| Literature DB >> 24376807 |
Yu Lu1, Cuiju Mo1, Zhiyu Zeng2, Siyuan Chen3, Yantong Xie3, Qiliu Peng1, Yu He1, Yan Deng1, Jian Wang1, Li Xie1, Jie Zeng4, Shan Li1, Xue Qin1.
Abstract
BACKGROUND: Many epidemiological studies have been conducted to explore the association between a single CYP2D6 gene polymorphism and Parkinson's disease (PD) susceptibility. However, the results remain controversial.Entities:
Mesh:
Substances:
Year: 2013 PMID: 24376807 PMCID: PMC3869836 DOI: 10.1371/journal.pone.0084413
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow diagram for the selection of articles for inclusion in the meta-analysis.
Characteristics of studies included in this meta-analysis.
| Author, Year | country | Ethnicity | case/control | Genotyping methods | Form of PD patients(S/F/NR) | PD on-set age(E/L/NA) | Source of control | PI | HWE(P value) | QS |
|---|---|---|---|---|---|---|---|---|---|---|
| Smith CA,1992 | UK | Caucasian | 193/720 | PCR | S | NA | H-B | CYP2D6*4 G>A | 0.106 | 12 |
| Armstrong M,1992 | UK | Caucasian | 53/72 | PCR-RFLP | NR | NA | H-B | CYP2D6-B | 0.174 | 10 |
| Kurth MC,1993 | USA | Caucasian | 50/110 | PCR-RFLP | F | L | H-B | CYP2D6-29B | 0.178 | 10 |
| Plante-Bordeneuve,1994 | British and Irish | Caucasian | 45/69 | PCR | F | NA | H-B | CYP2D6-B | 0.215 | 10 |
| Akhmedova SN,1995 | Russia | Caucasian | 80/70 | PCR-RFLP | S | NA | F-B | CYP2D6-29B | 0.886 | 9 |
| Agundez JA,1995 | Spain | Caucasian | 123/150 | PCR-RFLP | NR | 33/123 E: 39.4±7.2y 90/123 L: 65.9±8.0y | P-B | CYP2D6-B | 0.552 | 11 |
| Diederich N,1996 | Germany | Caucasian | 80/106 | PCR | S | 32/80 E: 39.8±5.1y 48/80 L: 63.2±7.7y | Mix | CYP2D6-B | 0.014 | 7 |
| Gasser T,1996 | diverse | Caucasian | 178/73 | PCR | 115/178 S 63/178 F | NA | H-B | CYP2D6-B | 0.901 | 10 |
| Chen X,1996 | guam |
Oriental
| 28/212 | PCR | S | NA | H-B | CYP2D6-B | 0.033 | 7 |
| Bordet R,1996 | France | Caucasian | 105/105 | PCR-RFLP | S | NA | H-B | CYP2D6-B | 0.065 | 10 |
| Pang CP,1997 | China | Asian | 200/227 | PCR | S | NA | H-B | CYP2D6*4 G>A | 0.925 | 11 |
| Chen DK,1998 | China | Asian | 215/313 | PCR | S | NA | H-B | CYP2D6*4 G>A | 0.936 | 11 |
| Nicholl,1999 | UK | Caucasian | 176/175 | PCR-RFLP | S | NA | H-B | CYP2D6*4 G>A | 0.066 | 10 |
| Nicholl,1999 | UK | Caucasian | 30/30 | PCR-RFLP | F | NA | H-B | CYP2D6*4 G>A | 0.110 | 9 |
| Atkinson A,1999 | UK | Caucasian | 33/75 | PCR-RFLP | S | NA | H-B | CYP2D6*4 G>A | 0.019 | 8 |
| Chida M,1999 | Japan | Asian | 38/270 | PCR | S | NA | H-B | CYP2D6*4 G>A | 0.862 | 10 |
| Joost O,1999 | USA | Caucasian | 109/110 | PCR | NR | NA | H-B | CYP2D6*4 G>A | 0.618 | 10 |
| Štefanovć M,2000 | Croatia | Caucasian | 41/145 | LR-PCR | NR | NA | H-B | CYP2D6*4 G>A | 0.495 | 10 |
| PayamiH,2001 | USA | Caucasian | 576/247 | PCR | 360/576 S 162/576 F | 145/576E: 41.1±7.8y 431/576 L: 63.1±7.7y | H-B | CYP2D6*4 G>A | 0.004 | 9 |
| Woo SI,2001 | Korea | Asian | 93/122 | PCR | NR | NA | H-B | CYP2D6*4 G>A | 0.945 | 10 |
| Durić G,2007 | Russia | Caucasian | 106/75 | PCR–RFLP | 96/106 S 10/106 F | 55/106 E: 39.5±3.8y 41/106 L: 58.1±6.2y | H-B | CYP2D6*4 G>A | 0.281 | 11 |
| Singh M,2010 | India | Asian | 77/125 | PCR–RFLP | S | NA | H-B | CYP2D6*4 G>A | 0.059 | 11 |
PI, Polymorphism(s) investigated; PCR–RFLP, Polymerase chain reaction-restriction fragment length polymorphism; RT–PCR, Real time-polymerase chain reaction; LR-PCR, long-range-PCR; NR: Not report; NA, Not available; PB, Population–based; HB, Hospital–based; HWE, Hardy–Weinberg equilibrium in control population; QS: quality score
Meta-analysis and heterogeneity test of the CYP2D6 gene polymorphisms on PD risk.
| Comparisons | No. of study | No. of patient | A vs. G | AA vs. GG | AG vs. GG | AG + AA vs. GG | AA vs. AG + GG | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR(95%CI) | I2(%) | OR(95%CI) | I2(%) | OR(95%CI) | I2(%) | OR(95%CI) | I2(%) | OR(95%CI) | I2(%) | |||
| overall | 22 | 2629 | 1.28(1.14-1.43) | 38.7 | 1.43(1.06-1.93) | 0.0 | 1.22(1.06-1.40) | 29.8 | 1.26(1.10-1.44) | 23.1 | 1.37(1.02-1.83) | 0.0 |
| subgroup | ||||||||||||
| Sporadic/Familial PD(S/F/NR) | ||||||||||||
| S | 13 | 1932 | 1.15(1.00-1.32) | 17.6 | 1.40(1.00-1.96) | 11.0 | 1.06(0.89-1.25) | 13.4 | 1.11(0.95-1.30) | 0.0 | 1.37(0.98-1.92) | 21.0 |
| F | 6 | 278 | 1.40(1.04-1.88) | 74.1 | 1.13(0.56-2.29) | 26.4 | 1.50(1.04-2.16) | 58.1 | 1.44(1.02-2.03) | 64.6 | 1.33(1.00-1.78) | 2.7 |
| NA | 5 | 419 | 1.65(1.24-2.20) | 23.4 | 1.80(0.71-4.59) | 9.5 | 1.62(1.17-2.26) | 0.0 | 1.65(1.19-2.27) | 0.0 | 1.61(0.64-4.08) | 3.9 |
| Early/Late-onset PD(E/L/NA) | ||||||||||||
| E | 4 | 265 | 0.84(0.62-1.14) | 85.1 | 0.60(0.28-1.27) | 0.0 | 0.97(0.67-1.41) | 80.8 | 0.90(0.63-1.28) | 81.1 | 0.66(0.32-1.50) | 0.0 |
| L | 5 | 660 | 1.15(0.93-1.42) | 74.4 | 0.87(0.52-1.47) | 37.8 | 1.28(0.98-1.66) | 34.6 | 1.20(0.94-1.54) | 55.2 | 0.80(0.48-1.33) | 5.9 |
| NA | 16 | 1694 | 1.32(1.14-1.53) | 33.9 | 1.67(1.14-2.45) | 0.0 | 1.23(1.03-1.46) | 31.9 | 1.28(1.09-1.52) | 24.5 | 1.61(1.10-2.34) | 0.0 |
| Ethnicity | ||||||||||||
| Asian | 6 | 651 | 1.26(0.78-2.03) | 0.0 | 1.08(0.21-5.47) | 0.0 | 1.31(0.77-2.23) | 0.0 | 1.27(0.76-2.13) | 0.0 | 1.05(0.21-5.28) | 0.0 |
| Caucasian | 15 | 1978 | 1.28(1.13-1.44) | 50.2 | 1.45(1.07-1.96) | 0.3 | 1.21(1.05-1.40) | 39.4 | 1.26(1.09-1.44) | 33.4 | 1.38(1.02-1.86) | 1.4 |
OR: odds ratio; CI: confidence intervals; S/F/NR: Sporadic/Familial/Not Report; E/L/NA: Early/Late/Not Available.
Figure 2Galbraith plots of CYP2D6*4 allele polymorphisms and PD risk in different contrast models.
a The studies of Kurth MC et al. and Atkinson A et al. were outliers in the contrast A vs. G. b The studiy of Atkinson A et al. was the outlier in the contrast AG vs. GG. c The studies of Atkinson A et al. was the outlier in the contrast AG+AA vs. GG.
Figure 3Funnel plot analysis and Egger’s test to detect publication bias in different contrast models.
Each point represents a separate study for the indicated association. a Funnel plot and Egger’s test for contrast A vs. G; b Funnel plot and Egger’s test for contrast AA vs. GG; c Funnel plot and Egger’s test for contrast AG vs. GG; d Funnel plot and Egger’s test for contrast AG+AA vs. GG; e Funnel plot and Egger’s test for contrast AA vs. GG+AG.