Literature DB >> 24390481

On the energy density of helical proteins.

Manuel Barros1, Angel Ferrández.   

Abstract

We solve the problem of determining the energy actions whose moduli space of extremals contains the class of Lancret helices with a prescribed slope. We first see that the energy density should be linear both in the total bending and in the total twisting, such that the ratio between the weights of them is the prescribed slope. This will give an affirmative answer to the conjecture stated in Barros and Ferrández (J Math Phys 50:103529, 2009). Then, we normalize to get the best choice for the helical energy. It allows us to show that the energy, for instance of a protein chain, does not depend on the slope and is invariant under homotopic changes of the cross section which determines the cylinder where the helix is lying. In particular, the energy of a helix is not arbitrary, but it is given as natural multiples of some basic quantity of energy.

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Year:  2014        PMID: 24390481     DOI: 10.1007/s00285-013-0752-9

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  6 in total

1.  Two Pleated-Sheet Configurations of Polypeptide Chains Involving Both Cis and Trans Amide Groups.

Authors:  L Pauling; R B Corey
Journal:  Proc Natl Acad Sci U S A       Date:  1953-04       Impact factor: 11.205

2.  Two Rippled-Sheet Configurations of Polypeptide Chains, and a Note about the Pleated Sheets.

Authors:  L Pauling; R B Corey
Journal:  Proc Natl Acad Sci U S A       Date:  1953-04       Impact factor: 11.205

3.  Helices in biomolecules.

Authors:  Kevin Cahill
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-12-01

4.  The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain.

Authors:  L PAULING; R B COREY; H R BRANSON
Journal:  Proc Natl Acad Sci U S A       Date:  1951-04       Impact factor: 11.205

5.  Differential geometry of proteins. Helical approximations.

Authors:  A H Louie; R L Somorjai
Journal:  J Mol Biol       Date:  1983-07-25       Impact factor: 5.469

6.  Differential geometry of proteins: a structural and dynamical representation of patterns.

Authors:  A H Louie; R L Somorjai
Journal:  J Theor Biol       Date:  1982-09-21       Impact factor: 2.691

  6 in total

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