; Marc Eloit
Journal:  Front Cell Infect Microbiol       Date:  2014-03-06       Impact factor: 5.293

5.  Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis.

Authors:  Nilay Peker; John W A Rossen; Ruud H Deurenberg; Paula C Langereis; Erwin G C Raangs; Jan A Kluytmans; Alexander W Friedrich; Jacobien Veenemans; Bhanu Sinha
Journal:  Microorganisms       Date:  2018-01-11
  5 in total

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