| Literature DB >> 24392290 |
Grant Harris1, Sean Farley2, Gareth J Russell3, Matthew J Butler1, Jeff Selinger4.
Abstract
Wildlife biologists often use grid-based designs to sample animals and generate abundance estimates. Although sampling in grids is theoretically sound, in application, the method can be logistically difficult and expensive when sampling elusive species inhabiting extensive areas. These factors make it challenging to sample animals and meet the statistical assumption of all individuals having an equal probability of capture. Violating this assumption biases results. Does an alternative exist? Perhaps by sampling only where resources attract animals (i.e., targeted sampling), it would provide accurate abundance estimates more efficiently and affordably. However, biases from this approach would also arise if individuals have an unequal probability of capture, especially if some failed to visit the sampling area. Since most biological programs are resource limited, and acquiring abundance data drives many conservation and management applications, it becomes imperative to identify economical and informative sampling designs. Therefore, we evaluated abundance estimates generated from grid and targeted sampling designs using simulations based on geographic positioning system (GPS) data from 42 Alaskan brown bears (Ursus arctos). Migratory salmon drew brown bears from the wider landscape, concentrating them at anadromous streams. This provided a scenario for testing the targeted approach. Grid and targeted sampling varied by trap amount, location (traps placed randomly, systematically or by expert opinion), and traps stationary or moved between capture sessions. We began by identifying when to sample, and if bears had equal probability of capture. We compared abundance estimates against seven criteria: bias, precision, accuracy, effort, plus encounter rates, and probabilities of capture and recapture. One grid (49 km(2) cells) and one targeted configuration provided the most accurate results. Both placed traps by expert opinion and moved traps between capture sessions, which raised capture probabilities. The grid design was least biased (-10.5%), but imprecise (CV 21.2%), and used most effort (16,100 trap-nights). The targeted configuration was more biased (-17.3%), but most precise (CV 12.3%), with least effort (7,000 trap-nights). Targeted sampling generated encounter rates four times higher, and capture and recapture probabilities 11% and 60% higher than grid sampling, in a sampling frame 88% smaller. Bears had unequal probability of capture with both sampling designs, partly because some bears never had traps available to sample them. Hence, grid and targeted sampling generated abundance indices, not estimates. Overall, targeted sampling provided the most accurate and affordable design to index abundance. Targeted sampling may offer an alternative method to index the abundance of other species inhabiting expansive and inaccessible landscapes elsewhere, provided their attraction to resource concentrations.Entities:
Keywords: Abundance; Brown bear; Capture heterogeneity; Capture rate; Grid sampling; Grizzly bear; MARK; Population; Sampling; Ursus arctos
Year: 2013 PMID: 24392290 PMCID: PMC3869179 DOI: 10.7717/peerj.227
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Study Location.
We simulated and compared capture-mark-recapture using grid-based and targeted sampling designs for brown bears (Ursus acrtos) inhabiting the Kenai Peninsula (center, with elevation shaded from low [light gray] to high [black]), south-central Alaska, USA (inset). The grid-based design used cells with an area of 49 km2, 81 km2 (pictured in gray), and 121 km2. The targeted design sampled places where important biological resources concentrated the target species (i.e., bear’s attraction to anadromous streams; black lines).
Sampling configurations.
Characteristics of the sampling configurations used to simulate capture-mark-recapture of brown bears on the Kenai Peninsula, south-central Alaska, USA. Attributes included the timing of the simulation (period), position of traps (placement), whether traps were stationary or moved between capture sessions, cell area (km2) or trap spacing (km), the number of traps in each of 5 capture sessions, and effort (trap-nights).
| Sampling | Period | Placement | Stationary (S) or | Cell area | No. traps per | Total effort |
|---|---|---|---|---|---|---|
| Grid | 6/1–7/20 | Cell Center | S | 49, 81, 121 | 322, 195, 135 | 16,100, 9,750, 6,750 |
| Grid | 6/1–7/20 | Random | S | 49, 81, 121 | 322, 195, 135 | 16,100, 9,750, 6,750 |
| Grid | 6/1–7/20 | Expert opinion | S | 49, 81, 121 | 322, 195, 135 | 16,100, 9,750, 6,750 |
| Grid | 6/1–7/20 | Expert opinion | M | 49, 81, 121 | 322, 195, 135 | 16,100, 9,750, 6,750 |
| Targeted | 7/10–8/28 | Systematic | S | 17, 19 | 324, 312 | 16,200, 15,600 |
| Targeted | 7/10–8/28 | Expert opinion | S | N/A | 140, 70 | 7,000, 3,500 |
| Targeted | 7/10–8/28 | Expert opinion | M | N/A | 140, 70 | 7,000, 3,500 |
Notes.
These configurations were analyzed and compared (each configuration had 30 simulations). The other configurations produced inaccurate abundances.
Figure 2Brown bear home range sizes.
Distribution of home range sizes of brown bears (n = 42) during 1 June through 20 July on the Kenai Peninsula, south-central Alaska, USA. Mean home range size (M) was 149.7 km2 (SD = 149.8 km2). Sixty-seven percent of bears had home ranges smaller than the mean.
Availability for capture.
The total number of bears on the Kenai Peninsula during the sampling period for the targeted scenario, along with the number of bears present within the sampling frame (≤500 m of an anadromous stream) during that period, for each year of sampling.
| Year | Total no. bears | No. bears within |
|---|---|---|
| 1996 | 2.0 | 2.0 |
| 1997 | 14.0 | 12.0 |
| 1998 | 4.0 | 4.0 |
| 1999 | 8.0 | 8.0 |
| 2000 | 6.0 | 6.0 |
| 2003 | 5.0 | 5.0 |
| 2004 | 3.0 | 3.0 |
Comparison of sampling configurations.
Results describing the bias, precision and accuracy of abundance estimates generated from the grid and targeted sampling configurations, with trap placement stationary or moved between capture sessions (N = 42 for each configuration).
| Configuration | Placement |
|
|
| %Bias | %RMSE |
|
|---|---|---|---|---|---|---|---|
| Grid 7 km | Stationary | 30 | 32.98 | 5.88 | −21.48 | 25.63 | 17.82 |
| Moved | 30 | 37.59 | 7.98 | −10.51 | 21.70 | 21.22 | |
| Grid 9 km | Stationary | 30 | 29.96 | 10.57 | −28.67 | 38.16 | 35.30 |
| Moved | 30 | 36.56 | 9.72 | −12.95 | 26.51 | 26.58 | |
| Grid 11 km | Stationary | 30 | 19.49 | 9.76 | −53.60 | 58.42 | 50.10 |
| Moved | 30 | 32.21 | 17.45 | −23.31 | 47.63 | 54.16 | |
| Targeted | Stationary | 30 | 28.23 | 4.22 | −32.77 | 34.28 | 14.94 |
| Moved | 30 | 34.75 | 4.26 | −17.27 | 20.02 | 12.26 | |
| Targeted(1/2) | Stationary | 30 | 20.36 | 5.00 | −51.51 | 52.87 | 24.56 |
| Moved | 30 | 27.42 | 4.32 | −34.71 | 36.20 | 15.75 |
Notes.
Sample size.
Mean estimated abundance.
Standard deviation of mean estimated abundance.
Percent relative bias.
Percent relative root mean squared error (accuracy).
Coefficient of variation (precision).
Time required to measure population change.
Time (years) required to measure a lambda of 1.04, and a doubling or halving of overall population size, from 5 different sampling configurations with traps stationary (S) or moved (M) between capture sessions. Calculations relied on CVs reported in Table 3.
| Sampling configuration |
|
|
|
|---|---|---|---|
| Grid 7 km (S) | 16 | 19 | 6 |
| Grid 7 km (M) | 19 | 28 | 7 |
| Grid 9 km (S) | 34 | 61 | 17 |
| Grid 9 km (M) | 23 | 43 | 11 |
| Grid 11 km (S) | 48 | 82 | 36 |
| Grid 11 km (M) | 54 | 106 | 41 |
| Targeted (S) | 14 | 13 | 4 |
| Targeted (M) | 12 | 10 | 4 |
| Targeted(1/2) (S) | 21 | 36 | 9 |
| Targeted(1/2) (M) | 15 | 16 | 5 |
Notes.
Number of years required to detect a yearly growth rate (λ) of 1.04.
Number of years required to detect a doubling of the overall population size.
Number of years required to detect a halving of the overall population size.
Encounter rates.
Mean and standard deviation of encounter rates (number of GPS locations considered captures/total number of GPS locations) for all bears in the sampling period, for 5 grid and targeted sampling configurations, with traps stationary or moved between capture sessions (N = 42 bears, with 30 simulations for each configuration).
| Configuration | Stationary | Moved | ||
|---|---|---|---|---|
|
| SD |
| SD | |
| 49 km2 grid | 0.03 | 0.01 | 0.03 | 0.00 |
| 81 km2 grid | 0.02 | 0.01 | 0.02 | 0.00 |
| 121 km2 grid | 0.01 | 0.01 | 0.01 | 0.00 |
| Targeted | 0.12 | 0.03 | 0.12 | 0.01 |
| Targeted(1/2) | 0.06 | 0.02 | 0.06 | 0.01 |
Notes.
Encounter rates.
Comparison of capture probabilities.
Mean and standard deviation of capture probabilities for 5 sampling configurations. We used a t-test to compare capture probabilities.
| Configuration | Stationary traps | Moved traps | Levene’s test | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
| SD( |
| SD( |
|
|
| |||
| 49 km2 grid | 0.60 | 0.08 | 0.66 | 0.07 | 2.82 | 0.099 | −2.92 | 58.0 | 0.005 |
| 81 km2 grid | 0.44 | 0.09 | 0.52 | 0.06 | 2.56 | 0.115 | −3.95 | 58.0 | 0.000 |
| 121 km2 grid | 0.32 | 0.07 | 0.38 | 0.07 | 0.20 | 0.656 | −3.31 | 58.0 | 0.002 |
| Targeted | 0.61 | 0.07 | 0.73 | 0.05 | 2.74 | 0.103 | −8.16 | 58.0 | 0.000 |
| Targeted(1/2) | 0.43 | 0.10 | 0.57 | 0.05 | 10.61 | 0.002 | −7.01 | 44.8 | 0.000 |
Notes.
Capture probability.
Comparison of recapture probabilities.
Mean and standard deviation of recapture probabilities for 5 sampling configurations. We used a t-test to compare recapture probabilities.
| Configuration | Stationary | Moved | Levene’s test | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
| SD( |
| SD( |
|
|
| |||
| 49 km2 grid | 0.47 | 0.13 | 0.43 | 0.08 | 4.05 | 0.049 | 1.19 | 49.2 | 0.241 |
| 81 km2 grid | 0.42 | 0.12 | 0.34 | 0.10 | 0.11 | 0.747 | 2.79 | 58.0 | 0.007 |
| 121 km2 grid | 0.48 | 0.10 | 0.29 | 0.10 | 0.01 | 0.934 | 7.36 | 58.0 | 0.000 |
| Targeted | 0.75 | 0.08 | 0.69 | 0.06 | 1.48 | 0.230 | 3.73 | 58.0 | 0.000 |
| Targeted(1/2) | 0.70 | 0.09 | 0.53 | 0.08 | 0.17 | 0.678 | 7.52 | 58.0 | 0.000 |
Notes.
Recapture probability.