Literature DB >> 24383452

Systematic approach to conformational sampling for assigning absolute configuration using vibrational circular dichroism.

Edward C Sherer1, Claire H Lee, Joseph Shpungin, James F Cuff, Chenxiao Da, Richard Ball, Richard Bach, Alejandro Crespo, Xiaoyi Gong, Christopher J Welch.   

Abstract

Systematic methods that speed-up the assignment of absolute configuration using vibrational circular dichrosim (VCD) and simplify its usage will advance this technique into a robust platform technology. Applying VCD to pharmaceutically relevant compounds has been handled in an ad hoc fashion, relying on fragment analysis and technical shortcuts to reduce the computational time required. We leverage a large computational infrastructure to provide adequate conformational exploration which enables an accurate assignment of absolute configuration. We describe a systematic approach for rapid calculation of VCD/IR spectra and comparison with corresponding measured spectra and apply this approach to assign the correct stereochemistry of nine test cases. We suggest moving away from the fragment approach when making VCD assignments. In addition to enabling faster and more reliable VCD assignments of absolute configuration, the ability to rapidly explore conformational space and sample conformations of complex molecules will have applicability in other areas of drug discovery.

Mesh:

Substances:

Year:  2014        PMID: 24383452     DOI: 10.1021/jm401600u

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  7 in total

1.  Photoexcitation of flavoenzymes enables a stereoselective radical cyclization.

Authors:  Kyle F Biegasiewicz; Simon J Cooper; Xin Gao; Daniel G Oblinsky; Ji Hye Kim; Samuel E Garfinkle; Leo A Joyce; Braddock A Sandoval; Gregory D Scholes; Todd K Hyster
Journal:  Science       Date:  2019-06-21       Impact factor: 47.728

2.  The evolution of drug design at Merck Research Laboratories.

Authors:  Frank K Brown; Edward C Sherer; Scott A Johnson; M Katharine Holloway; Bradley S Sherborne
Journal:  J Comput Aided Mol Des       Date:  2016-11-23       Impact factor: 3.686

3.  Beyond optical rotation: what's left is not always right in total synthesis.

Authors:  Leo A Joyce; Christopher C Nawrat; Edward C Sherer; Mirlinda Biba; Andrew Brunskill; Gary E Martin; Ryan D Cohen; Ian W Davies
Journal:  Chem Sci       Date:  2017-10-30       Impact factor: 9.825

4.  CF3: an overlooked chromophore in VCD spectra. A review of recent applications in structural determination.

Authors:  Sergio Abbate; Giovanna Longhi; Giuseppe Mazzeo; Claudio Villani; Silvija Petković; Renzo Ruzziconi
Journal:  RSC Adv       Date:  2019-04-16       Impact factor: 3.361

5.  Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be4B8 Cluster at Different Temperatures.

Authors:  Carlos Emiliano Buelna-García; Eduardo Robles-Chaparro; Tristan Parra-Arellano; Jesus Manuel Quiroz-Castillo; Teresa Del-Castillo-Castro; Gerardo Martínez-Guajardo; Cesar Castillo-Quevedo; Aned de-León-Flores; Gilberto Anzueto-Sánchez; Martha Fabiola Martin-Del-Campo-Solis; Ana Maria Mendoza-Wilson; Alejandro Vásquez-Espinal; Jose Luis Cabellos
Journal:  Molecules       Date:  2021-06-28       Impact factor: 4.411

6.  Palladium-Catalyzed Enantioselective Heck Alkenylation of Trisubstituted Allylic Alkenols: A Redox-Relay Strategy to Construct Vicinal Stereocenters.

Authors:  Chun Zhang; Brandon Tutkowski; Ryan J DeLuca; Leo A Joyce; Olaf Wiest; Matthew S Sigman
Journal:  Chem Sci       Date:  2016-12-09       Impact factor: 9.825

7.  Direct regioisomer analysis of crude reaction mixtures via molecular rotational resonance (MRR) spectroscopy.

Authors:  Leo A Joyce; Danielle M Schultz; Edward C Sherer; Justin L Neill; Reilly E Sonstrom; Brooks H Pate
Journal:  Chem Sci       Date:  2020-06-08       Impact factor: 9.825

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.