Literature DB >> 24371181

An integrative bioinformatics pipeline for the genomewide identification of novel porcine microRNA genes.

Wei Fang1, Na Zhou, Dengyun Li, Zhigang Chen, Pengfei Jiang, Deli Zhang.   

Abstract

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Year:  2013        PMID： 24371181     DOI： 10.1007/s12041-013-0294-3

Source DB:  PubMed          Journal:  J Genet        ISSN： 0022-1333            Impact factor:   1.166


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  25 in total

1.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

2.  Over 20% of human transcripts might form sense-antisense pairs.

Authors:  Jianjun Chen; Miao Sun; W James Kent; Xiaoqiu Huang; Hanqing Xie; Wenquan Wang; Guolin Zhou; Run Zhang Shi; Janet D Rowley
Journal:  Nucleic Acids Res       Date:  2004-09-08       Impact factor: 16.971

3.  A comparative profile of the microRNA transcriptome in immature and mature porcine testes using Solexa deep sequencing.

Authors:  Chuanjiang Lian; Boxing Sun; Shuling Niu; Runjun Yang; Boyang Liu; Chunyan Lu; Jilun Meng; Zhengyan Qiu; Liying Zhang; Zhihui Zhao
Journal:  FEBS J       Date:  2012-02-10       Impact factor: 5.542

4.  Poliovirus escape from RNA interference: short interfering RNA-target recognition and implications for therapeutic approaches.

Authors:  Leonid Gitlin; Jeffrey K Stone; Raul Andino
Journal:  J Virol       Date:  2005-01       Impact factor: 5.103

5.  Identification of differences in microRNA transcriptomes between porcine oxidative and glycolytic skeletal muscles.

Authors:  Yingkai Liu; Mingzhou Li; Jideng Ma; Jie Zhang; Chaowei Zhou; Tao Wang; Xiaolian Gao; Xuewei Li
Journal:  BMC Mol Biol       Date:  2013-02-18       Impact factor: 2.946

6.  Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.

Authors:  Jeremy Goecks; Anton Nekrutenko; James Taylor
Journal:  Genome Biol       Date:  2010-08-25       Impact factor: 13.583

7.  The UCSC Genome Browser database: extensions and updates 2011.

Authors:  Timothy R Dreszer; Donna Karolchik; Ann S Zweig; Angie S Hinrichs; Brian J Raney; Robert M Kuhn; Laurence R Meyer; Mathew Wong; Cricket A Sloan; Kate R Rosenbloom; Greg Roe; Brooke Rhead; Andy Pohl; Venkat S Malladi; Chin H Li; Katrina Learned; Vanessa Kirkup; Fan Hsu; Rachel A Harte; Luvina Guruvadoo; Mary Goldman; Belinda M Giardine; Pauline A Fujita; Mark Diekhans; Melissa S Cline; Hiram Clawson; Galt P Barber; David Haussler; W James Kent
Journal:  Nucleic Acids Res       Date:  2011-11-15       Impact factor: 16.971

8.  Ensembl 2012.

Authors:  Paul Flicek; M Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Laurent Gil; Leo Gordon; Maurice Hendrix; Thibaut Hourlier; Nathan Johnson; Andreas K Kähäri; Damian Keefe; Stephen Keenan; Rhoda Kinsella; Monika Komorowska; Gautier Koscielny; Eugene Kulesha; Pontus Larsson; Ian Longden; William McLaren; Matthieu Muffato; Bert Overduin; Miguel Pignatelli; Bethan Pritchard; Harpreet Singh Riat; Graham R S Ritchie; Magali Ruffier; Michael Schuster; Daniel Sobral; Y Amy Tang; Kieron Taylor; Stephen Trevanion; Jana Vandrovcova; Simon White; Mark Wilson; Steven P Wilder; Bronwen L Aken; Ewan Birney; Fiona Cunningham; Ian Dunham; Richard Durbin; Xosé M Fernández-Suarez; Jennifer Harrow; Javier Herrero; Tim J P Hubbard; Anne Parker; Glenn Proctor; Giulietta Spudich; Jan Vogel; Andy Yates; Amonida Zadissa; Stephen M J Searle
Journal:  Nucleic Acids Res       Date:  2011-11-15       Impact factor: 16.971

9.  ViennaRNA Package 2.0.

Authors:  Ronny Lorenz; Stephan H Bernhart; Christian Höner Zu Siederdissen; Hakim Tafer; Christoph Flamm; Peter F Stadler; Ivo L Hofacker
Journal:  Algorithms Mol Biol       Date:  2011-11-24       Impact factor: 1.405

Review 10.  Current tools for the identification of miRNA genes and their targets.

Authors:  N D Mendes; A T Freitas; M-F Sagot
Journal:  Nucleic Acids Res       Date:  2009-03-18       Impact factor: 16.971
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