Literature DB >> 24401864

Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea.

Michaela Stieglmeier1, Maria Mooshammer2, Barbara Kitzler3, Wolfgang Wanek2, Sophie Zechmeister-Boltenstern4, Andreas Richter2, Christa Schleper1.   

Abstract

Soil emissions are largely responsible for the increase of the potent greenhouse gas nitrous oxide (N2O) in the atmosphere and are generally attributed to the activity of nitrifying and denitrifying bacteria. However, the contribution of the recently discovered ammonia-oxidizing archaea (AOA) to N2O production from soil is unclear as is the mechanism by which they produce it. Here we investigate the potential of Nitrososphaera viennensis, the first pure culture of AOA from soil, to produce N2O and compare its activity with that of a marine AOA and an ammonia-oxidizing bacterium (AOB) from soil. N. viennensis produced N2O at a maximum yield of 0.09% N2O per molecule of nitrite under oxic growth conditions. N2O production rates of 4.6±0.6 amol N2O cell(-1) h(-1) and nitrification rates of 2.6±0.5 fmol NO2(-) cell(-1) h(-1) were in the same range as those of the AOB Nitrosospira multiformis and the marine AOA Nitrosopumilus maritimus grown under comparable conditions. In contrast to AOB, however, N2O production of the two archaeal strains did not increase when the oxygen concentration was reduced, suggesting that they are not capable of denitrification. In (15)N-labeling experiments we provide evidence that both ammonium and nitrite contribute equally via hybrid N2O formation to the N2O produced by N. viennensis under all conditions tested. Our results suggest that archaea may contribute to N2O production in terrestrial ecosystems, however, they are not capable of nitrifier-denitrification and thus do not produce increasing amounts of the greenhouse gas when oxygen becomes limiting.

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Year:  2014        PMID: 24401864      PMCID: PMC3996696          DOI: 10.1038/ismej.2013.220

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  51 in total

1.  Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition.

Authors:  R I Griffiths; A S Whiteley; A G O'Donnell; M J Bailey
Journal:  Appl Environ Microbiol       Date:  2000-12       Impact factor: 4.792

2.  Archaea predominate among ammonia-oxidizing prokaryotes in soils.

Authors:  S Leininger; T Urich; M Schloter; L Schwark; J Qi; G W Nicol; J I Prosser; S C Schuster; C Schleper
Journal:  Nature       Date:  2006-08-17       Impact factor: 49.962

3.  Isotopic signature of N(2)O produced by marine ammonia-oxidizing archaea.

Authors:  Alyson E Santoro; Carolyn Buchwald; Matthew R McIlvin; Karen L Casciotti
Journal:  Science       Date:  2011-07-28       Impact factor: 47.728

4.  Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway.

Authors:  Liz J Shaw; Graeme W Nicol; Zena Smith; Jon Fear; James I Prosser; Elizabeth M Baggs
Journal:  Environ Microbiol       Date:  2006-02       Impact factor: 5.491

Review 5.  Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO).

Authors:  R Conrad
Journal:  Microbiol Rev       Date:  1996-12

6.  A suite of sensitive chemical methods to determine the δ15N of ammonium, nitrate and total dissolved N in soil extracts.

Authors:  Petra Lachouani; Alexander H Frank; Wolfgang Wanek
Journal:  Rapid Commun Mass Spectrom       Date:  2010-12-30       Impact factor: 2.419

7.  Nitrous oxide (N2O): the dominant ozone-depleting substance emitted in the 21st century.

Authors:  A R Ravishankara; John S Daniel; Robert W Portmann
Journal:  Science       Date:  2009-08-27       Impact factor: 47.728

Review 8.  Metabolism of inorganic N compounds by ammonia-oxidizing bacteria.

Authors:  Daniel J Arp; Lisa Y Stein
Journal:  Crit Rev Biochem Mol Biol       Date:  2003       Impact factor: 8.250

9.  Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms.

Authors:  Daniel T Verhamme; James I Prosser; Graeme W Nicol
Journal:  ISME J       Date:  2011-01-13       Impact factor: 10.302

10.  Nitric oxide and nitrous oxide turnover in natural and engineered microbial communities: biological pathways, chemical reactions, and novel technologies.

Authors:  Frank Schreiber; Pascal Wunderlin; Kai M Udert; George F Wells
Journal:  Front Microbiol       Date:  2012-10-23       Impact factor: 5.640

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  39 in total

1.  Genomic and proteomic characterization of "Candidatus Nitrosopelagicus brevis": an ammonia-oxidizing archaeon from the open ocean.

Authors:  Alyson E Santoro; Christopher L Dupont; R Alex Richter; Matthew T Craig; Paul Carini; Matthew R McIlvin; Youngik Yang; William D Orsi; Dawn M Moran; Mak A Saito
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-13       Impact factor: 11.205

2.  Nutrient transport suggests an evolutionary basis for charged archaeal surface layer proteins.

Authors:  Po-Nan Li; Jonathan Herrmann; Bradley B Tolar; Frédéric Poitevin; Rasika Ramdasi; John R Bargar; David A Stahl; Grant J Jensen; Christopher A Francis; Soichi Wakatsuki; Henry van den Bedem
Journal:  ISME J       Date:  2018-06-13       Impact factor: 10.302

Review 3.  The history of aerobic ammonia oxidizers: from the first discoveries to today.

Authors:  Maria Monteiro; Joana Séneca; Catarina Magalhães
Journal:  J Microbiol       Date:  2014-06-28       Impact factor: 3.422

4.  Biological soil crusts accelerate the nitrogen cycle through large NO and HONO emissions in drylands.

Authors:  Bettina Weber; Dianming Wu; Alexandra Tamm; Nina Ruckteschler; Emilio Rodríguez-Caballero; Jörg Steinkamp; Hannah Meusel; Wolfgang Elbert; Thomas Behrendt; Matthias Sörgel; Yafang Cheng; Paul J Crutzen; Hang Su; Ulrich Pöschl
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

5.  Microbial mechanisms and ecosystem flux estimation for aerobic NOy emissions from deciduous forest soils.

Authors:  Ryan M Mushinski; Richard P Phillips; Zachary C Payne; Rebecca B Abney; Insu Jo; Songlin Fei; Sally E Pusede; Jeffrey R White; Douglas B Rusch; Jonathan D Raff
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-18       Impact factor: 11.205

6.  Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers.

Authors:  Melina Kerou; Pierre Offre; Luis Valledor; Sophie S Abby; Michael Melcher; Matthias Nagler; Wolfram Weckwerth; Christa Schleper
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-18       Impact factor: 11.205

7.  Comparative Metagenomics Reveals Enhanced Nutrient Cycling Potential after 2 Years of Biochar Amendment in a Tropical Oxisol.

Authors:  Julian Yu; Lauren M Deem; Susan E Crow; Jonathan Deenik; C Ryan Penton
Journal:  Appl Environ Microbiol       Date:  2019-05-16       Impact factor: 4.792

8.  Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota.

Authors:  Jessica A Kozlowski; Michaela Stieglmeier; Christa Schleper; Martin G Klotz; Lisa Y Stein
Journal:  ISME J       Date:  2016-02-16       Impact factor: 10.302

9.  Year-Round Shotgun Metagenomes Reveal Stable Microbial Communities in Agricultural Soils and Novel Ammonia Oxidizers Responding to Fertilization.

Authors:  Luis H Orellana; Joanne C Chee-Sanford; Robert A Sanford; Frank E Löffler; Konstantinos T Konstantinidis
Journal:  Appl Environ Microbiol       Date:  2018-01-02       Impact factor: 4.792

Review 10.  Diversity, ecology and evolution of Archaea.

Authors:  Brett J Baker; Valerie De Anda; Kiley W Seitz; Nina Dombrowski; Alyson E Santoro; Karen G Lloyd
Journal:  Nat Microbiol       Date:  2020-05-04       Impact factor: 17.745

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