Literature DB >> 24386012

Synthetic circuit of inositol phosphorylceramide synthase in Leishmania : a chemical biology approach.

Vineetha Mandlik1, Dixita Limbachiya2, Sonali Shinde1, Milsee Mol1, Shailza Singh1.   

Abstract

Building circuits and studying their behavior in cells is a major goal of systems and synthetic biology. Synthetic biology enables the precise control of cellular states for systems studies, the discovery of novel parts, control strategies, and interactions for the design of robust synthetic systems. To the best of our knowledge, there are no literature reports for the synthetic circuit construction for protozoan parasites. This paper describes the construction of genetic circuit for the targeted enzyme inositol phosphorylceramide synthase belonging to the protozoan parasite Leishmania. To explore the dynamic nature of the circuit designed, simulation was done followed by circuit validation by qualitative and quantitative approaches. The genetic circuit designed for inositol phosphorylceramide synthase (Biomodels Database-MODEL1208030000) shows responsiveness, oscillatory and bistable behavior, together with intrinsic robustness.

Entities:  

Keywords:  Degradation rate; Genetic circuit; IPCS; Leishmania; Logic circuit; Simulation

Year:  2013        PMID: 24386012      PMCID: PMC3606695          DOI: 10.1007/s12154-012-0089-7

Source DB:  PubMed          Journal:  J Chem Biol        ISSN: 1864-6158


  19 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

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Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  On reverse engineering of gene interaction networks using time course data with repeated measurements.

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Authors:  Christoph Müssel; Martin Hopfensitz; Hans A Kestler
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Review 4.  Synthetic biology: an emerging engineering discipline.

Authors:  Allen A Cheng; Timothy K Lu
Journal:  Annu Rev Biomed Eng       Date:  2012-05-07       Impact factor: 9.590

Review 5.  Synthetic gene circuits: design with directed evolution.

Authors:  Eric L Haseltine; Frances H Arnold
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

Review 6.  Synthetic biology--putting engineering into biology.

Authors:  Matthias Heinemann; Sven Panke
Journal:  Bioinformatics       Date:  2006-09-05       Impact factor: 6.937

Review 7.  Mathematical modeling: bridging the gap between concept and realization in synthetic biology.

Authors:  Yuting Zheng; Ganesh Sriram
Journal:  J Biomed Biotechnol       Date:  2010-05-30

8.  OrthoMCL: identification of ortholog groups for eukaryotic genomes.

Authors:  Li Li; Christian J Stoeckert; David S Roos
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

9.  The protozoan inositol phosphorylceramide synthase: a novel drug target that defines a new class of sphingolipid synthase.

Authors:  Paul W Denny; Hosam Shams-Eldin; Helen P Price; Deborah F Smith; Ralph T Schwarz
Journal:  J Biol Chem       Date:  2006-07-22       Impact factor: 5.157

10.  WebGeSTer DB--a transcription terminator database.

Authors:  Anirban Mitra; Anil K Kesarwani; Debnath Pal; Valakunja Nagaraja
Journal:  Nucleic Acids Res       Date:  2010-10-23       Impact factor: 16.971

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  1 in total

Review 1.  Mechanobiology of immune cells: Messengers, receivers and followers in leishmaniasis aiding synthetic devices.

Authors:  Shweta Khandibharad; Prajakta Nimsarkar; Shailza Singh
Journal:  Curr Res Immunol       Date:  2022-08-23
  1 in total

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