| Literature DB >> 24386171 |
Emília Ângela Sippert1, Cléverson de Oliveira e Silva2, Jeane Eliete Laguila Visentainer3, Ana Maria Sell3.
Abstract
The antigens of the Duffy blood group system (DARC) act as a receptor for the interleukin IL-8. IL-8 plays an important role in the pathogenesis of chronic periodontitis due to its chemotactic properties on neutrophils. The aim of this study was to investigate a possible association of Duffy blood group gene polymorphisms with the -353T>A, -845T>C and -738T>A SNPs of the IL8 gene in chronic periodontitis. One hundred and twenty-four individuals with chronic periodontitis and 187 controls were enrolled. DNA was extracted using the salting-out method. The Duffy genotypes and IL8 gene promoter polymorphisms were investigated by PCR-RFLP. Statistical analyses were conducted using the Chi square test with Yates correction or Fisher's Exact Test, and the possibility of associations were evaluated by odds ratio with a 95% confidence interval. When analyzed separately, for the Duffy blood group system, differences in the genotype and allele frequencies were not observed between all the groups analyzed; and, in nonsmokers, the -845C allele (3.6% vs. 0.4%), -845TC genotype (7.3% vs. 0.7%) and the CTA haplotype (3.6% vs. 0.4%) were positively associated with chronic periodontitis. For the first time to our knowledge, the polymorphisms of erythroid DARC plus IL8 -353T>A SNPs were associated with chronic periodontitis in Brazilian individuals. In Afro-Brazilians patients, the FY*02N.01 with IL8 -353A SNP was associated with protection to chronic periodontitis.Entities:
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Year: 2013 PMID: 24386171 PMCID: PMC3873279 DOI: 10.1371/journal.pone.0083286
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
PCR-RFLP: primers, cycling conditions and enzymes used to the genotyping of the Duffy blood group system.
| SNP | Primer sequence (GenBank: S76830.1) | Restriction enzyme | Fragments after enzymatic digestion (bp) |
|---|---|---|---|
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| BanI | (G) 86 + 96 + 210 |
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| (A) 86+ 306 | ||
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| MspAI | (C) 85 + 119 |
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| (T) 85 + 119 + 161 | ||
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| MwoI | (G) 86 + 96 + 210 |
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| (A) 86+ 306 | ||
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| StyI | (T) 81 + 108 |
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| (C) 61 + 81 + 108 |
Cycling conditions: * 95°C, 15’; 35 cycles (94°C, 20”; 62°C, 20”; 72°C, 20”) and 72°C, 10’
** 95°C, 15’; 35 cycles (94°C, 20”; 62°C, 20”; 72°C, 20”) and 72°C, 10’
PCR-RFLP: primers, cycling conditions and enzymes used to identify polymorphisms in the IL8 promoter region.
| SNP | Primer sequence (GenBank:28130) | Restriction enzyme | Fragments after enzymatic digestion (bp) |
|---|---|---|---|
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| AseI | (T) 791 + 736 |
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| (C) 1527 | ||
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| MfeI | (A) 1230 + 297 |
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| (T) 1527 | ||
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| XbaI | (T) 302 + 232 |
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| (A) 534 |
bp: base pairs;
Cycling conditions: * 95°C, 3’; 35 cycles (95°C 45”; 56°C, 30”; 68°C, 2’) and 68°C, 8’
** 94°C, 5’; 35 cycles (94°C, 30”; 61°C, 1’; 72°C, 1’) and 72°C, 8’
(***) It was not found a rs (reference sequence) identification number related to this SNP;
Characteristics of patients with chronic periodontitis and control population.
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|---|---|---|---|---|
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| (%) | ||
| n (%) | n (%) | n (%) | ||
| Gender | Female | 120 (64.2) | 68 (54.8) | 188 (60.5) |
| Male | 67 (35.8) | 56 (45.2) | 123 (39.5) | |
| Age | 18 - 33 years | 35 (18.7) | 16 (12.9) | 51 (16.4) |
| 34 - 49 years | 98 (52.4) | 65 (52.4) | 163 (52.4) | |
| 50 - 65 years | 50 (26.7) | 35 (28.2) | 85 (27.3) | |
| 66 - 81 years | 4 (2.1) | 8 (6.5) | 12 (3.9) | |
| Ethnic background | Caucasian | 128 (68.5) | 72 (58.1) | 200 (64.3) |
| Afro-Brazilian | 14 (7.5) | 15 (12.1) | 29 (9.3) | |
| Mulatto | 45 (24.1) | 37 (29.8) | 82 (26.3) | |
| Smoking | Nonsmoker | 134 (71.7) | 55 (44.4) | 189 (60.8) |
| Smoker | 23 (12.3) | 28 (22.6) | 51 (16.4) | |
| Ex- smoker | 30 (16.0) | 41 (33.1) | 71 (22.8) | |
| Diabetes | No | 180 (96.3) | 109 (87.9) | 289 (92.9) |
| Yes | 7 (3.7) | 15 (12.1) | 22 (7.1) |
* p-value < 0.001; OR = 0.31; 95% CI = 0.19-0.50;
** p-value = 0.03; OR = 2.07; 95% CI = 1.12-3.84;
*** p-value < 0.001; OR = 2.95; 95% CI = 1.56-5.62;
p-value < 0.001; OR = 3.31; 95% CI = 1.88-5.88.
Distribution of genotypes and alleles of the Duffy blood group system in patients with chronic periodontitis and controls.
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| n(%) | n (%) | n(%) | n (%) | |
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| 10 (8.1) | 27 (14.4) | 10 (18.1) | 23 (17.2) |
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| 45 (36.3) | 62 (33.2) | 15 (27.3) | 41 (30.6) |
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| 33 (26.6) | 57 (30.5) | 13 (23.6) | 40 (29.9) |
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| 10 (8.1) | 12 (6.4) | 4 (7.3) | 9 (6.7) |
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| 2 (1.6) | 3 (1.6) | 1 (1.8) | 2 (1.5) |
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| 12 (9.7) | 10 (5.3) | 6 (11) | 8 (6) |
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| 7 (5.6) | 11 (5.9) | 3 (5.5) | 9 (6.7) |
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| 2 (1.6) | 3 (1.6) | 1 (1.8) | 1 (0.7) |
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| 3 (2.4) | 2 (1.1) | 2 (3.6) | 1 (0.7) |
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| 80 (32.3) | 128 (34.2) | 43 (39.1) | 96 (35.8) |
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| 123 (49.6) | 191 (51.1) | 46 (41.8) | 132 (49.3) |
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| 38 (15.3) | 47 (12.6) | 17 (15.5) | 36 (13.4) |
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| 7 (2.8) | 8 (2.1) | 4 (3.6) | 4 (1.5) |
Allele, genotypic and haplotype frequencies of the -845T>C, -738T>A and -353T>A polymorphisms in the IL8 promoter region in patients with periodontitis and controls.
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| n (%) | n (%) | n (%) | n (%) | |
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| 240 (96.8) | 370 (98.9) | 106 (96.4) | 267 (99.6) |
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| 8 (3.2) | 4 (1.1) | 4 (3.6) | 1 (0.4) |
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| 117 (94.4) | 183 (97.9) | 51 (92.7) | 133 (99.3) |
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| 6 (4.8) | 4 (2.1) | 4 (7.3) | 1 (0.7) |
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| 1 (0.8) | 0 (0) | 0 (0) | 0 (0) |
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| 247 (99.6) | 373 (99.7) | 109 (99.1) | 267 (99.6) |
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| 1 (0.4) | 1 (0.3) | 1 (0.9) | 1 (0.4) |
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| 123 (99.2) | 186 (99.5) | 54 (98.2) | 133 (99.3) |
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| 1 (0.8) | 1 (0.5) | 1 (1.8) | 1 (0.7) |
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| 130 (52.4) | 198 (52.9) | 63 (57.3) | 145 (54.1) |
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| 118 (47.6) | 176 (47.1) | 47 (42.7) | 123 (45.9) |
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| 34 (27.4) | 53 (28.3) | 17 (30.9) | 38 (28.4) |
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| 62 (50) | 92 (49.2) | 29 (52.7) | 69 (51.5) |
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| 28 (22.6) | 42 (22.5) | 9 (16.4) | 27 (20.1) |
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| 131 (52.8) | 198 (53) | 63 (57.3) | 145 (54.1) |
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| 108 (43.6) | 171 (45.7) | 42 (38.2) | 121 (45.1) |
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| 1 (0.4) | 1 (0.3) | 1 (0.9) | 1 (0.4) |
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| 8 (3.2) | 4 (1.0) | 4 (3.6) | 1 (0.4) |
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| 57 (46) | 89 (47.6) | 25 (45.5) | 68 (50.7) |
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| 34 (27.4) | 53 (28.3) | 17 (30.9) | 38 (28.4) |
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| 25 (20.2) | 40 (21.4) | 8 (14.5) | 26 (19.4) |
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| 1 (0.8) | 1 (0.5) | 1 (1.8) | 1 (0.75) |
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| 2 (1.6) | 2 (1.1) | 1 (1.8) | 1 (0.75) |
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| 4 (3.2) | 2 (1.1) | 3 (5.5) | 0 (0) |
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| 1 (0.8) | 0 (0) | 0 (0) | 0(0) |
a p-value= 0.027; OR=0.1; CI95%=0.01- 0.9;
b p-value=0.024; OR=10.4; CI95%=1.1-91.2;
c p-value=0.027; OR=0.1; CI95%=0.01- 0.9;
d p-value=0.024; OR=10.1; CI95%=1.1-95.5;
e p-value=0.024; OR=10.1; CI95%=1.1-91.2;
f p-value= 0.024; OR, IC undefined (because the presence of zero).
Distribution of FY allele frequencies with and without the -67T>C (FY*02N.01) and -265T>C (FY*02M.01) SNPs in Afro-Brazilian and Admixed-Brazilian patients with chronic periodontitis and controls.
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|---|---|---|
| n (%) | n (%) | |
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| 20 (66.7) | 12 (42.8) |
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| 10 (33.3) | 16 (57.2) |
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| 183 (83.9) | 307 (88.7) |
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| 35 (16.1) | 39 (11.3) |
Allele, genotype and haplotype frequencies of the , and polymorphisms in the IL8 promoter region in Afro-Brazilian and Admixed-Brazilians patients and controls.
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| n (%) | n (%) | n (%) | n (%) | |
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| 28 (93.3) | 28 (100) | 212 (97.2) | 342 (98.8) |
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| 2 (6.7) | 0 (0) | 6 (2.8) | 4 (1.2) |
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| 13 (86.7) | 14 (100) | 104 (95.4) | 169 (97.7) |
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| 2 (13.3) | 0 (0) | 4 (3.7) | 4 (2.3) |
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| 30 (100) | 28 (100) | 217 (99.5) | 345 (99.7) |
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| 0 (0) | 0 (0) | 1 (0.5) | 1 (0.3) |
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| 15 (100) | 14 (100) | 108 (99.1) | 172 (99.4) |
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| 0 (0) | 0 (0) | 1 (0.9) | 1 (0.6) |
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| 18 (60.0) | 11 (39.3) | 112 (51.4) | 187 (54.0) |
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| 12 (40.0) | 17 (60.7) | 106 (48.6) | 159(46.0) |
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| 5 (33.3) | 3 (21.4) | 29 (26.6) | 50 (28.9) |
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| 8 (53.3) | 5 (35.7) | 54 (49.5) | 87 (50.3) |
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| 2 (13.3) | 6 (42.9) | 26 (23.9) | 36 (20.8) |
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| 18 (60) | 11 (39.3) | 113 (51.8) | 187 (54.0) |
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| 10 (33.3) | 17 (60.7) | 98 (45.0) | 154 (44.5) |
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| 0 (0) | 0 (0) | 1 (0.5) | 1 (0.3) |
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| 2 (6.7) | 0 (0) | 6 (2.8) | 4(1.2) |
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| 6 (40.0) | 5 (35.7) | 51 (46.8) | 84 (48.6) |
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| 5 (33.4) | 3 (21.4) | 29 (26.6) | 50 (28.9) |
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| 2 (13.3) | 6 (42.9) | 23 (21.1) | 34 (19.7) |
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| 0 (0) | 0 (0) | 1 (0.9) | 1 (0.6) |
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| 0 (0) | 0 (0) | 2 (1.8) | 2 (1.2) |
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| 2 (13.3) | 0 (0) | 2 (1.8) | 2 (1.2) |
* p-value = 0.067; OR = 0.3; 95% CI = 0.1- 0.9.
The genotypes -845CC, -738AA and TAT, CTT, CAT, CAA and CTA/CTA were not found in patients and controls.
Distribution of FY genotypes with the presence and absence of the and 265T>C polymorphisms versus the IL8 SNP in patients with chronic periodontitis and controls.
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|---|---|---|---|---|---|---|---|---|---|---|
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| TT | TA | AA | A | T | TT | TA | AA | A | T |
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| 24 (19.4) | 42 (33.9) | 22 (17.7) | 86 (34.7) | 90 (36.3) | 43 (23) | 72 (38.5) | 31 (16.6) | 134 (35.8) | 158 (42.2) |
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| 10 (8.1) | 20 (16.1) | 6 (4.8) | 32 (12.9) | 40 (16.1) | 10 (5.34) | 21 (11.22) | 10 (5.34) | 41 (11) | 41 (11) |
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| 3 (20) | 4 (26.7) | 1 (6.7) | 6 (20) | 10 (33.3) | 2 (14.3) | 1 (7.1) | 1 (7.1) | 3 (10.7) | 5 (17.9) |
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| 2 (13.3) | 4 (26.7) | 1 (6.7) | 6 (20)c | 8 (26.7) | 1 (7.1) | 4 (28.6) | 5 (35.7) | 14 (50)c | 6 (21.4) |
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| 21 (19.3) | 38 (34.8) | 21 (19.3) | 80 (36.7) | 80 (36.7) | 41 (23.7) | 71 (41.0) | 30 (17.3) | 131 (37.9) | 153 (44.2) |
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| 8 (7.3) | 16 (14.7) | 5 (4.6) | 26 (11.9) | 32 (14.7) | 9 (5.2) | 16 (9.2) | 6 (3.5) | 28 (8.1) | 34 (9.8) |
a FY genotypes without and/or 265T>C SNPs;
b FY genotypes with and/or 265T>C SNPs in homozygosis or heterozygosis (without DARC expression or lower DARC expression);
cp-value = 0.03; OR = 0.25; 95% CI = 0.078- 0.79;