Literature DB >> 24376125

Flux response of glycolysis and storage metabolism during rapid feast/famine conditions in Penicillium chrysogenum using dynamic (13)C labeling.

Lodewijk de Jonge1, Nicolaas A A Buijs, Joseph J Heijnen, Walter M van Gulik, Alessandro Abate, S Aljoscha Wahl.   

Abstract

The scale-up of fermentation processes frequently leads to a reduced productivity compared to small-scale screening experiments. Large-scale mixing limitations that lead to gradients in substrate and oxygen availability could influence the microorganism performance. Here, the impact of substrate gradients on a penicillin G producing Penicillium chrysogenum cultivation was analyzed using an intermittent glucose feeding regime. The intermittent feeding led to fluctuations in the extracellular glucose concentration between 400 μM down to 6.5 μM at the end of the cycle. The intracellular metabolite concentrations responded strongly and showed up to 100-fold changes. The intracellular flux changes were estimated on the basis of dynamic (13) C mass isotopomer measurements during three cycles of feast and famine using a novel hybrid modeling approach. The flux estimations indicated a high turnover of internal and external storage metabolites in P. chrysogenum under feast/famine conditions. The synthesis and degradation of storage requires cellular energy (ATP and UTP) in competition with other cellular functions including product formation. Especially, 38% of the incoming glucose was recycled once in storage metabolism. This result indicated that storage turnover is increased under dynamic cultivation conditions and contributes to the observed decrease in productivity compared to reference steady-state conditions.
Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  13C flux analysis; Dynamic conditions; In vivo enzyme kinetics; P. chrysogenum; Systems biology

Mesh:

Substances:

Year:  2013        PMID: 24376125     DOI: 10.1002/biot.201200260

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  8 in total

Review 1.  Quantitative metabolic fluxes regulated by trans-omic networks.

Authors:  Satoshi Ohno; Saori Uematsu; Shinya Kuroda
Journal:  Biochem J       Date:  2022-03-31       Impact factor: 3.766

2.  Fast "Feast/Famine" Cycles for Studying Microbial Physiology Under Dynamic Conditions: A Case Study with Saccharomyces cerevisiae.

Authors:  Camilo A Suarez-Mendez; Andre Sousa; Joseph J Heijnen; Aljoscha Wahl
Journal:  Metabolites       Date:  2014-05-15

3.  Effective Estimation of Dynamic Metabolic Fluxes Using (13)C Labeling and Piecewise Affine Approximation: From Theory to Practical Applicability.

Authors:  Robin Schumacher; S Aljoscha Wahl
Journal:  Metabolites       Date:  2015-12-04

4.  Bioprocess scale-up/down as integrative enabling technology: from fluid mechanics to systems biology and beyond.

Authors:  Frank Delvigne; Ralf Takors; Rob Mudde; Walter van Gulik; Henk Noorman
Journal:  Microb Biotechnol       Date:  2017-08-14       Impact factor: 5.813

5.  Metabolic adjustment upon repetitive substrate perturbations using dynamic 13C-tracing in yeast.

Authors:  C A Suarez-Mendez; C Ras; S A Wahl
Journal:  Microb Cell Fact       Date:  2017-09-25       Impact factor: 5.328

6.  Escherichia coli metabolism under short-term repetitive substrate dynamics: adaptation and trade-offs.

Authors:  Eleni Vasilakou; Mark C M van Loosdrecht; S Aljoscha Wahl
Journal:  Microb Cell Fact       Date:  2020-05-29       Impact factor: 5.328

7.  Comparative performance of different scale-down simulators of substrate gradients in Penicillium chrysogenum cultures: the need of a biological systems response analysis.

Authors:  Guan Wang; Junfei Zhao; Cees Haringa; Wenjun Tang; Jianye Xia; Ju Chu; Yingping Zhuang; Siliang Zhang; Amit T Deshmukh; Walter van Gulik; Joseph J Heijnen; Henk J Noorman
Journal:  Microb Biotechnol       Date:  2018-01-15       Impact factor: 5.813

8.  Changes in Oxygen Availability during Glucose-Limited Chemostat Cultivations of Penicillium chrysogenum Lead to Rapid Metabolite, Flux and Productivity Responses.

Authors:  Qi Yang; Wenli Lin; Jiawei Xu; Nan Guo; Jiachen Zhao; Gaoya Wang; Yongbo Wang; Ju Chu; Guan Wang
Journal:  Metabolites       Date:  2022-01-07
  8 in total

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