Literature DB >> 24382429

Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: an application to Alzheimer's disease.

Khadim Dramé1, Gayo Diallo2, Fleur Delva2, Jean François Dartigues2, Evelyne Mouillet2, Roger Salamon2, Fleur Mougin2.   

Abstract

Ontologies are useful tools for sharing and exchanging knowledge. However ontology construction is complex and often time consuming. In this paper, we present a method for building a bilingual domain ontology from textual and termino-ontological resources intended for semantic annotation and information retrieval of textual documents. This method combines two approaches: ontology learning from texts and the reuse of existing terminological resources. It consists of four steps: (i) term extraction from domain specific corpora (in French and English) using textual analysis tools, (ii) clustering of terms into concepts organized according to the UMLS Metathesaurus, (iii) ontology enrichment through the alignment of French and English terms using parallel corpora and the integration of new concepts, (iv) refinement and validation of results by domain experts. These validated results are formalized into a domain ontology dedicated to Alzheimer's disease and related syndromes which is available online (http://lesim.isped.u-bordeaux2.fr/SemBiP/ressources/ontoAD.owl). The latter currently includes 5765 concepts linked by 7499 taxonomic relationships and 10,889 non-taxonomic relationships. Among these results, 439 concepts absent from the UMLS were created and 608 new synonymous French terms were added. The proposed method is sufficiently flexible to be applied to other domains.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Alzheimer’s disease; Ontological resource reuse; Ontology development; Parallel corpus; Term alignment

Mesh:

Year:  2013        PMID: 24382429     DOI: 10.1016/j.jbi.2013.12.013

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  8 in total

Review 1.  Knowledge Representation and Management. From Ontology to Annotation. Findings from the Yearbook 2015 Section on Knowledge Representation and Management.

Authors:  J Charlet; S J Darmoni
Journal:  Yearb Med Inform       Date:  2015-08-13

Review 2.  Assessing the practice of biomedical ontology evaluation: Gaps and opportunities.

Authors:  Muhammad Amith; Zhe He; Jiang Bian; Juan Antonio Lossio-Ventura; Cui Tao
Journal:  J Biomed Inform       Date:  2018-02-17       Impact factor: 6.317

Review 3.  The Representation of Causality and Causation with Ontologies: A Systematic Literature Review.

Authors:  Suhila Sawesi; Mohamed Rashrash; Olaf Dammann
Journal:  Online J Public Health Inform       Date:  2022-09-07

4.  An effective method of large scale ontology matching.

Authors:  Gayo Diallo
Journal:  J Biomed Semantics       Date:  2014-10-28

5.  Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer's Disease Data.

Authors:  Barbara Kramarz; Paola Roncaglia; Birgit H M Meldal; Rachael P Huntley; Maria J Martin; Sandra Orchard; Helen Parkinson; David Brough; Rina Bandopadhyay; Nigel M Hooper; Ruth C Lovering
Journal:  Genes (Basel)       Date:  2018-11-29       Impact factor: 4.096

6.  Use of a modular ontology and a semantic annotation tool to describe the care pathway of patients with amyotrophic lateral sclerosis in a coordination network.

Authors:  Sonia Cardoso; Pierre Meneton; Xavier Aimé; Vincent Meininger; David Grabli; Gilles Guezennec; Jean Charlet
Journal:  PLoS One       Date:  2021-01-06       Impact factor: 3.240

7.  Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data.

Authors:  Barbara Kramarz; Rachael P Huntley; Milagros Rodríguez-López; Paola Roncaglia; Shirin C C Saverimuttu; Helen Parkinson; Rina Bandopadhyay; Maria-Jesus Martin; Sandra Orchard; Nigel M Hooper; David Brough; Ruth C Lovering
Journal:  J Alzheimers Dis       Date:  2020       Impact factor: 4.472

Review 8.  The Unified Medical Language System at 30 Years and How It Is Used and Published: Systematic Review and Content Analysis.

Authors:  Xia Jing
Journal:  JMIR Med Inform       Date:  2021-08-27
  8 in total

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